메뉴 건너뛰기




Volumn 75, Issue 2, 2009, Pages 528-532

X-ray crystal structure of a CRISPR-associated RAMP superfamily protein, Cmr5, from Thermus thermophilus HB8

Author keywords

Cas protein; Cmr5; CRISPR; Pfam09701; RAMP superfamily; Structural genomics; Thermophile; TTHB164

Indexed keywords

PROTEIN CRM5; RECEPTOR ACTIVITY MODIFYING PROTEIN; UNCLASSIFIED DRUG; BACTERIAL PROTEIN; RECOMBINANT PROTEIN;

EID: 66149108791     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.22358     Document Type: Article
Times cited : (22)

References (30)
  • 1
    • 0023600057 scopus 로고
    • Nucleotide sequence of the iap gene, responsible for alkaline phosphatase isozyme conversion in Escherichia coli, and identification of the gene product
    • Ishino Y, Shinagawa H, Makino K, Amemura M, Nakata A. Nucleotide sequence of the iap gene, responsible for alkaline phosphatase isozyme conversion in Escherichia coli, and identification of the gene product. J Bacteriol 1987;169:5429-5433.
    • (1987) J Bacteriol , vol.169 , pp. 5429-5433
    • Ishino, Y.1    Shinagawa, H.2    Makino, K.3    Amemura, M.4    Nakata, A.5
  • 2
    • 0036408356 scopus 로고    scopus 로고
    • Identification of a novel family of sequence repeats among prokaryotes
    • Jansen R, van Embden JD, Gaastra W, Schouls LM. Identification of a novel family of sequence repeats among prokaryotes. Omics 2002;6:23-33.
    • (2002) Omics , vol.6 , pp. 23-33
    • Jansen, R.1    van Embden, J.D.2    Gaastra, W.3    Schouls, L.M.4
  • 3
    • 35748974534 scopus 로고    scopus 로고
    • Evolutionary conservation of sequence and secondary structures in CRISPR repeats
    • Kunin V, Sorek R, Hugenholtz P. Evolutionary conservation of sequence and secondary structures in CRISPR repeats. Genome Biol 2007;8:R61.
    • (2007) Genome Biol , vol.8
    • Kunin, V.1    Sorek, R.2    Hugenholtz, P.3
  • 4
    • 0034034401 scopus 로고    scopus 로고
    • Biological significance of a family of regularly spaced repeats in the genomes of Archaea, Bacteria, and mitochondria
    • Mojica FJ, Diez-Villasenor C, Soria E, Juez G. Biological significance of a family of regularly spaced repeats in the genomes of Archaea, Bacteria, and mitochondria. Mol Microbiol 2000;36:244-246.
    • (2000) Mol Microbiol , vol.36 , pp. 244-246
    • Mojica, F.J.1    Diez-Villasenor, C.2    Soria, E.3    Juez, G.4
  • 5
    • 23844505202 scopus 로고    scopus 로고
    • Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin
    • Bolotin A, Quinquis B, Sorokin A, Ehrlich SD. Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin. Microbiology 2005;151:2551-2561.
    • (2005) Microbiology , vol.151 , pp. 2551-2561
    • Bolotin, A.1    Quinquis, B.2    Sorokin, A.3    Ehrlich, S.D.4
  • 6
    • 16444385662 scopus 로고    scopus 로고
    • Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements
    • Mojica FJ, Diez-Villasenor C, Garcia-Martinez J, Soria E. Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements. J Mol Evol 2005;60:174-182.
    • (2005) J Mol Evol , vol.60 , pp. 174-182
    • Mojica, F.J.1    Diez-Villasenor, C.2    Garcia-Martinez, J.3    Soria, E.4
  • 7
    • 15844390228 scopus 로고    scopus 로고
    • CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies
    • Pourcel C, Salvignol G, Vergnaud G. CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies. Microbiology 2005;151:653-663.
    • (2005) Microbiology , vol.151 , pp. 653-663
    • Pourcel, C.1    Salvignol, G.2    Vergnaud, G.3
  • 8
    • 34248400310 scopus 로고    scopus 로고
    • Haft DH, Selengut J, Mongodin EF, Nelson KE. A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLo S Comput Biol 2005;1:e60.
    • Haft DH, Selengut J, Mongodin EF, Nelson KE. A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLo S Comput Biol 2005;1:e60.
  • 9
    • 0037079680 scopus 로고    scopus 로고
    • A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis
    • Makarova KS, Aravind L, Grishin NV, Rogozin IB, Koonin EV. A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis. Nucleic Acids Res 2002;30: 482-496.
    • (2002) Nucleic Acids Res , vol.30 , pp. 482-496
    • Makarova, K.S.1    Aravind, L.2    Grishin, N.V.3    Rogozin, I.B.4    Koonin, E.V.5
  • 10
    • 34248374277 scopus 로고    scopus 로고
    • A putative RNA-interference-based immune system in prokaryotes: Computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action
    • Makarova KS, Grishin NV, Shabalina SA, Wolf YI, Koonin EV. A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action. Biol Direct 2006;1:7.
    • (2006) Biol Direct , vol.1 , pp. 7
    • Makarova, K.S.1    Grishin, N.V.2    Shabalina, S.A.3    Wolf, Y.I.4    Koonin, E.V.5
  • 13
    • 39149142575 scopus 로고    scopus 로고
    • CRISPR-a widespread system that provides acquired resistance against phages in bacteria and archaea
    • Sorek R, Kunin V, Hugenholtz P. CRISPR-a widespread system that provides acquired resistance against phages in bacteria and archaea. Nat Rev Microbiol 2008;6:181-186.
    • (2008) Nat Rev Microbiol , vol.6 , pp. 181-186
    • Sorek, R.1    Kunin, V.2    Hugenholtz, P.3
  • 16
    • 33744503676 scopus 로고    scopus 로고
    • Crystal structure of hypothetical protein TTHB192 from Thermus thermophilus HB8 reveals a new protein family with an RNA recognition motif-like domain
    • Ebihara A, Yao M, Masui R, Tanaka I, Yokoyama S, Kuramitsu S. Crystal structure of hypothetical protein TTHB192 from Thermus thermophilus HB8 reveals a new protein family with an RNA recognition motif-like domain. Protein Sci 2006;15:1494-1499.
    • (2006) Protein Sci , vol.15 , pp. 1494-1499
    • Ebihara, A.1    Yao, M.2    Masui, R.3    Tanaka, I.4    Yokoyama, S.5    Kuramitsu, S.6
  • 17
    • 58149306337 scopus 로고    scopus 로고
    • X-ray crystal structure of a CRISPR-associated protein, Cse2, from Thermus thermophilus HB8
    • Agari Y, Yokoyama S, Kuramitsu S, Shinkai A. X-ray crystal structure of a CRISPR-associated protein, Cse2, from Thermus thermophilus HB8. Proteins 2008;73:1063-1067.
    • (2008) Proteins , vol.73 , pp. 1063-1067
    • Agari, Y.1    Yokoyama, S.2    Kuramitsu, S.3    Shinkai, A.4
  • 18
    • 0015955554 scopus 로고
    • Description of Thermus thermophilus (Yoshida and Oshima) com. nov., a non-sporulating thermophilic bacterium from a Japanese thermal spa
    • Oshima T, Imahori K. Description of Thermus thermophilus (Yoshida and Oshima) com. nov., a non-sporulating thermophilic bacterium from a Japanese thermal spa. Int J Syst Bacteriol 1974;24:102-112.
    • (1974) Int J Syst Bacteriol , vol.24 , pp. 102-112
    • Oshima, T.1    Imahori, K.2
  • 19
    • 34248359835 scopus 로고    scopus 로고
    • Transcription activation mediated by a cyclic AMP receptor protein from Thermus thermophilus HB8
    • ShinkaiA,Kira S,Nakagawa N, Kashihara A, KuramitsuS,Yokoyama S. Transcription activation mediated by a cyclic AMP receptor protein from Thermus thermophilus HB8. J Bacteriol 2007;189:3891-3901.
    • (2007) J Bacteriol , vol.189 , pp. 3891-3901
    • Shinkai, A.1    Kira, S.2    Nakagawa, N.3    Kashihara, A.4    Kuramitsu, S.5    Yokoyama, S.6
  • 20
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • Otwinowski Z, Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 1997;276:307-326.
    • (1997) Methods Enzymol , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 22
    • 0035207615 scopus 로고    scopus 로고
    • Map-likelihood phasing
    • Terwilliger TC. Map-likelihood phasing. Acta Crystallogr D 2001;57: 1763-1775.
    • (2001) Acta Crystallogr D , vol.57 , pp. 1763-1775
    • Terwilliger, T.C.1
  • 25
    • 0032790081 scopus 로고    scopus 로고
    • McRee DE. XtalView/Xfit-A versatile program for manipulating atomic coordinates and electron density. J Struct Biol 1999;125: 156-165.
    • McRee DE. XtalView/Xfit-A versatile program for manipulating atomic coordinates and electron density. J Struct Biol 1999;125: 156-165.
  • 26
    • 0028103275 scopus 로고
    • The CCP4 suite: Programs for protein crystallography
    • Collaborative Computational Project Number 4
    • Collaborative Computational Project Number 4. The CCP4 suite: programs for protein crystallography. Acta Crystallogr D 1994;50: 760-763.
    • (1994) Acta Crystallogr D , vol.50 , pp. 760-763
  • 27
    • 13444307044 scopus 로고    scopus 로고
    • Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
    • Krissinel E, Henrick K. Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Crystallogr D 2004;60:2256-2268.
    • (2004) Acta Crystallogr D , vol.60 , pp. 2256-2268
    • Krissinel, E.1    Henrick, K.2
  • 28
    • 36448991500 scopus 로고    scopus 로고
    • Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG. Clustal W and Clustal X version 2.0. Bioinformatics 2007;23:2947-2948
    • Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG. Clustal W and Clustal X version 2.0. Bioinformatics 2007;23:2947-2948.
  • 29
    • 0043123208 scopus 로고    scopus 로고
    • ESPript/ENDscript: Extracting and rendering sequence and 3D information from atomic structures of proteins
    • Gouet P, Robert X, Courcelle E. ESPript/ENDscript: extracting and rendering sequence and 3D information from atomic structures of proteins. Nucleic Acids Res 2003;31:3320-3323.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3320-3323
    • Gouet, P.1    Robert, X.2    Courcelle, E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.