Chapter 5 Practical Aspects of Membrane Proteins Crystallization in Bicelles

Current Topics in Membranes

Volumn 63, Issue , 2009, Pages 109-125

  Faham, Salem ^a   Ujwal, Rachna ^a   Abramson, Jeff ^a   Bowie, James U ^b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 66049157840     PISSN: 10635823     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S1063-5823(09)63005-2     Document Type: Review

References (44)

1. Andersson A., and Maler L. NMR solution structure and dynamics of motilin in isotropic phospholipid bicellar solution. Journal of Biomolecular NMR 24 (2002) 103-112
2. Arnold A., Labrot T., Oda R., and Dufourc E.J. Cation modulation of bicelle size and magnetic alignment as revealed by solid-state NMR and electron microscopy. Biophysical Journal 83 (2002) 2667-2680
3. Aussenac F., Lavigne B., and Dufourc E.J. Toward bicelle stability with ether-linked phospholipids: Temperature, composition, and hydration diagrams by 2H and 31P solid-state NMR. Langmuir 21 (2005) 7129-7135
4. Barbosa-Barros L., De la Maza A., Walther P., Estelrich J., and Lopez O. Morphological effects of ceramide on DMPC/DHPC bicelles. Journal de Microscopie 230 (2008) 16-26
5. Carpenter E.P., Beis K., Cameron A.D., and Iwata S. Overcoming the challenges of membrane protein crystallography. Current Opinion in Structural Biolology 18 (2008) 581-586
6. Cheng A., Hummel B., Qiu H., and Caffrey M. A simple mechanical mixer for small viscous lipid-containing samples. Chemistry and Physics of Lipids 95 (1998) 11-21
7. Cherezov V., Clogston J., Papiz M.Z., and Caffrey M. Room to move: Crystallizing membrane proteins in swollen lipidic mesophases. Journal of Molecular Biology 357 (2006) 1605-1618
8. Cherezov V., Rosenbaum D.M., Hanson M.A., Rasmussen S.G., Thian F.S., Kobilka T.S., et al. High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor. Science 318 (2007) 1258-1265
9. Chou J.J., Kaufman J.D., Stahl S.J., Wingfield P.T., and Bax A. Micelle-induced curvature in a water-insoluble HIV-1 Env peptide revealed by NMR dipolar coupling measurement in stretched polyacrylamide gel. Journal of the American Chemical Society 124 (2002) 2450-2451
10. Czerski L., and Sanders C.R. Functionality of a membrane protein in bicelles. Analytical Biochemistry 284 (2000) 327-333
11. Faham S., Boulting G.L., Massey E.A., Yohannan S., Yang D., and Bowie J.U. Crystallization of bacteriorhodopsin from bicelle formulations at room temperature. Protein Science 14 (2005) 836-840
12. Faham S., and Bowie J.U. Bicelle crystallization: A new method for crystallizing membrane proteins yields a monomeric bacteriorhodopsin structure. Journal of Molecular Biology 316 (2002) 1-6
13. Guan L., Smirnova I.N., Verner G., Nagamori S., and Kaback H.R. Manipulating phospholipids for crystallization of a membrane transport protein. Proceedings of the National Academy of Sciences of the United States of America 103 (2006) 1723-1726
14. Hunte C., and Richers S. Lipids and membrane protein structures. Current Opinion in Structural Biolology 18 (2008) 406-411
15. Koga Y., and Morii H. Recent advances in structural research on ether lipids from archaea including comparative and physiological aspects. Bioscience, Biotechnology, and Biochemistry 69 (2005) 2019-2034
16. Kurisu G., Zhang H., Smith J.L., and Cramer W.A. Structure of the cytochrome b6f complex of oxygenic photosynthesis: Tuning the cavity. Science 302 (2003) 1009-1014
17. Landau E.M., and Rosenbusch J.P. Lipidic cubic phases: A novel concept for the crystallization of membrane proteins. Proceedings of the National Academy of Sciences of the United States of America 93 (1996) 14532-14535
18. Lange C., Nett J.H., Trumpower B.L., and Hunte C. Specific roles of protein-phospholipid interactions in the yeast cytochrome bc1 complex structure. The EMBO Journal 20 (2001) 6591-6600
19. Lee S.Y., Lee A., Chen J., and MacKinnon R. Structure of the KvAP voltage-dependent K+ channel and its dependence on the lipid membrane. Proceedings of the National Academy of Sciences of the United States of America 102 (2005) 15441-15446
20. Lind J., Nordin J., and Maler L. Lipid dynamics in fast-tumbling bicelles with varying bilayer thickness: Effect of model transmembrane peptides. Biochimica et Biophysica Acta, (2008) 2526-2534
21. Liu Z., Yan H., Wang K., Kuang T., Zhang J., Gui L., et al. Crystal structure of spinach major light-harvesting complex at 2.72 A resolution. Nature 428 (2004) 287-292
22. Luchette P.A., Vetman T.N., Prosser R.S., Hancock R.E., Nieh M.P., Glinka C.J., et al. Morphology of fast-tumbling bicelles: A small angle neutron scattering and NMR study. Biochimica et Biophysica Acta 1513 (2001) 83-94
23. Luecke H., Schobert B., Richter H.T., Cartailler J.P., and Lanyi J.K. Structure of bacteriorhodopsin at 1.55 Å resolution. Journal of Molecular Biology 291 (1999) 899-911
24. Luecke H., Schobert B., Stagno J., Imasheva E.S., Wang J.M., Balashov S.P., et al. Crystallographic structure of xanthorhodopsin, the light-driven proton pump with a dual chromophore. Proceedings of the National Academy of Sciences of the United States of America 105 (2008) 16561-16565
25. McKibbin C., Farmer N.A., Jeans C., Reeves P.J., Khorana H.G., Wallace B.A., et al. Opsin stability and folding: Modulation by phospholipid bicelles. Journal of Molecular Biology 374 (2007) 1319-1332
26. Nieh M.P., Raghunathan V.A., Glinka C.J., Harroun T.A., Pabst G., and Katsaras J. Magnetically alignable phase of phospholipid "bicelle" mixtures is a chiral nematic made up of wormlike micelles. Langmuir 20 (2004) 7893-7897
27. Nollert P. Lipidic cubic phases as matrices for membrane protein crystallization. Methods 34 (2004) 348-353
28. Nollert P., and Landau E.M. Enzymic release of crystals from lipidic cubic phases. Biochemical Society Transactions 26 (1998) 709-713
29. Ostermeier C., Iwata S., Ludwig B., and Michel H. Fv fragment-mediated crystallization of the membrane protein bacterial cytochrome c oxidase. Nature Structural Biology 2 (1995) 842-846
30. Ostermeier C., and Michel H. Crystallization of membrane proteins. Current Opinion in Structural Biolology 7 (1997) 697-701
31. Ottiger M., and Bax A. Characterization of magnetically oriented phospholipid micelles for measurement of dipolar couplings in macromolecules. Journal of Biomolecular NMR 12 (1998) 361-372
32. Poget S.F., Cahill S.M., and Girvin M.E. Isotropic bicelles stabilize the functional form of a small multidrug-resistance pump for NMR structural studies. Journal of the American Chemical Society 129 (2007) 2432-2433
33. Prive G.G., Verner G.E., Weitzman C., Zen K.H., Eisenberg D., and Kaback H.R. Fusion proteins as tools for crystallization: The lactose permease from Escherichia coli. Acta Crystallogrphica Section D, Biological Crystallogrphy 50 (1994) 375-379
34. Prosser R.S., Hwang J.S., and Vold R.R. Magnetically aligned phospholipid bilayers with positive ordering: A new model membrane system. Biophysical Journal 74 (1998) 2405-2418
35. Rasmussen S.G., Choi H.J., Rosenbaum D.M., Kobilka T.S., Thian F.S., Edwards P.C., et al. Crystal structure of the human beta2 adrenergic G-protein-coupled receptor. Nature 450 (2007) 383-387
36. Sanders C.R., and Prosser R.S. Bicelles: A model membrane system for all seasons?. Structure 6 (1998) 1227-1234
37. Sanii L.S., Schill A.W., Moran C.E., and El-Sayed M.A. The protonation-deprotonation kinetics of the protonated Schiff base in bicelle bacteriorhodopsin crystals. Biophysical Journal 89 (2005) 444-451
38. Shinzawa-Itoh K., Aoyama H., Muramoto K., Terada H., Kurauchi T., Tadehara Y., et al. Structures and physiological roles of 13 integral lipids of bovine heart cytochrome c oxidase. The EMBO Journal 26 (2007) 1713-1725
39. Tiburu E.K., Moton D.M., and Lorigan G.A. Development of magnetically aligned phospholipid bilayers in mixtures of palmitoylstearoylphosphatidylcholine and dihexanoylphosphatidylcholine by solid-state NMR spectroscopy. Biochimica et Biophysica Acta 1512 (2001) 206-214
40. Triba M.N., Devaux P.F., and Warschawski D.E. Effects of lipid chain length and unsaturation on bicelles stability. A phosphorus NMR study. Biophysical Journal 91 (2006) 1357-1367
41. Triba M.N., Warschawski D.E., and Devaux P.F. Reinvestigation by phosphorus NMR of lipid distribution in bicelles. Biophysical Journal 88 (2005) 1887-1901
42. Ujwal R., Cascio D., Colletier J.P., Faham S., Zhang J., Toro L., et al. The crystal structure of mouse VDAC1 at 2.3 A resolution reveals mechanistic insights into metabolite gating. Proceedings of the National Academy of Sciences of the United States of America 105 (2008) 17742-17747
43. van Dam L., Karlsson G., and Edwards K. Direct observation and characterization of DMPC/DHPC aggregates under conditions relevant for biological solution NMR. Biochimica et Biophysica Acta 1664 (2004) 241-256
44. Vold R.R., Prosser R.S., and Deese A.J. Isotropic solutions of phospholipid bicelles: A new membrane mimetic for high-resolution NMR studies of polypeptides. Journal of Biomolecular NMR 9 (1997) 329-335