-
2
-
-
33846799228
-
Variation in evolutionary processes at different codon positions
-
Bofkin, L. Goldman, N. (2007) Variation in evolutionary processes at different codon positions. Molec. Biol. Evoln, 24, 513 521.
-
(2007)
Molec. Biol. Evoln
, vol.24
, pp. 513-521
-
-
Bofkin, L.1
Goldman, N.2
-
3
-
-
24644490579
-
A comparison of reversible jump MCMC algorithms for DNA sequence segmentation using hidden Markov models
-
Boys, R. J. Henderson, D. A. (2001) A comparison of reversible jump MCMC algorithms for DNA sequence segmentation using hidden Markov models. Comput. Sci. Statist., 33, 35 49.
-
(2001)
Comput. Sci. Statist.
, vol.33
, pp. 35-49
-
-
Boys, R.J.1
Henderson, D.A.2
-
4
-
-
4444274988
-
A Bayesian approach to DNA sequence segmentation
-
Boys, R. J. Henderson, D. A. (2004) A Bayesian approach to DNA sequence segmentation. Biometrics, 60, 573 588.
-
(2004)
Biometrics
, vol.60
, pp. 573-588
-
-
Boys, R.J.1
Henderson, D.A.2
-
5
-
-
0034360451
-
Detecting homogeneous segments in DNA sequences by using hidden Markov models
-
Boys, R. J., Henderson, D. A. Wilkinson, D. J. (2000) Detecting homogeneous segments in DNA sequences by using hidden Markov models. Appl. Statist., 49, 269 285.
-
(2000)
Appl. Statist.
, vol.49
, pp. 269-285
-
-
Boys, R.J.1
Henderson, D.A.2
Wilkinson, D.J.3
-
6
-
-
84937730674
-
Explaining the Gibbs sampler
-
Casella, G. George, E. I. (1992) Explaining the Gibbs sampler. Am. Statistn, 46, 167 174.
-
(1992)
Am. Statistn
, vol.46
, pp. 167-174
-
-
Casella, G.1
George, E.I.2
-
7
-
-
2242491935
-
Computational and inferential difficulties with mixture posterior distributions
-
Celeux, G., Hurn, M. Robert, C. P. (2000) Computational and inferential difficulties with mixture posterior distributions. J. Am. Statist. Ass., 95, 957 970.
-
(2000)
J. Am. Statist. Ass.
, vol.95
, pp. 957-970
-
-
Celeux, G.1
Hurn, M.2
Robert, C.P.3
-
8
-
-
34248213721
-
Detecting non-coding selective pressure in coding regions
-
Chen, H. Blanchette, M. (2007) Detecting non-coding selective pressure in coding regions. BMC Evoln Biol., 7, suppl. 1, S9.
-
(2007)
BMC Evoln Biol.
, vol.7
, Issue.SUPPL. 1
, pp. 9
-
-
Chen, H.1
Blanchette, M.2
-
9
-
-
0003516147
-
-
Cambridge. Cambridge University Press.
-
Durbin, R., Eddy, S. R., Krogh, A. Mitchison, G. (1998) Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids. Cambridge : Cambridge University Press.
-
(1998)
Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids.
-
-
Durbin, R.1
Eddy, S.R.2
Krogh, A.3
Mitchison, G.4
-
10
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
Felsenstein, J. (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Molec. Evoln, 17, 368 376.
-
(1981)
J. Molec. Evoln
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
11
-
-
0030034795
-
A hidden Markov model approach to variation among sites in rate of evolution
-
Felsenstein, J. Churchill, G. A. (1996) A hidden Markov model approach to variation among sites in rate of evolution. Molec. Biol. Evoln, 13, 93 104.
-
(1996)
Molec. Biol. Evoln
, vol.13
, pp. 93-104
-
-
Felsenstein, J.1
Churchill, G.A.2
-
12
-
-
0031268341
-
Factorial hidden markov models
-
Ghahramani, Z. Jordan, M. I. (1997) Factorial hidden markov models. Mach. Learn., 29, 245 273.
-
(1997)
Mach. Learn.
, vol.29
, pp. 245-273
-
-
Ghahramani, Z.1
Jordan, M.I.2
-
13
-
-
0028168856
-
A codon-based model of nucleotide substitution for protein-coding DNA sequences
-
Goldman, N. Yang, Z. (1994) A codon-based model of nucleotide substitution for protein-coding DNA sequences. Molec. Biol. Evoln, 11, 725 736.
-
(1994)
Molec. Biol. Evoln
, vol.11
, pp. 725-736
-
-
Goldman, N.1
Yang, Z.2
-
14
-
-
77956889087
-
Reversible jump Markov chain Monte Carlo computation and Bayesian model determination
-
Green, P. (1995) Reversible jump Markov chain Monte Carlo computation and Bayesian model determination. Biometrika, 82, 711 732.
-
(1995)
Biometrika
, vol.82
, pp. 711-732
-
-
Green, P.1
-
15
-
-
0022376704
-
Dating the human-ape splitting by a molecular clock of mitochondrial DNA
-
Hasegawa, M., Kishino, H. Yano, T. (1985) Dating the human-ape splitting by a molecular clock of mitochondrial DNA. J. Molec. Evoln, 22, 160 174.
-
(1985)
J. Molec. Evoln
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
16
-
-
27544493059
-
Discriminating between rate heterogeneity and interspecific recombination in DNA sequence alignments with phylogenetic factorial hidden Markov models
-
Husmeier, D. (2005) Discriminating between rate heterogeneity and interspecific recombination in DNA sequence alignments with phylogenetic factorial hidden Markov models. Bioinformatics, 21, ii166 ii172.
-
(2005)
Bioinformatics
, vol.21
-
-
Husmeier, D.1
-
18
-
-
0037358827
-
Detecting recombination in 4-taxa DNA sequence alignments with Bayesian hidden Markov models and Markov chain Monte Carlo
-
Husmeier, D. McGuire, G. (2003) Detecting recombination in 4-taxa DNA sequence alignments with Bayesian hidden Markov models and Markov chain Monte Carlo. Molec. Biol. Evoln, 20, 315 337.
-
(2003)
Molec. Biol. Evoln
, vol.20
, pp. 315-337
-
-
Husmeier, D.1
McGuire, G.2
-
19
-
-
0034791569
-
Detection of recombination in DNA multiple alignments with hidden Markov models
-
Husmeier, D. Wright, F. (2001) Detection of recombination in DNA multiple alignments with hidden Markov models. J. Computnl Biol., 8, 401 427.
-
(2001)
J. Computnl Biol.
, vol.8
, pp. 401-427
-
-
Husmeier, D.1
Wright, F.2
-
20
-
-
22544479764
-
Markov chain monte carlo methods and the label switching problem in bayesian mixture modeling.
-
Jasra, A., Holmes, C. C. Stephens, D. A. (2005) Markov chain monte carlo methods and the label switching problem in bayesian mixture modeling. Statist. Sci., 20, 50 67.
-
(2005)
Statist. Sci.
, vol.20
, pp. 50-67
-
-
Jasra, A.1
Holmes, C.C.2
Stephens, D.A.3
-
21
-
-
34547675965
-
An empirical codon model for protein sequence evolution
-
Kosiol, C., Holmes, I. Goldman, N. (2007) An empirical codon model for protein sequence evolution. Molec. Biol. Evoln, 24, 1464 1479.
-
(2007)
Molec. Biol. Evoln
, vol.24
, pp. 1464-1479
-
-
Kosiol, C.1
Holmes, I.2
Goldman, N.3
-
23
-
-
2142812683
-
HIV-1 genetic subtype A/B recombinant strain causing an explosive epidemic in injecting drug users in Kaliningrad
-
Liitsola, K., Tashkinova, I., Laukkanen, T., Korovina, G., Smolskaja, T., Momot, O., Mashkilleyson, N., Chaplinskas, S., Brummer-Korvenkontio, H., Vanhatalo, J., Leinikki, P. Salminen, M. O. (1998) HIV-1 genetic subtype A/B recombinant strain causing an explosive epidemic in injecting drug users in Kaliningrad. AIDS, 12, 1907 1919.
-
(1998)
AIDS
, vol.12
, pp. 1907-1919
-
-
Liitsola, K.1
Tashkinova, I.2
Laukkanen, T.3
Korovina, G.4
Smolskaja, T.5
Momot, O.6
Mashkilleyson, N.7
Chaplinskas, S.8
Brummer-Korvenkontio, H.9
Vanhatalo, J.10
Leinikki, P.11
Salminen, M.O.12
-
24
-
-
0026708873
-
Analyzing the mosaic structure of genes
-
Mayard Smith, J. (1992) Analyzing the mosaic structure of genes. J. Molec. Evoln, 34, 126 129.
-
(1992)
J. Molec. Evoln
, vol.34
, pp. 126-129
-
-
Mayard Smith, J.1
-
25
-
-
0034048880
-
A Bayesian method for detecting past recombination events in DNA multiple alignments
-
McGuire, G., Wright, F. Prentice, M. (2000) A Bayesian method for detecting past recombination events in DNA multiple alignments. J. Computnl Biol., 7, 159 170.
-
(2000)
J. Computnl Biol.
, vol.7
, pp. 159-170
-
-
McGuire, G.1
Wright, F.2
Prentice, M.3
-
26
-
-
21444455535
-
Dual multiple change-point model leads to more accurate recombination detection
-
Minin, V. N., Dorman, K. S., Fang, F. Suchard, M. A. (2005) Dual multiple change-point model leads to more accurate recombination detection. Bioinformatics, 21, 3034 3042.
-
(2005)
Bioinformatics
, vol.21
, pp. 3034-3042
-
-
Minin, V.N.1
Dorman, K.S.2
Fang, F.3
Suchard, M.A.4
-
27
-
-
10344262074
-
Phylogeny and substitution rates of angiosperm actin genes
-
Moniz de Sa, M. Drouin, G. (1996) Phylogeny and substitution rates of angiosperm actin genes. Molec. Biol. Evoln, 13, 1198 1212.
-
(1996)
Molec. Biol. Evoln
, vol.13
, pp. 1198-1212
-
-
Moniz De Sa, M.1
Drouin, G.2
-
28
-
-
29144462537
-
In silico identification of functional regions in proteins
-
Nimrod, G., Glaser, F., Steinberg, D., Ben-Tal, N. Pupko, T. (2005) In silico identification of functional regions in proteins. Bioinformatics, 21, i328 i337.
-
(2005)
Bioinformatics
, vol.21
-
-
Nimrod, G.1
Glaser, F.2
Steinberg, D.3
Ben-Tal, N.4
Pupko, T.5
-
30
-
-
0024610919
-
A tutorial on hidden Markov models and selected applications in speech recognition
-
Rabiner, L. (1989) A tutorial on hidden Markov models and selected applications in speech recognition. Proc. IEEE, 77, 257 286.
-
(1989)
Proc. IEEE
, vol.77
, pp. 257-286
-
-
Rabiner, L.1
-
31
-
-
0037910313
-
Patterns of transitional mutation biases within and among mammalian genomes
-
Rosenberg, M. S., Subramanian, S. Kumar, S. (2003) Patterns of transitional mutation biases within and among mammalian genomes. Molec. Biol. Evoln, 20, 988 993.
-
(2003)
Molec. Biol. Evoln
, vol.20
, pp. 988-993
-
-
Rosenberg, M.S.1
Subramanian, S.2
Kumar, S.3
-
32
-
-
0036205377
-
TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
-
Schmidt, H. A., Strimmer, K., Vingron, M. Von Haeseler, A. (2002) TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics, 18, 502 504.
-
(2002)
Bioinformatics
, vol.18
, pp. 502-504
-
-
Schmidt, H.A.1
Strimmer, K.2
Vingron, M.3
Von Haeseler, A.4
-
33
-
-
1542537849
-
Combining phylogenetic and hidden Markov models in biosequence analysis
-
Siepel, A. Haussler, D. (2004) Combining phylogenetic and hidden Markov models in biosequence analysis. J. Computnl Biol., 11, 413 428.
-
(2004)
J. Computnl Biol.
, vol.11
, pp. 413-428
-
-
Siepel, A.1
Haussler, D.2
-
34
-
-
0042243482
-
Inferring spatial phylogenetic variation along nucleotide sequences: A multiple changepoint model
-
Suchard, M. A., Weiss, R. E., Dorman, K. S. Sinsheimer, J. S. (2003) Inferring spatial phylogenetic variation along nucleotide sequences: a multiple changepoint model. J. Am. Statist. Ass., 98, 427 437.
-
(2003)
J. Am. Statist. Ass.
, vol.98
, pp. 427-437
-
-
Suchard, M.A.1
Weiss, R.E.2
Dorman, K.S.3
Sinsheimer, J.S.4
-
35
-
-
65949104376
-
Improved Gibbs sampling for detecting mosaic structures in DNA sequence alignments
-
In. pp. Coimbra. Centro Internacional de Matematica.
-
Werhli, A., Grzegorczyk, M., Chiang, M. Husmeier, D. (2006) Improved Gibbs sampling for detecting mosaic structures in DNA sequence alignments. In Statistics in Genomics and Proteomics, pp. 23 34. Coimbra : Centro Internacional de Matematica.
-
(2006)
Statistics in Genomics and Proteomics
, pp. 23-34
-
-
Werhli, A.1
Grzegorczyk, M.2
Chiang, M.3
Husmeier, D.4
-
36
-
-
0026644652
-
Sequence diversity within the argF, fbp and recA genes of natural isolates of Neisseria meningitidis: Interspecies recombinations within the argF gene
-
Zhou, J. Spratt, B. G. (1992) Sequence diversity within the argF, fbp and recA genes of natural isolates of Neisseria meningitidis: interspecies recombinations within the argF gene. Molec. Microbiol., 6, 2135 2146.
-
(1992)
Molec. Microbiol.
, vol.6
, pp. 2135-2146
-
-
Zhou, J.1
Spratt, B.G.2
|