메뉴 건너뛰기




Volumn 33, Issue 1, 2009, Pages 54-62

Combined haplotype relative risk (CHRR): A general and simple Genetic association test that combines trios and unrelatedcase-controls

Author keywords

Case control association study; HRR; Missing data; TDT; Trios

Indexed keywords

ALLELE; ARTICLE; CASE CONTROL STUDY; DATA ANALYSIS; DOMINANT INHERITANCE; FAMILY STUDY; GENE FREQUENCY; GENETIC ASSOCIATION; GENOTYPE; HAPLOTYPE; MATHEMATICAL MODEL; METHODOLOGY; PREVALENCE; PROGENY; RECESSIVE INHERITANCE; RISK ASSESSMENT; STATISTICAL ANALYSIS; STATISTICAL MODEL;

EID: 65849415868     PISSN: 07410395     EISSN: 10982272     Source Type: Journal    
DOI: 10.1002/gepi.20356     Document Type: Article
Times cited : (10)

References (28)
  • 1
    • 0037371161 scopus 로고    scopus 로고
    • Informative missingness in genetic association studies: Case-parent designs
    • Allen AS, Rathouz PJ, Satten GA. 2003. Informative missingness in genetic association studies: case-parent designs. Am J Hum Genet 72:671-680.
    • (2003) Am J Hum Genet , vol.72 , pp. 671-680
    • Allen, A.S.1    Rathouz, P.J.2    Satten, G.A.3
  • 3
    • 4344581237 scopus 로고    scopus 로고
    • New approach to association testing in case-parent designs under informative parental missingness
    • Chen YH. 2004. New approach to association testing in case-parent designs under informative parental missingness. Genet Epidemiol 27:131-140.
    • (2004) Genet Epidemiol , vol.27 , pp. 131-140
    • Chen, Y.H.1
  • 4
    • 0033237335 scopus 로고    scopus 로고
    • A generalization of the transmission/disequilibrium test for uncertain haplotype transmission
    • Clayton D. 1999. A generalization of the transmission/disequilibrium test for uncertain haplotype transmission. Am J Hum Genet 65:1170-1177.
    • (1999) Am J Hum Genet , vol.65 , pp. 1170-1177
    • Clayton, D.1
  • 5
    • 0028944305 scopus 로고
    • A note on the application of the transmission disequilibrium test when a parent is missing
    • Curtis DR, Sham PC. 1995. A note on the application of the transmission disequilibrium test when a parent is missing. Am J Hum Genet 56:811-812.
    • (1995) Am J Hum Genet , vol.56 , pp. 811-812
    • Curtis, D.R.1    Sham, P.C.2
  • 6
    • 0032714352 scopus 로고    scopus 로고
    • Genomic control for association studies
    • Devlin B, Roeder K. 1999. Genomic control for association studies. Biometrics 55:997-1004.
    • (1999) Biometrics , vol.55 , pp. 997-1004
    • Devlin, B.1    Roeder, K.2
  • 8
    • 34247585477 scopus 로고    scopus 로고
    • A simple and improved correction for population stratification in case-control studies
    • Epstein MP, Allen AS, Satten GA. 2007. A simple and improved correction for population stratification in case-control studies. Am J Hum Genet 80:921-930.
    • (2007) Am J Hum Genet , vol.80 , pp. 921-930
    • Epstein, M.P.1    Allen, A.S.2    Satten, G.A.3
  • 9
    • 0029075560 scopus 로고
    • The transmission/disequilibrium test: History, subdivision and admixture
    • Ewens WJ, Spielman RS. 1995. The transmission/disequilibrium test: history, subdivision and admixture. Am J Hum Genet 57: 455-464.
    • (1995) Am J Hum Genet , vol.57 , pp. 455-464
    • Ewens, W.J.1    Spielman, R.S.2
  • 10
    • 0023235253 scopus 로고
    • Haplotype relative risks: An easy reliable way to construct a proper control sample for risk calculations
    • Falk CT, Rubinstein P. 1987. Haplotype relative risks: an easy reliable way to construct a proper control sample for risk calculations. Ann Hum Genet 51:227-233.
    • (1987) Ann Hum Genet , vol.51 , pp. 227-233
    • Falk, C.T.1    Rubinstein, P.2
  • 11
    • 30344477530 scopus 로고    scopus 로고
    • Impact of non-ignorable missingness on genetic tests of linkage and/or association using case-parents trios
    • Guo CY, Cui J, Cupples LA. 2005a. Impact of non-ignorable missingness on genetic tests of linkage and/or association using case-parents trios. BMC Genet 6:S90.
    • (2005) BMC Genet , vol.6
    • Guo, C.Y.1    Cui, J.2    Cupples, L.A.3
  • 12
    • 21044453345 scopus 로고    scopus 로고
    • Expectation maximization algorithm based haplotype relative risk (EM-HRR): Test of linkage disequilibrium using incomplete caseparents trios
    • Guo CY, Destefano AL, Lunetta KL, Dupuis J, Cupples LA. 2005b. Expectation maximization algorithm based haplotype relative risk (EM-HRR): test of linkage disequilibrium using incomplete caseparents trios. Hum Hered 59:125-135.
    • (2005) Hum Hered , vol.59 , pp. 125-135
    • Guo, C.Y.1    Destefano, A.L.2    Lunetta, K.L.3    Dupuis, J.4    Cupples, L.A.5
  • 13
    • 0027521860 scopus 로고
    • The haplotype-relative-risk (HRR) method for analysis of association in nuclear families
    • Knapp M, Seuchter SA, Baur MP. 1993. The haplotype-relative-risk (HRR) method for analysis of association in nuclear families. Am J Hum Genet 52:1085-1093.
    • (1993) Am J Hum Genet , vol.52 , pp. 1085-1093
    • Knapp, M.1    Seuchter, S.A.2    Baur, M.P.3
  • 14
    • 0033989379 scopus 로고    scopus 로고
    • A Monte Carlo procedure for two-stage tests with correlated data
    • Martin ER, Kaplan NL. 2000. A Monte Carlo procedure for two-stage tests with correlated data. Genet Epidemiol 18:48-62.
    • (2000) Genet Epidemiol , vol.18 , pp. 48-62
    • Martin, E.R.1    Kaplan, N.L.2
  • 15
    • 7744226680 scopus 로고    scopus 로고
    • Combining the transmission disequilibrium test and case-control methodology using generalized logistic regression
    • Nagelkerke NJ, Hoebee B, Teunis P, Kimman TG. 2004. Combining the transmission disequilibrium test and case-control methodology using generalized logistic regression. Eur J Hum Genet 12: 964-970.
    • (2004) Eur J Hum Genet , vol.12 , pp. 964-970
    • Nagelkerke, N.J.1    Hoebee, B.2    Teunis, P.3    Kimman, T.G.4
  • 16
    • 0024536523 scopus 로고
    • Statistical properties of the haplotype relative risk
    • Ott J. 1989. Statistical properties of the haplotype relative risk. Genet Epidemiol 6:127-130.
    • (1989) Genet Epidemiol , vol.6 , pp. 127-130
    • Ott, J.1
  • 18
    • 0033358548 scopus 로고    scopus 로고
    • Use of unlinked genetic markers to detect population stratification in association studies
    • Pritchard JK, Rosenberg NA. 1999. Use of unlinked genetic markers to detect population stratification in association studies. Am J Hum Genet 65:220-228.
    • (1999) Am J Hum Genet , vol.65 , pp. 220-228
    • Pritchard, J.K.1    Rosenberg, N.A.2
  • 22
    • 11244309378 scopus 로고    scopus 로고
    • Robust transmission/ disequilibrium test for incomplete family genotypes
    • Sebastiani P, Abad MM, Alpargu G, Ramoni MF. 2004. Robust transmission/ disequilibrium test for incomplete family genotypes. Genetics 168:2329-2337.
    • (2004) Genetics , vol.168 , pp. 2329-2337
    • Sebastiani, P.1    Abad, M.M.2    Alpargu, G.3    Ramoni, M.F.4
  • 24
    • 0027377799 scopus 로고
    • Transmission test for linkage disequilibrium: The sinsulin gene region and insulin dependent diabetes mellitus
    • Spielman RS, McGinnis RE, Ewens WJ. 1993. Transmission test for linkage disequilibrium: the sinsulin gene region and insulin dependent diabetes mellitus. Am J Hum Genet 52:506-516.
    • (1993) Am J Hum Genet , vol.52 , pp. 506-516
    • Spielman, R.S.1    McGinnis, R.E.2    Ewens, W.J.3
  • 25
    • 0026494911 scopus 로고
    • A haplo-type-based 'haplo-type relative risk' approach to detecting allelic associations. Hum Hered
    • 42:337=346
    • Terwilliger JD, Ott J. 1992. A haplo-type-based 'haplo-type relative risk' approach to detecting allelic associations. Hum Hered 42:337=346.
    • (1992)
    • Terwilliger, J.D.1    Ott, J.2
  • 26
    • 0029064537 scopus 로고
    • Mapping disease genes: Family-based association studies
    • Thomson G. 1995. Mapping disease genes: family-based association studies. Am J Hum Genet 57:487-498.
    • (1995) Am J Hum Genet , vol.57 , pp. 487-498
    • Thomson, G.1
  • 27
    • 18544383722 scopus 로고    scopus 로고
    • Family-based analysis using a dense single-nucleotide polymorphism-based map defines genetic variation at PSORS1, the major psoriasis-susceptibility locus
    • Veal CD, Capon F, Allen MH, Heath EK, Evans JC, Jones A, Patel S, Burden D, Tillman D, Barker JNWN et al. 2002. Family-based analysis using a dense single-nucleotide polymorphism-based map defines genetic variation at PSORS1, the major psoriasis-susceptibility locus. Am J Hum Genet 71: 554-564.
    • (2002) Am J Hum Genet , vol.71 , pp. 554-564
    • Veal, C.D.1    Capon, F.2    Allen, M.H.3    Heath, E.K.4    Evans, J.C.5    Jones, A.6    Patel, S.7    Burden, D.8    Tillman, D.9    Barker, J.N.W.N.10
  • 28
    • 0033362166 scopus 로고    scopus 로고
    • Allowing for missing parents in genetic studies of case-parents triads
    • Weinberg CR. 1999. Allowing for missing parents in genetic studies of case-parents triads. Am J Hum Genet 64:1186-1193.
    • (1999) Am J Hum Genet , vol.64 , pp. 1186-1193
    • Weinberg, C.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.