Quantitative genetic analysis of biomass and wood chemistry of Populus under different nitrogen levels

New Phytologist

Volumn 182, Issue 4, 2009, Pages 878-890

  Novaes, Evandro ^a   Osorio, Luis ^a   Drost, Derek R ^a   Miles, Brianna L ^a   Boaventura Novaes, Carolina R D ^a   Benedict, Catherine ^a   Dervinis, Christopher ^a   Yu, Qibin ^a   Sykes, Robert ^b   Davis, Mark ^b   Martin, Timothy A ^a   Peter, Gary F ^a   Kirst, Matias ^a  

^a UNIVERSITY OF FLORIDA   (United States)

^b U S DEPARTMENT OF ENERGY   (United States)

Author keywords

Carbon allocation; Carbon partitioning; Nitrogen; Populus deltoides; Populus trichocarpa; Quantitative trait loci (QTLs); Wood quality

Indexed keywords

FERTILIZER; NITROGEN;

BIOFUEL; BIOMASS ALLOCATION; CELLULOSE; DECIDUOUS TREE; ENVIRONMENTAL CUE; ETHANOL; GENETIC ANALYSIS; GERMPLASM; GROWTH RATE; HERITABILITY; LIGNIN; NITROGEN; NUTRIENT AVAILABILITY; PERENNIAL PLANT; PLEIOTROPY; QUANTITATIVE ANALYSIS; WOOD;

ARTICLE; ASPEN; BIOMASS; CELL CLONE; CHEMISTRY; DRUG EFFECT; GENETIC LINKAGE; GENETICS; GROWTH, DEVELOPMENT AND AGING; MASS SPECTROMETRY; PHENOTYPE; PLANT; QUANTITATIVE TRAIT; QUANTITATIVE TRAIT LOCUS; REPRODUCIBILITY; WOOD;

BIOMASS; CLONE CELLS; FERTILIZERS; GENETIC LINKAGE; MASS SPECTROMETRY; NITROGEN; PHENOTYPE; PLANT SHOOTS; POPULUS; QUANTITATIVE TRAIT LOCI; QUANTITATIVE TRAIT, HERITABLE; REPRODUCIBILITY OF RESULTS; WOOD;

POPULUS; POPULUS DELTOIDES; POPULUS TRICHOCARPA;

EID: 65549107375     PISSN: 0028646X     EISSN: 14698137     Source Type: Journal    
DOI: 10.1111/j.1469-8137.2009.02785.x     Document Type: Article

References (60)

1. Bonan GB. 2008. Forests and climate change: forcings, feedbacks, and the climate benefits of forests. Science 320 : 1444 1449.
2. Bradshaw HD Jr., Stettler RF. 1995. Molecular genetics of growth and development in Populus. IV. Mapping QTLs with large effects on growth, form, and phenology traits in a forest tree. Genetics 139 : 963 973.
3. Browning BL. 1967. Methods of wood chemistry. New York, NY, USA : Interscience Publishers.
4. Calenge F, Saliba-Colombani V, Mahieu S, Loudet O, Daniel-Vedele F, Krapp A. 2006. Natural variation for carbohydrate content in Arabidopsis. Interaction with complex traits dissected by quantitative genetics. Plant Physiology 141 : 1630 1643. (Pubitemid 44223310)
5. Canadell JG, Raupach MR. 2008. Managing forests for climate change mitigation. Science 320 : 1456 1457.
6. Chang H, Sarkanen KV. 1973. Species variation in lignin - effect on rate of kraft delignification. TAPPI 56 : 132 134.
7. Chen F, Dixon RA. 2007. Lignin modification improves fermentable sugar yields for biofuel production. Nature Biotechnology 25 : 759 761. (Pubitemid 47052188)
8. Churchill GA, Doerge RW. 1994. Empirical threshold values for quantitative trait mapping. Genetics 138 : 963 971. (Pubitemid 24337818)
9. Cooke JE, Martin TA, Davis JM. 2005. Short-term physiological and developmental responses to nitrogen availability in hybrid poplar. New Phytologist 167 : 41 52. (Pubitemid 40885827)
10. Cooke JEK, Brown KA, Wu R, Davis JM. 2003. Gene expression associated with N-induced shifts in resource allocation in poplar. Plant, Cell & Environment 26 : 757 770. (Pubitemid 36631992)
11. Drost DR, Novaes E, Boaventura-Novaes CRD, Benedict CI, Brown RS, Yin T, Tuskan GA, Kirst M. 2009. A microarray-based genotyping and genetic mapping approach for highly heterozygous outcrossing species localizes a large fraction of the unassembled Populus trichocarpa genome sequence. Plant Journal. doi
12. Evans RJ, Milne TA. 1987. Molecular characterization of the pyrolysis of biomass. 1. Fundamentals. Energy & Fuels 1 : 123 137.
13. 2. Proceedings of the National Academy of Sciences, USA 104 : 14 014 14 019. (Pubitemid 350003328)
14. Gilmour AR, Cullis BR, Welham SJ, Thompson R. 2002. ASReml user guide release 1.0. Hemel Hempstead, UK : VSN International.
15. Gutierrez RA, Stokes TL, Thum K, Xu X, Obertello M, Katari MS, Tanurdzic M, Dean A, Nero DC, McClung CR et al. 2008. Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1. Proceedings of the National Academy of Sciences, USA 105 : 4939 4944.
16. Hocking D. 1971. Preparation and Use of a Nutrient Solution for Culturing Seedlings of Lodgepole Pine and White Spruce with Selected Bibliography. Northern Forestry Research Centre Information Report Nor-X-L. Edmonton, Canada : Canadian Forest Service, Department of the Environment.
17. Hu WJ, Harding SA, Lung J, Popko JL, Ralph J, Stokke DD, Tsai CJ, Chiang VL. 1999. Repression of lignin biosynthesis promotes cellulose accumulation and growth in transgenic trees. Nature Biotechnology 17 : 808 812. (Pubitemid 29365112)
18. Ibrahim L, Proe MF, Cameron AD. 1997. Main effects of nitrogen supply and drought stress upon whole-plant carbon allocation in poplar. Canadian Journal of Forest Research 27 : 1413 1419. (Pubitemid 28000445)
19. Jansen RC, Nap JP. 2001. Genetical genomics: the added value from segregation. Trends in Genetics 17 : 388 391. (Pubitemid 32545383)
20. Kirst M, Myburg AA, De Leon JPG, Kirst ME, Scott J, Sederoff R. 2004. Coordinated genetic regulation of growth and lignin revealed by quantitative trait locus analysis of cDNA microarray data in an interspecific backcross of Eucalyptus. Plant Physiology 135 : 2368 2378. (Pubitemid 39182812)
21. Kleiner KW, Raffa KF, Ellis DD, McCown BH. 1998. Effect of nitrogen availability on the growth and phytochemistry of hybrid poplar and the efficacy of the Bacillus thuringiensis cry1a(a) d-endotoxin on gypsy moth. Canadian Journal of Forest Research 28 : 1055 1067. (Pubitemid 28554149)
22. Koch KE. 1997. Molecular crosstalk and the regulation of C- and N-responsive genes. In : Foyer C, Quick P, eds. A molecular approach to primary metabolism in plants. London, UK : Taylor and Francis Inc., 105 124.
23. Kosambi DD. 1944. The estimation of map distances from recombination values. Annals of Eugenics 12 : 172 175.
24. Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L. 1987. MapMaker: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1 : 174 181.
25. Laperche A, Brancourt-Hulmel M, Heumez E, Gardet O, Hanocq E, Devienne-Barret F, Le Gouis J. 2007. Using genotype × nitrogen interaction variables to evaluate the QTL involved in wheat tolerance to nitrogen constraints. Theoretical and Applied Genetics 115 : 399 415. (Pubitemid 47087414)
26. Lenoir J, Gegout JC, Marquet PA, de Ruffray P, Brisse H. 2008. A significant upward shift in plant species optimum elevation during the 20th century. Science 320 : 1768 1771.
27. Li L, Zhou Y, Cheng X, Sun J, Marita JM, Ralph J, Chiang VL. 2003. Combinatorial modification of multiple lignin traits in trees through multigene cotransformation. Proceedings of the National Academy of Sciences, USA 100 : 4939 4944. (Pubitemid 36457832)
28. ® system for mixed models. Cary, NC, USA : SAS Institute Inc.
29. Ma CX, Yu Q, Berg A, Drost D, Novaes E, Fu G, Yap JS, Tan A, Kirst M, Cui Y et al. 2008. A statistical model for testing the pleiotropic control of phenotypic plasticity for a count trait. Genetics 179 : 627 636.
30. MacMillan K, Emrich K, Piepho HP, Mullins CE, Price AH. 2006. Assessing the importance of genotype × environment interaction for root traits in rice using a mapping population ii: conventional QTL analysis. Theoretical and Applied Genetics 113 : 953 964. (Pubitemid 44272985)
31. Mehrabian M, Allayee H, Stockton J, Lum PY, Drake TA, Castellani LW, Suh M, Armour C, Edwards S, Lamb J et al. 2005. Integrating genotypic and expression data in a segregating mouse population to identify 5-lipoxygenase as a susceptibility gene for obesity and bone traits. Nature Genetics 37 : 1224 1233. (Pubitemid 41568705)
32. Mehrtens F, Kranz H, Bednarek P, Weisshaar B. 2005. The Arabidopsis transcription factor MYB12 is a flavonol-specific regulator of phenylpropanoid biosynthesis. Plant Physiology 138 : 1083 1096. (Pubitemid 43793183)
33. Meng H, Vera I, Che N, Wang X, Wang SS, Ingram-Drake L, Schadt EE, Drake TA, Lusis AJ. 2007. Identification of Abcc6 as the major causal gene for dystrophic cardiac calcification in mice through integrative genomics. Proceedings of the National Academy of Sciences, USA 104 : 4530 4535. (Pubitemid 47186259)
34. Morreel K, Goeminne G, Storme V, Sterck L, Ralph J, Coppieters W, Breyne P, Steenackers M, Georges M, Messens E et al. 2006. Genetical metabolomics of flavonoid biosynthesis in Populus: a case study. Plant Journal 47 : 224 237. (Pubitemid 43974630)
35. 2-enriched atmosphere. Nature 411 : 469 472. (Pubitemid 32494390)
36. Palenchar PM, Kouranov A, Lejay LV, Coruzzi GM. 2004. Genome-wide patterns of carbon and nitrogen regulation of gene expression validate the combined carbon and nitrogen (CN)-signaling hypothesis in plants. Genome Biology 5 : R91.
37. Pitre FE, Cooke JEK, Mackay JJ. 2007a. Short-term effects of nitrogen availability on wood formation and fibre properties in hybrid poplar. Trees - Structure and Function 21 : 249 259. (Pubitemid 46318785)
38. Pitre FE, Pollet B, Lafarguette F, Cooke JE, MacKay JJ, Lapierre C. 2007b. Effects of increased nitrogen supply on the lignification of poplar wood. Journal of Agricultural and Food Chemistry 55 : 10 306 10 314.
39. Plomion C, Leprovost G, Stokes A. 2001. Wood formation in trees. Plant Physiology 127 : 1513 1523. (Pubitemid 34050021)
40. Pregitzer KS, Dickmann DI, Hendrick R, Nguyen PV. 1990. Whole-tree carbon and nitrogen partitioning in young hybrid poplars. Tree Physiology 7 : 79 93.
41. 2. Plant, Cell & Environment 29 : 1730 1741. (Pubitemid 44141729)
42. Rae AM, Pinel MPC, Bastien C, Sabatti M, Street NR, Tucker J, Dixon C, Marron N, Dillen SY, Taylor G. 2008. QTL for yield in bioenergy Populus: identifying G × E interactions from growth at three contrasting sites. Tree Genetics & Genomes 4 : 97 112. (Pubitemid 350165468)
43. 2: quantitative trait loci for biomass in Populus. New Phytologist 175 : 59 69. (Pubitemid 46854923)
44. Rauh BL, Basten C, Buckler ES. 2002. Quantitative trait loci analysis of growth response to varying nitrogen sources in Arabidopsis thaliana. Theoretical and Applied Genetics 104 : 743 750. (Pubitemid 36053150)
45. Rosenzweig C, Karoly D, Vicarelli M, Neofotis P, Wu Q, Casassa G, Menzel A, Root TL, Estrella N, Seguin B et al. 2008. Attributing physical and biological impacts to anthropogenic climate change. Nature 453 : 353 357.
46. Scheible WR, Morcuende R, Czechowski T, Fritz C, Osuna D, Palacios-Rojas N, Schindelasch D, Thimm O, Udvardi MK, Stitt M. 2004. Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen. Plant Physiology 136 : 2483 2499. (Pubitemid 41071292)
47. Sticklen MB. 2008. Plant genetic engineering for biofuel production: towards affordable cellulosic ethanol. Nature Reviews. Genetics 9 : 433 443.
48. Sultan SE. 2000. Phenotypic plasticity for plant development, function and life history. Trends in Plant Science 5 : 537 542. (Pubitemid 32099972)
49. Sykes R, Kodrzycki B, Tuskan G, Foutz K, Davis M. 2008. Within tree variability of lignin composition in Populus. Wood Science and Technology 42 : 649 661.
50. Talukder ZI, McDonald AJ, Price AH. 2005. Loci controlling partial resistance to rice blast do not show marked QTL × environment interaction when plant nitrogen status alters disease severity. New Phytologist 168 : 455 464. (Pubitemid 43919595)
51. Tuskan GA, DiFazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A et al. 2006. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 313 : 1596 1604. (Pubitemid 44414027)
52. Wang SC, Basten CJ, Zeng ZB 2007. Windows QTL Cartographer 2.5. Raleigh, NC, USA : Department of Statistics, North Carolina State University, (http://statgen.ncsu.edu/qtlcart/WQTLCart.htm)
53. Weigelt K, Kuster H, Radchuk R, Muller M, Weichert H, Fait A, Fernie AR, Saalbach I, Weber H. 2008. Increasing amino acid supply in pea embryos reveals specific interactions of N and C metabolism, and highlights the importance of mitochondrial metabolism. Plant Journal 55 : 909 926.
54. Wu R, Bradshaw HD, Stettler RF. 1998. Developmental quantitative genetics of growth in Populus. Theoretical and Applied Genetics 97 : 1110 1119. (Pubitemid 29014636)
55. Wu RL. 1998. Genetic mapping of QTLs affecting tree growth and architecture in Populus: implication for ideotype breeding. Theoretical and Applied Genetics 96 : 447 457. (Pubitemid 28178549)
56. Wu RL, Remington DL, MacKay JJ, McKeand SE, O'Malley DM. 1999. Average effect of a mutation in lignin biosynthesis in loblolly pine. Theoretical and Applied Genetics 99 : 705 710. (Pubitemid 29432525)
57. Wullschleger S, Yin TM, DiFazio SP, Tschaplinski TJ, Gunter LE, Davis MF, Tuskan GA. 2005. Phenotypic variation in growth and biomass distribution for two advanced-generation pedigrees of hybrid poplar. Canadian Journal of Forest Research - Revue Canadienne de Recherche Forestiere 35 : 1779 1789. (Pubitemid 43035745)
58. Yu Q, Li B, Nelson CD, McKeand SE, Batista VB, Mullin TJ. 2006. Association of the cad-n1 allele with increased stem growth and wood density in full-sib families of loblolly pine. Tree Genetics & Genomes 2 : 98 108. (Pubitemid 44197968)
59. Zeng ZB. 1993. Theoretical basis for separation of multiple linked gene effects in mapping quantitative trait loci. Proceedings of the National Academy of Sciences, USA 90 : 10 972 10 976.
60. Zhang D, Zhang Z, Yang K. 2006. QTL analysis of growth and wood chemical content traits in an interspecific backcross family of white poplar (Populus tomentosa × P. bolleana) × P. tomentosa. Canadian Journal of Forest Research - Revue Canadienne de Recherche Forestiere 36 : 2015 2023. (Pubitemid 44494161)