Glacial refugia in a maritime temperate climate: Cicada (Kikihia subalpina) mtDNA phylogeography in New Zealand

Molecular Ecology

Volumn 18, Issue 9, 2009, Pages 1995-2009

  Marshall, David C ^a   Hill, Kathy B R ^a   Fontaine, Kathryn M ^a   Buckley, Thomas R ^b   Simon, Chris ^a,c  

^a UNIVERSITY OF CONNECTICUT   (United States)

^b LANDCARE RESEARCH   (New Zealand)

^c VICTORIA UNIVERSITY OF WELLINGTON   (New Zealand)

Author keywords

Biogeography; Cicadidae; Cook Strait; Palaeohabitats; Reproductive isolation; Southern Hemisphere

Indexed keywords

CICADA; CICADIDAE; KIKIHIA SUBALPINA;

MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; BIOLOGICAL MODEL; DNA SEQUENCE; ECOSYSTEM; GENE FLOW; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; HEMIPTERA; MALE; MOLECULAR EVOLUTION; NEW ZEALAND; PHYLOGENY; POPULATION DYNAMICS; POPULATION GENETICS; TREE; VOCALIZATION;

ANIMALS; DNA, MITOCHONDRIAL; ECOSYSTEM; EVOLUTION, MOLECULAR; GENE FLOW; GENETIC VARIATION; GENETICS, POPULATION; GEOGRAPHY; HEMIPTERA; MALE; MODELS, GENETIC; NEW ZEALAND; PHYLOGENY; POPULATION DYNAMICS; SEQUENCE ANALYSIS, DNA; TREES; VOCALIZATION, ANIMAL;

EID: 65549107233     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2009.04155.x     Document Type: Article

References (92)

1. Alloway BV, Lowe DJ, Barrell DJA et al 2007) Towards a climate event stratigraphy for New Zealand over the past 30 000 years (NZ-INTIMATE project). Journal of Quaternary Science, 22, 9 35. (Pubitemid 46117327)
2. Apte S, Smith PJ, Wallis GP (2007) Mitochondrial phylogeography of New Zealand freshwater crayfishes, Paranephrops spp. Molecular Ecology, 16, 1897 1908. (Pubitemid 46639978)
3. Barrell DJA, Alloway BV, Schulmeister J, Newnham RM (2005) Towards a climate event stratigraphy for New Zealand over the past 30 000 years. In : Institute of Geological and Nuclear Sciences Science Report 2005/07, p. 12pp. and poster. Institute of Geological and Nuclear Sciences Ltd, Lower Hutt, New Zealand.
4. Barrows TT, Stone JO, Fifield LK, Cresswell RG (2002) The timing of the Last Glacial Maximum in Australia. Quaternary Science Reviews, 21, 159 173. (Pubitemid 34067510)
5. Beheregaray LB (2008) Twenty years of phylogeography: the state of the field and the challenges for the Southern Hemisphere. Molecular Ecology, 17, 3754 3774.
6. de Boer AJ, Duffels JP (1996) Historical biogeography of the cicadas of Wallacea, New Guinea and the West Pacific: a geotectonic explanation. Palaeogeography, Palaeoclimatology, Palaeoecology, 124, 153 177. (Pubitemid 26309263)
7. Brower AVZ (1994) Rapid morphological radiation and convergence among races of the butterfly Heliconius erato inferred from patterns of mitochondrial DNA evolution. Proceedings of the National Academy of Science, USA, 91, 6491 6495. (Pubitemid 24200687)
8. Bryant D, Moulton V (2004) Neighbor-Net: an agglomerative method for the construction of phylogenetic networks. Molecular Biology and Evolution, 21, 255 265. (Pubitemid 38314614)
9. Buckley TR, Cordeiro M, Marshall DC, Simon C (2006) Differentiating between hypotheses of lineage sorting and introgression in New Zealand alpine cicadas (Maoricicada Dugdale). Systematic Biology, 55, 411 425.
10. Carstens BC, Knowles LL (2007) Shifting distributions and speciation: species divergence during rapid climate change. Molecular Ecology, 16, 619 627. (Pubitemid 46161083)
11. Carter RM (2005) A New Zealand climatic template back to c. 3.9 Ma: ODP Site 1119, Canterbury Bight, south-west Pacific Ocean, and its relationship to onland successions. Journal of the Royal Society of New Zealand, 35, 9 42. (Pubitemid 41397885)
12. Carter RM, Gammon P (2004) New Zealand maritime glaciation: millenial-scale southern climate change since 3.9 Ma. Science, 304, 1659 1662. (Pubitemid 38765855)
13. Cognato AI (2006) Standard percent DNA sequence difference for insects does not predict species boundaries. Journal of Economic Entomology, 99, 1037 1045. (Pubitemid 44645585)
14. Craw D, Burridge CP, Upton P, Rowe DL, Waters JM (2008) Evolution of biological dispersal corridors through a tectonically active mountain range in New Zealand. Journal of Biogeography, 35, 1790 1802.
15. Crosby TK, Dugdale JS, Watt JC (1998) Area codes for recording specimen localities in the New Zealand subregion. New Zealand Journal of Zoology, 25, 175 183. (Pubitemid 128463964)
16. Cumber RA (1952) Notes on the biology of Melampsalta cruentata Fabricius (Hemiptera-Homoptera: Cicadidae), with special reference to the nymphal stages. Transactions of the Entomological Society of London, 103, 219 238.
17. Davis MB (1983) Quaternary history of deciduous forests of eastern North American and Europe. Annals of the Missouri Botanical Garden, 70, 550 563.
18. Davis MB, Shaw RG (2001) Range shifts and adaptive responses to Quaternary climate change. Science, 292, 673 679. (Pubitemid 32385531)
19. Drost F, Renwick J, Bhaskaran B, Oliver H, McGregor J (2007) A simulation of New Zealand's climate during the Last Glacial Maximum. Quaternary Science Reviews, 26, 2505 2525. (Pubitemid 350122828)
20. Drummond AJ, Rambaut A (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology, 7, 214.
21. Drummond AJ, Rambaut A, Shapiro B, Pybus OG (2006) Bayesian coalescent inference of past population dynamics from molecular sequences. Molecular Biology and Evolution, 22, 1185 1192.
22. Dugdale JS, Fleming CA (1978) New Zealand cicadas of the genus Maoricicada (Homoptera: Tibicinidae). New Zealand Journal of Zoology, 5, 295 340.
23. Edwards SV, Beerli P (2000) Gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies. Evolution, 54, 1839 1854.
24. Fleming CA (1962) New Zealand biogeography. A paleontologist's approach. Tuatara, 10, 53 108.
25. Fleming CA (1971) A new species of cicada from rock fans in southern Wellington, with a review of three species with similar songs and habitat. New Zealand Journal of Science, 14, 443 479.
26. Fleming CA (1975) Adaptive radiation in New Zealand cicadas. Proceedings of the American Philosophical Society, 119, 298 306.
27. Fleming CA (1984) The cicada genus Kikihia (Dugdale) (Hemiptera, Homoptera). Part 1. The New Zealand green foliage cicadas. National Museum of New Zealand Records, 2, 191 206.
28. Gardner RC, De Lange PJ, Keeling DJ et al 2004) A late Quaternary phylogeography for Metrosideros (Myrtaceae) in New Zealand inferred from chloroplast DNA haplotypes. Biological Journal of the Linnean Society, 83, 399 412. (Pubitemid 39508998)
29. Godinho R, Crespo EG, Ferrand N (2008) The limits of mtDNA phylogeography: complex patterns of population history in a highly structured Iberian lizard are only revealed by the use of nuclear markers. Molecular Ecology, 17, 4670 4683.
30. Goldberg J, Trewick SA, Patterson AM (2008) Evolution of New Zealand's terrestrial fauna: a review of molecular evidence. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences, 363, 3319 3334.
31. Greaves SNJ, Chapple DG, Daugherty CH, Gleeson DM, Ritchie PA (2008) Genetic divergences pre-date Pleistocene glacial cycles in the New Zealand speckled skink, Oligosoma infrapunctatum. Journal of Biogeography, 35, 853 864.
32. Hasegawa M, Kishino H, Yano T (1985) Dating the human-ape split by a molecular clock by mitochondrial DNA. Journal of Molecular Evolution, 22, 160 174. (Pubitemid 16227864)
33. Heath JE (1967) Temperature responses of the periodical '17-year' cicada, Magicicada cassini (Homoptera: Cicadidae). American Midland Naturalist, 77, 64 76.
34. Heath JE, Hanegan JL, Wilkin PJ, Heath MS (1971) Adaptation of the thermal responses of insects. American Zoologist, 11, 147 158.
35. Hewitt G (2000) The genetic legacy of the Quaternary ice ages. Nature, 405, 907 913. (Pubitemid 30435039)
36. Hewitt G (2004) Genetic consequences of climatic oscillations in the Quaternary. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences, 359, 183 195. (Pubitemid 38231471)
37. Hewitt GM (1996) Some genetic consequences of ice ages, and their role in divergence and speciation. Biological Journal of the Linnean Society, 58, 247 276. (Pubitemid 26389802)
38. Hill KBR, Marshall DC, Cooley JR (2005) Crossing Cook Strait: Possible human transportation and establishment of two New Zealand cicadas from North Island to South Island. New Zealand Entomologist, 28, 67 76.
39. Hill KBR, Marshall DC, Simon C, Chambers GK (2008) Surviving glacial ages within the biotic gap: phylogeography of the New Zealand cicada Maoricicada campbelli. Journal of Biogeography, doi
40. Hoikkala A (2006) Inheritance of male sound characteristics in Drosophila species. In : Insect Sounds and Communication: Physiology, Behaviour, Ecology and Evolution (eds Drosopoulos S, Claridge MF pp. 167 178. CRC Press, Taylor & Francis Group, Boca Raton, FL.
41. Huelsenbeck JP, Bollback JP, Levine AM (2002) Inferring the root of a phylogenetic tree. Systematic Biology, 51, 32 43. (Pubitemid 35169406)
42. Huson DH (1998) SplitsTree: a program for analyzing and visualizing evolutionary data. Bioinformatics, 14, 68 73. (Pubitemid 28397727)
43. Huson DH, Bryant D (2006) Application of phylogenetic networks in evolutionary studies. Molecular Biology and Evolution, 23, 254 267. (Pubitemid 43100040)
44. Ibarguchi G, Friesen VL, Lougheed SC (2006) Defeating numts: Semi-pure mitochondrial DNA from eggs and simple purification methods for field-collected wildlife tissues. Genome, 49, 1438 1450. (Pubitemid 46640332)
45. Jansson R, Dynesius M (2002) The fate of clades in a world of recurrent climatic change: Milankovitch oscillations and evolution. Annual Review of Ecology and Systematics, 33, 741 777. (Pubitemid 36035156)
46. Jordan S, Simon C, Polhemus D (2003) Molecular systematics and adaptive radiation of Hawaii's endemic damselfly genus Megalagrion. Systematic Biology, 52, 89 109.
47. Jordan S, Simon C, Foote D, Englund RA (2005) Phylogeographic patterns of Hawaiian Megalagrion damselflies (Odonata: Coenagrionidae) correlate with Pleistocene island boundaries. Molecular Ecology, 14, 3457 3470. (Pubitemid 43919949)
48. Leschen R, Buckley TR, Harman HM (2008) Determining the origin and age of the Westland beech (Nothofagus) gap, New Zealand, using fungus beetle genetics. Molecular Ecology, 17, 1256 1276.
49. Lewis KB, Carter L, Davey FJ (1994) The opening of Cook Strait: interglacial tidal scour and aligning basins at a subduction to transform plate edge. Marine Geology, 116, 293 312. (Pubitemid 24425807)
50. Liggins L, Chapple DG, Daugherty CH, Ritchie PA (2008) A SINE of restricted gene flow across the Alpine Fault: phylogeography of the New Zealand common skink (Oligosoma nigriplantare polychroma). Molecular Ecology.
51. Lloyd BD (2003) The demographic history of the New Zealand short-tailed bat Mystacina tuberculata inferred from modified control region sequences. Molecular Ecology, 12, 1895 1911. (Pubitemid 36815024)
52. Logan D (2006) Nymphal development and lifecycle length of Kikihia ochrina (Walker) (Homoptera: Cicadidae). The Weta, 31, 19 22.
53. Markgraf V, McGlone M, Hope G (1995) Neogene Paleoenvironmental and Paleoclimatic Change In Southern Temperate Ecosystems - A Southern Perspective. Trends in Ecology and Evolution, 10, 143 147.
54. Marra M, Leschen RAB (2004) Late Quaternary paleoecology from fossil beetle communities in the Awatere Valley, South Island, New Zealand. Journal of Biogeography, 31, 571 586. (Pubitemid 38459056)
55. Marra MJ (2008) Quaternary fossil beetles from New Zealand. New Zealand Entomologist, 31, 5 16.
56. Marshall DC, Slon K, Cooley JR, Hill KBR, Simon C (2008) Steady Plio-Pleistocene diversification and a 2-Million-Year sympatry threshold in a New Zealand cicada radiation. Molecular Phylogenetics and Evolution, 48, 1054 1066.
57. McGlone M (1985) Plant biogeography and the late Cenozoic history of New Zealand. New Zealand Journal of Botany, 23, 723 749. (Pubitemid 17250842)
58. McGlone MS, Duncan RP, Heenan PB (2001) Endemism, species selection and the origin and distribution of the vascular plant flora of New Zealand. Journal of Biogeography, 28, 199 216.
59. McKenzie DW (2005) Reed New Zealand Atlas. Reed Publishing, Auckland.
60. McKinnon GE, Jordan GJ, Vaillancourt RE, Steane DA, Potts BM (2003) Glacial refugia and reticulate evolution: the case of the Tasmanian eucalypts. Philosophical Transactions of the Royal Society of London Series B, 359, 275 284.
61. Metcalf L (2002) A Photographic Guide to Trees of New Zealand. New Holland Publishers (NZ) Ltd, Auckland, New Zealand.
62. Mix AC, Bard E, Schneider R (2001) Environmental processes of the ice age: land, oceans, glaciers (EPILOG). Quaternary Science Reviews, 20, 627 657. (Pubitemid 32176543)
63. Moore WS (1995) Inferring phylogenies from mtDNA variation: mitochondrial-gene trees versus nuclear-gene trees. Evolution, 49, 718 726.
64. Neiman M, Lively CM (2004) Pleistocene glaciation is implicated in the phylogeographical structure of Potamopyrgus antipodarum, a New Zealand snail. Molecular Ecology, 13, 3085 3098. (Pubitemid 39290232)
65. Newnham RM, Lowe DJ, Williams PW (1999) Quaternary environmental change in New Zealand: a review. Progress in Physical Geography, 23, 567 610. (Pubitemid 30061941)
66. Overpeck JT, Webb RS, Webb T III (1992) Mapping eastern North American vegetation change of the past 18 ka: No-analogs and the future. Geology, 20, 1071 1074. (Pubitemid 24407256)
67. Petit RJ, Aguinagalde I, de Beaulieu JL et al 2003) Glacial refugia: hotspots but not melting pots of genetic diversity. Science, 300, 1563 1565. (Pubitemid 36682886)
68. Posada D, Crandall KA (1998) Modeltest: testing the model of DNA substitution. Bioinformatics, 14, 817 818. (Pubitemid 28552116)
69. Provan J, Bennett KD (2008) Phylogeographic insights into cryptic glacial refugia. Trends in Ecology and Evolution, 23, 564 571.
70. Ragge DR, Reynolds WJ (1998) The Songs of the Grasshoppers and Crickets of Western Europe. Harley Books, Colchester, Essex.
71. Rambaut A, Drummond AJ (2003) Tracer v1.3, Available from http://evolve.zoo.ox.ac.uk/.
72. Reinhold K (1999) Evolutionary genetics of sex-limited traits under fluctuating selection. Journal of Evolutionary Biology, 12, 897 902. (Pubitemid 29432363)
73. Ritchie MG (2000) The inheritance of female preference functions in a mate recognition system. Proceedings of the Royal Society of London, Series B: Biological Science, 267, 327 332. (Pubitemid 30133054)
74. Rogers GM (1989) The nature of the lower North Island floristic gap. New Zealand Journal of Botany, 27. (Pubitemid 20408465)
75. Rowe KC, Heske EJ, Brown PW, Paige KN (2004) Surviving the ice: Northern refugia and postglacial recolonization. Proceedings of the National Academy of Sciences, USA, 101, 10355 10359. (Pubitemid 38924929)
76. Ruddiman WF (2001) Earth's Climate: Past and Future. W.H. Freeman and Co., New York.
77. Sanborn AF, Villet MH, Phillips PK (2004) Endothermy in African Platypleurine cicadas: the influence of body size and habitat (Hemiptera: Cicadidae). Physiological and Biochemical Zoology, 77, 816 823. (Pubitemid 40025159)
78. Schaefer JM, Denton GH, Barrell DJA et al 2006) Near-synchronous interhemispheric termination of the Last Glacial Maximum in mid-latitudes. Science, 312, 1510 1513. (Pubitemid 43865887)
79. Schäfer JM, Ivy-Ochs S, Ninnemann U et al 2001) Structure of the Last Glacial Maximum in southern mid-latitudes: terrestrial evidence from New Zealand. Eos Trans AGU, 82, Fall Meet. Suppl., Abstract PP42B-0499.
80. Schwarz G (1978) Estimating the dimension of a model. Annals of Statistics, 6, 461 464.
81. Shaw KL (1996) Polygenic inheritance of a behavioral phenotype: interspecific genetics of song in the Hawaiian cricket genus Laupala. Evolution, 50, 256 266. (Pubitemid 3035495)
82. Shepherd LD, Perrie LR, Brownsey PJ (2007) Fire and ice: volcanic and glacial impacts on the phylogeography of the New Zealand forest fern Asplenium hookerianum. Molecular Ecology, 16, 4536 4549. (Pubitemid 47620512)
83. Simon C, Frati F, Beckenbach A et al 1994) Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved PCR primers. Annals of the Entomological Society of America, 87, 651 701.
84. Smith JA, Seltzer GO, Farber DL, Rodbell DT, Finkel RC (2005) Early local Last Glacial Maximum in the Tropical Andes. Science, 308, 678 681.
85. Sueur J, Vanderpool D, Simon C, Ouvrard D, Bougoin T (2007) Molecular phylogeny of the genus Tibicina (Hemiptera, Cicadidae): rapid radiation and acoustic behaviour. Biological Journal of the Linnean Society, 91, 611 626. (Pubitemid 47222612)
86. Swofford DL (1998) paup*. Phylogenetic Analysis Using Parsimony (*and Other Methods), Version 4. Sinauer Associates, Sunderland, MA.
87. Trewick SA, Wallis GP (2001) Bridging the 'beech-gap': New Zealand invertebrate phylogeography implicates Pleistocene glaciation and Pliocene isolation. Evolution, 55, 2170 2180. (Pubitemid 34045550)
88. Wardle P (1963) Evolution and distribution of the New Zealand flora, as affected by Quaternary climates. New Zealand Journal of Botany, 1, 3 17.
89. Waters JM, Allibone RM, Wallis GP (2006) Geological subsidence, river capture, and cladogenesis of galaxiid fish lineages in central New Zealand. Biological Journal of the Linnean Society, 88, 367 376. (Pubitemid 43893956)
90. Williams JW, Jackson ST (2007) Novel climates, no-analog communities, and ecological surprises. Frontiers in Ecology and the Environment, 5, 475 482. (Pubitemid 350071683)
91. Yamamoto D, Jallon J-M, Komatsu A (1997) Genetic dissection of sexual behavior in Drosophila melanogaster. Annual Review of Entomology, 42, 551 585. (Pubitemid 27169560)
92. Zwickl DJ (2006) Genetic Algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Ph.D., The University of Texas.