Biomarker discovery in asthma-related inflammation and remodeling

Proteomics

Volumn 9, Issue 8, 2009, Pages 2163-2170

  Calvo, Florence Quesada ^a   Fillet, Marianne ^a,b   De Seny, Dominique ^a   Meuwis, Marie Alice ^a   Maree, Raphael ^a   Crahay, Céline ^a   Paulissen, Geneviève ^a   Rocks, Natacha ^a   Gueders, Maud ^a   Wehenkel, Louis ^a   Merville, Marie Paule ^a   Louis, Renaud ^a   Foidart, Jean Michel ^a   Noël, Agnes ^a   Cataldo, Didier ^a  

^a UNIVERSITY OF LIÈGE   (Belgium)

^b UNIVERSITY OF LIÈGE   (Belgium)

Author keywords

Asthma; Lung tissue profiling; Mouse model; Proteomics; SELDI TOF MS

Indexed keywords

CALCYCLIN; HISTONE H4; UBIQUITIN;

ANIMAL EXPERIMENT; ANIMAL MODEL; ARTICLE; ASTHMA; CONTROLLED STUDY; IMMUNOHISTOCHEMISTRY; MALE; MOUSE; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN PURIFICATION; PROTEOMICS; SURFACE ENHANCED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; WESTERN BLOTTING;

ANIMALS; ASTHMA; BIOLOGICAL MARKERS; BRONCHI; CELL CYCLE PROTEINS; HISTONES; INFLAMMATION; INTERCELLULAR SIGNALING PEPTIDES AND PROTEINS; MASS SPECTROMETRY; MICE; PROTEIN ARRAY ANALYSIS; S100 PROTEINS; UBIQUITIN; UTEROGLOBIN;

MUS;

EID: 65349178924     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200800643     Document Type: Article

References (28)

1. Louis, R., Lau, L. C., Bron, A. O., Roldaan, A. C. et al., The relationship between airways inflammation and asthma severity. Am. J. Respir. Crit. Care. Med. 2000, 161, 9-16.
2. Bousquet, J., Chanez, P., Lacoste, J. Y., White, R. et al., Asthma: a disease remodeling the airways. Allergy 1992, 47, 3-11.
3. Cataldo, D. D., Gueders, M. M., Rocks, N., Sounni, N. E. et al., Pathogenic role of matrix metalloproteases and their inhibitors in asthma and chronic obstructive pulmonary disease and therapeutic relevance of matrix metalloproteases inhibitors. Cell. Mol. Biol. (Noisy-le-grand) 2003, 49, 875-884.
4. Gueders, M. M., Bertholet, P., Perin, F., Rocks, N. et al., A novel formulation of inhaled doxycycline reduces allergeninduced inflammation, hyperresponsiveness and remodeling by matrix metalloproteinases and cytokines modulation in a mouse model of asthma. Biochem. Pharmacol. 2008, 75, 514-526.
5. Lange, P., Parner, J., Vestbo, J., Schnohr, P., Jensen, G., A 15-year follow-up study of ventilatory function in adults with asthma. N. Engl. J. Med. 1998, 339, 1194-1200.
6. de Seny, D., Fillet, M., Meuwis, M. A., Geurts, P. et al., Discovery of new rheumatoid arthritis biomarkers using the surface-enhanced laser desorption/ionization time-of-flight mass spectrometry ProteinChip approach. Arthritis Rheum. 2005, 52, 3801-3812.
7. de Seny, D., Fillet, M., Ribbens, C., Maree, R. et al., Monomeric Calgranulins Measured by SELDI-TOF Mass Spectrometry and Calprotectin Measured by ELISA as Biomarkers in Arthritis. Clin. Chem. 2008, 54, 1066-1075.
8. Kriegova, E., Melle, C., Kolek, V., Hutyrova, B. et al., Protein profiles of bronchoalveolar lavage fluid from patients with pulmonary sarcoidosis. Am. J. Respir. Crit. Care. Med. 2006, 173, 1145-1154.
9. Kwapiszewska, G., Meyer, M., Bogumil, R., Bohle, R. M. et al., Identification of proteins in laser-microdissected small cell numbers by SELDI-TOF and Tandem MS. BMC Biotechnol. 2004, 4, 30.
10. Merkel, D., Rist, W., Seither, P., Weith, A., Lenter, M. C., Proteomic study of human bronchoalveolar lavage fluids from smokers with chronic obstructive pulmonary disease by combining surface-enhanced laser desorption/ionizationmass spectrometry profiling with mass spectrometric protein identification. Proteomics 2005, 5, 2972-2980.
11. Meuwis, M. A., Fillet, M., Geurts, P., de Seny, D. et al., Biomarker discovery for inflammatory bowel disease, using proteomic serum profiling. Biochem. Pharmacol. 2007, 73, 1422-1433.
12. Geurts, P., Fillet, M., de Seny, D., Meuwis, M. A. et al., Proteomic mass spectra classification using decision tree based ensemble methods. Bioinformatics 2005, 21, 3138-3145.
13. Kips, J. C., Tournoy, K. G., Pauwels, R. A., Gene knockout models of asthma. Am. J. Respir. Crit. Care. Med. 2000, 162, S66-S70.
14. Sakai, K., Yokoyama, A., Kohno, N., Hamada, H., Hiwada, K., Prolonged antigen exposure ameliorates airway inflammation but not remodeling in a mouse model of bronchial asthma. Int. Arch. Allergy Immunol. 2001, 126, 126-134.
15. Tournoy, K. G., Hove, C., Grooten, J., Moerloose, K. et al., Animal models of allergen-induced tolerance in asthma: Are T-regulatory-1 cells (Tr-1) the solution for T-helper-2 cells (Th-2) in asthma? Clin. Exp. Allergy 2006, 36, 8-20.
16. Murphy, V. E., Johnson, R. F., Wang, Y. C., Akinsanya, K. et al., Proteomic study of plasma proteins in pregnant women with asthma. Respirology 2006, 11, 41-48.
17. Wu, J., Kobayashi, M., Sousa, E. A., Liu, W. et al., Differential proteomic analysis of bronchoalveolar lavage fluid in asthmatics following segmental antigen challenge. Mol. Cell Proteomics 2005, 4, 1251-1264.
18. Hall, I. P., Genetics and pulmonary medicine 8: Asthma. Thorax 1999, 54(1), 55-69.
19. Nair, M. G., Gallagher, I. J., Taylor, M. D., Loke, P. et al., Chitinase and Fizz family members are a generalized feature of nematode infection with selective upregulation of Ym1 and Fizz1 by antigen-presenting cells. Infect. Immun. 2005, 73, 385-394.
20. Liu, T., Jin, H., Ullenbruch, M., Hu, B. et al., Regulation of found in inflammatory zone 1 expression in bleomycininduced lung fibrosis: Role of IL-4/IL-13 and mediation via STAT-6. J. Immunol. 2004, 173, 3425-3431.
21. Pesce, J., Kaviratne, M., Ramalingam, T. R., Thompson, R. W. et al., The IL-21 receptor augments Th2 effector function and alternative macrophage activation. J. Clin. Invest. 2006, 116, 2044-2055.
22. Davies, D. E., Wicks, J., Powell, R. M., Puddicombe, S. M., Holgate, S. T., Airway remodeling in asthma: New insights. J. Allergy Clin. Immunol. 2003, 111, 215-225; quiz 226.
23. Klug, J., Beier, H. M., Bernard, A., Chilton, B. S. et al., Uteroglobin/Clara cell 10 kDa family of proteins: Nomenclature committee report. Ann. N Y Acad. Sci. 2000, 923, 348-354.
24. Lindahl, M., Svartz, J., Tagesson, C., Demonstration of different forms of the anti-inflammatory proteins lipocortin-1 and Clara cell protein-16 in human nasal and bronchoalveolar lavage fluids. Electrophoresis 1999, 20, 881-890.
25. Breen, E. C., Tang, K., Calcyclin (S100A6) regulates pulmonary fibroblast proliferation, morphology, and cytoskeletal organization in vitro. J. Cell. Biochem. 2003, 88, 848-854.
26. Barnes, P. J., Adcock, I. M., Ito, K., Histone acetylation and deacetylation: Importance in inflammatory lung diseases. Eur. Respir. J. 2005, 25, 552-563.
27. Tomita, K., Barnes, P. J., Adcock, I. M., The effect of oxidative stress on histone acetylation and IL-8 release. Biochem. Biophys. Res. Commun. 2003, 301, 572-577.
28. Elliott, P. J., Pien, C. S., McCormack, T. A., Chapman, I. D., Adams, J., Proteasome inhibition: A novel mechanism to combat asthma. J. Allergy Clin. Immunol. 1999, 104, 294-300.