The comparative phylogeography of east coast estuarine fishes in formerly glaciated sites: Persistence versus recolonization in cyprinodon variegatus ovinus and fundulus heteroclitus macrolepidotus

Journal of Heredity

Volumn 100, Issue 3, 2009, Pages 284-296

  Haney, Robert A ^a,d   Dionne, Michelle ^b   Puritz, Jon ^c   Rand, David M ^a  

^a BROWN UNIVERSITY   (United States)

^b Wells National Estuarine Research Reserve   (United States)

^c UNIVERSITY OF HAWAII   (United States)

^d UNIVERSITY OF CHICAGO   (United States)

Author keywords

Cyprinodon; Fundulus; Glaciation; Mitochondrial; Phylogeography

Indexed keywords

MITOCHONDRIAL DNA;

ARTICLE; CLIMATE CHANGE; CYPRINODON VARIEGATUS OVINUS; ENVIRONMENTAL CHANGE; ENVIRONMENTAL RECOLONIZATION; ESTUARINE SPECIES; FISH; FUNDULUS HETEROCLITUS MACROLEPIDOTUS; GENE LOCUS; GENETIC VARIABILITY; GLACIATION; MITOCHONDRIAL GENETICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGEOGRAPHY; PLEISTOCENE; PRIORITY JOURNAL; SPECIES DISTRIBUTION; UNITED STATES;

ANIMALS; ATLANTIC OCEAN; DNA, MITOCHONDRIAL; FUNDULIDAE; GENETIC VARIATION; GEOGRAPHY; KILLIFISHES; MUTATION; PHYLOGENY; PLOIDIES;

CYPRINODON; CYPRINODON VARIEGATUS; FUNDULUS; FUNDULUS HETEROCLITUS; PISCES;

EID: 65349137759     PISSN: 00221503     EISSN: 14657333     Source Type: Journal    
DOI: 10.1093/jhered/esn107     Document Type: Article

References (53)

1. Able KW, Felley JD. 1986. Geographical variation in Fundulus heteroclitus: tests for concordance between egg and adult morphologies. Am Zool. 26:145-157.
2. Able KW, Hagan SM, Brown SA. 2006. Habitat use, movement, and growth of young-of-the-year Fundulus spp. in southern New Jersey salt marshes: comparisons based on tag/recapture. J Exp Mar Biol Ecol. 335:177-187.
3. Adams SM, Lindmeier JB, Duvernell DD. 2006. Microsatellite analysis of the phylogeography, Pleistocene history and secondary contact hypotheses for the killifish, Fundulus heteroclitus. Mol Ecol. 15:1109-1123.
4. Allee WC. 1923. Studies in marine ecology: IV. The effect of temperature in limiting the geographic range of invertebrates of the Woods Hole littoral. Ecology. 4:341-354.
5. Bohonak AJ. 2002. IBD (isolation by distance): a program for analyses of isolation by distance. J Hered. 93:153-154.
6. Burg TM, Wilcox JL, Martin A. 2002. Isolation and characterization of polymorphic microsatellite loci in pupfish (genus Cyprinodon). Conserv Genet. 3:197-204.
7. Burnett KG, Bain LJ, Baldwin WS, Callard GV, Cohen S, Di Giulio RT, Evans DH, Gomez-Chiarri M, Hahn ME, Hoover CA, et al. 2007. Fundulus as the premier teleost model in environmental biology: opportunities for new insights using genomics. Comp Biochem Physiol Part D Genomics Proteomics. 2:257-284.
8. Chidester FE. 1920. The behavior of Fundulus heteroclitus on the salt marshes of New Jersey. Am Nat. 54:551-557.
9. Clement M, Posada D, Crandall KA. 2000. TCS: a computer program to estimate gene genealogies. Mol Ecol. 9:1657-1659.
10. Crandall KA, Templeton AR. 1993. Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction. Genetics. 134:959-969.
11. Darling JDS. 1976. Electrophoretic variation in Cyprinodon variegatus and systematics of some fishes of the subfamily Cyprinodontinae [Phd dissertation]. [New Haven (CT)]: Yale University.
12. Echelle AA, Carson EW, Echelle AF, Van Den Bussche RA, Dowling TE, Meyer A. 2005. Historical biogeography of the New-World pupfish genus Cyprinodon (Teleostei: Cyprinodontidae). Copeia. 2005:320-339.
13. Fay JC, Wu C-I. 1999. A human population bottleneck can account for the discordance between patterns of mitochondrial versus nuclear DNA variation. Mol Biol Evol. 16:1003-1005.
14. Finne KL. 2001. Phylogeographic structure of the Atlantic pupfish, Cyprinodon variegatus (Cyprinodontidae), along the eastern coast of North America: evidence from mitochondrial nucleotide sequences [master's thesis]. [Blacks-burg (VA)]: Virginia Polytechnic Institute and State University. p. 55.
15. Fu YX. 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics. 147:915-925.
16. Goldstein DB, Ruiz-Linares A, Cavalli-Sforza LL, Feldman MW. 1995. An evaluation of genetic distances for use with microsatellite loci. Genetics. 139:463-471.
17. Gonzalez-Villasenor LI, Powers DA. 1990. Mitochondrial-DNA restriction-site polymorphisms in the teleost Fundulus heteroclitus support secondary intergradation. Evolution. 44:27-37.
18. Goodman SJ. 1997. RST CALC: a collection of computer programs for calculating unbiased estimates of genetic differentiation and determining their significance for microsatellite data. Mol Ecol. 6:881-885.
19. Goudet J. 2001. FSTAT, a program to estimate and test gene diversities and fixation indices version 2.9.3 [Internet]. [cited 2007 may 27]. Available from: http://www.unil.ch/izea/softwares/fstat.html.
20. Goudet J, Raymond M, Demeeus T, Rousset F. 1996. Testing differentiation in diploid populations. Genetics. 144:1933-1940.
21. Hall T. 1999. Bioedit sequence alignment editor [Internet]. [cited 2007 June 11]. Available from: http://www.mbio.ncsu.edu/BioEdit/biodit.html.
22. Haney RA, Silliman BR, Fry AJ, Layman CA, Rand DM. 2007. The Pleistocene history of the sheepshead minnow (Cyprinodon variegatus): non-equilibrium evolutionary dynamics within a diversifying species complex. Mol Phylogenet Evol. 43:743-754.
23. Hewitt G. 2000. The genetic legacy of the Quaternary ice ages. Nature. 405:907-913.
24. Hey J, Nielsen R. 2004. Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics. 167:747-760.
25. Hickerson MJ, Cunningham CW. 2006. Nearshore fish (Pholis gunnellus) persists across the North Atlantic through multiple glacial episodes. Mol Ecol. 15:4095-4107.
26. Hudson RR. 2000. A new statistic for detecting genetic differentiation. Genetics. 155:2011-2014.
27. Hudson RR, Slatkin M, Maddison WP. 1992. Estimation of levels of gene flow from DNA sequence data. Genetics. 132:583-589.
28. Kuhner MK, Yamato J, Felsenstein J. 1998. Maximum likelihood estimation of population growth rates based on the coalescent. Genetics. 149:429-434.
29. Lambeck K, Esat TM, Potter EK. 2002. Links between climate and sea levels for the past three million years. Nature. 419:199-206.
30. Lee W, Conroy J, Howell WH, Kocher TD. 1995. Structure and evolution of teleost mitochondrial control region. J Mol Evol. 41:54-66.
31. Lotrich VA. 1975. Summer home range and movements of Fundulus heteroclitus (Pisces: Cyprinodontidae) in a tidal creek. Ecology. 56:191-198.
32. Massman WH. 1954. Marine fishes in fresh and brackish waters of Virginia rivers. Ecology. 35:75-78.
33. Morin RP, Able KW. 1983. Patterns of geographic variation in the egg morphology of the fundulid fish, Fundulus heteroclitus. Copeia. 1983:726-740.
34. Nelson JS. 1994. Fishes of the World. New York: John Wiley and Sons, Inc.
35. Nielsen R, Wakeley J. 2001. Distinguishing migration from isolation: a Markov chain Monte Carlo approach. Genetics. 158:885-896.
36. Nordlie FG. 2003. Fish communities of estuarine salt marshes of eastern North America, and comparisons with temperate estuaries of other continents. Rev Fish Biol Fish. 13:281-325.
37. Pearcy WG, Richards SW. 1962. Distribution and ecology of fishes of the Mystic River estuary, Connecticut. Ecology. 43:248-259.
38. Pielou EC. 1991. After the Ice Age. Chicago: The University of Chicago Press.
39. Powers DA, Schulte PM. 1998. Evolutionary adaptations of gene structure and expression in natural populations in relation to a changing environment: a multidisciplinary approach to address the million-year saga of a small fish. J Exp Zool. 282:71-94.
40. Ramos-Onsins SE, Rozas J. 2002. Statistical properties of new neutrality tests against population growth. Mol Biol Evol. 19:2092-2100.
41. Ropson IJ, Brown DC, Powers DA. 1990. Biochemical genetics of Fundulus heteroclitus (L.). VI. Geographical variation in the gene frequencies of 15 loci. Evolution. 44:16-26.
42. Rozas J, Rozas R. 1999. DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinfor-matics. 15:174-175.
43. Sanford E, Holzman SB, Haney RA, Rand DM, Bertness MD. 2006. Larval tolerance, gene flow, and the northern geographic range limit of fiddler crabs. Ecology. 87:2882-2894.
44. Skinner MA, Courtenay SC, Parker WR, Curry RA. 2005. Site fidelity of mummichogs (Fundulus heteroclitus) in an Atlantic Canadian estuary. Water Qual Res J Canada. 40:288-298.
45. Slatkin M. 1995. A measure of population subdivision based on microsatellite allele frequencies. Genetics. 139:457-462.
46. Smith MW, Chapman RW, Powers DA. 1998. Mitochondrial DNA analysis of Atlantic coast, Chesapeake Bay, and Delaware Bay populations of the teleost Fundulus heteroclitus indicates temporally unstable distributions over geologic time. Mol Mar Biol Biotechnol. 7:79-87.
47. Templeton AR, Crandall KA, Sing CF. 1992. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonu-clease mapping and DNA sequence data. III. Cladogram estimation. Genetics. 132:619-633.
48. Wares JP, Cunningham CW. 2001. Phylogeography and historical ecology of the North Atlantic intertidal. Evolution. 55:2455-2469. Watterson GA. 1975. On the number of segregating sites in genetical models without recombination. Theor Popul Biol. 7:256-276.
49. Wayne ML, Simonsen KL. 1998. Statistical tests of neutrality in the age of weak selection. Trends Ecol Evol. 13:236-240.
50. Weir BS, Cockerham CC. 1984. Estimating F-statistics for the analysis of population structure. Evolution. 28:1358-1370.
51. Wiens JJ, Donoghue MJ. 2004. Historical biogeography, ecology and species richness. Trends Ecol Evol. 19:639-644.
52. Wilson RJ, Gutierrez D, Gutierrez J, Martinez D, Agudo R, Monserrat VJ. 2005. Changes to the elevational limits and extent of species ranges associated with climate change. Ecol Lett. 8:1138-1146.
53. Won YJ, Hey J. 2005. Divergence population genetics of Chimpanzees. Mol Biol Evol. 22:297-307.