Developmental Validation of the PrepFiler™ Forensic DNA Extraction Kit for Extraction of Genomic DNA from Biological Samples

Journal of Forensic Sciences

Volumn 54, Issue 3, 2009, Pages 599-607

  Brevnov, Maxim G ^a   Pawar, Hemant S ^a   Mundt, Janna ^a   Calandro, Lisa M ^a   Furtado, Manohar R ^a   Shewale, Jaiprakash G ^a  

^a APPLIED BIOSYSTEMS   (United States)

Author keywords

DNA extraction; DNA isolation; DNA purification; DNA typing; Forensic science; Short tandem repeat profiling

Indexed keywords

CHLOROFORM; ENZYME INHIBITOR; GENOMIC DNA; PHENOL;

ARTICLE; BLOOD STAIN; DNA EXTRACTION; HUMAN; ISOLATION PROCEDURE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; VALIDATION PROCESS;

BLOOD; DNA; DNA FINGERPRINTING; FEMALE; HUMANS; MAGNETICS; MALE; POLYMERASE CHAIN REACTION; REPRODUCIBILITY OF RESULTS; SALIVA; SEMEN; TANDEM REPEAT SEQUENCES;

EID: 65349137014     PISSN: 00221198     EISSN: 15564029     Source Type: Journal    
DOI: 10.1111/j.1556-4029.2009.01013.x     Document Type: Article

References (33)

1. Moretti TR, Baumstark AL, Defenbaugh DA, Keys KM, Smerick JB, Budowle B. Validation of short tandem repeats (STRs) for forensic usage: performance testing of fluorescent multiplex STR systems and analysis of authentic and simulated forensic samples. J Forensic Sci 2001 46 : 647 60.
2. Butler JM. Forensic DNA typing, 2nd edn. Burlington : Elsevier Academic Press, 2005.
3. Green RL, Roinestad IC, Boland C, Hennessy LK. Developmental validation of the Quantifiler™ real-time PCR kits for the quantitation of human nuclear DNA samples. J Forensic Sci 2005 50 : 809 25.
4. ® Duo DNA Quantification Kit for simultaneous quantification of total human and human male DNA and detection of PCR inhibitors in biological samples. J Forensic Sci 2009 54 : 305 19.
5. Horsman KM, Hickey JA, Cotton RW, Landers JP, Maddox LO. Development of a human specific real-time PCR assay for the simultaneous quantitation of total genomic and male DNA. J Forensic Sci 2006 51 : 758 65.
6. Nicklas JA, Buel E. Simultaneous determination of total human and male DNA using a duplex real-time PCR assay. J Forensic Sci 2006 51 : 1005 15.
7. Swango KL, Hudlow WR, Timken MD, Buoncristiani MR. Developmental validation of a multiplex qPCR assay for assessing the quantity and quality of nuclear DNA in forensic samples. Forensic Sci Int 2007 170 : 35 45.
8. ® amplification kits for forensic DNA casework. J Forensic Sci 2002 47 : 66 96.
9. Collins PJ, Hennessy LK, Leibelt CS, Roby RK, Redder DJ, Foxall PA. Developmental validation of a single-tube amplification of the 13 CODIS STR loci, D2S1338, D19S433 and amelogenin: the AmpFlSTR® Identifiler PCR amplification kit. J Forensic Sci 2004 49 : 1265 77.
10. ® SEfiler PCR amplification kit: a new multiplex containing the highly discriminating ACTBP2 (SE33) locus. Int J Legal Med 2004 118 : 224 34.
11. ® Yfiler PCR amplification kit. J Forensic Sci 2006 51 : 64 75.
12. ® MiniFiler™ PCR amplification kit: a MiniSTR multiplex for the analysis of degraded and/or PCR inhibited DNA. J Forensic Sci 2008 53 (4 838 52.
13. Krenke BE, Tereba A, Anderson SJ, Buel E, Culhane S, Finis CJ. Validation of a 16-locus fluorescent multiplex system. J Forensic Sci 2002 47 : 773 85.
14. Krenke BE, Viculis L, Richard ML, Prinz M, Milne SC, Ladd CL, et al. Validation of a male-specific, 12-locus fluorescent short tandem repeat (STR) multiplex. Forensic Sci Int 2005 148 : 1 14.
15. Sgueglia JB, Geiger S, Davis J. Precision studies using the ABI prism 3100 genetic analyzer for forensic DNA analysis. Anal Bioanal Chem 2003 376 : 1247 54.
16. Butler JM, Buel E, Crivellente F, McCord BR. Forensic DNA typing by capillary electrophoresis using the ABI Prism 310 and 3100 genetic analyzers. Electrophoresis 2004 25 : 1397 412.
17. Micka KA, Amiott EA, Hockenberry TL, Sprecher CJ, Lins AM, Rabbach DR, et al. TWGDAM validation of a nine-locus and a four-locus fluorescent STR multiplex system. J Forensic Sci 1999 44 : 1243 57.
18. Asamura H, Sakai H, Ota M, Fukushima H. Mini Y-STR quadruplex system with short amplicon lengths for analysis of degraded DNA samples. Forensic Sci Int Genet 2007 1 : 56 61.
19. Greenspoon SA, Sykes KLV, Ban JD, Pollard A, Baisden M, Farr M, et al. Automated PCR setup for forensic casework samples using the normalization wizard and PCR setup robotic methods. Forensic Sci Int 2006 164 : 240 8.
20. 3™ expert systems software. Profiles in DNA 2007 10 : 13 5.
21. Kadash K, Kozlowski BE, Biega LA, Duceman BW. Validation study of the TrueAllele automated data review system. J Forensic Sci 2004 49 : 660 7.
22. Gill P. Application of low copy number DNA profiling. Croat Med J 2001 42 : 229 32.
23. Bing DH, Bieber FR, Holland MM, Huffine EF. Isolation of DNA from forensic evidence. Current Protocols in Human Genetics. Suppl. 26:14.3.1-3.39. New York : John Wiley, 2000.
24. Lincoln PJ, Thomson J, editors. DNA profiling protocols, methods in molecular biology, Vol. 98. New Jersey : Humana Press, 1998.
25. Brettell TA, Butler JM, Saferstein R. Forensic science. Anal Chem 2005 77 : 3839 60.
26. Budowle B, Smith J, Moretti T, DiZinno J. DNA typing protocols: molecular biology and forensic analysis. Natik : Eaton Publishing, 2000 : 41 2.
27. ® M48. J Forensic Sci 2006 51 : 1055 61.
28. ® Y human male DNA quantification kit user's manual. Foster City, CA : Applied Biosystems, 2003 Part # 43 44790 Rev. B.
29. ® Identifiler™ PCR amplification kit user's manual. Foster City, CA : Applied Biosystems, 2001 Part # 4323291 Rev. B.
30. ® 3100 genetic analyzer user guide. Foster City, CA : Applied Biosystems, 2003 Part # 4347102 Rev. A.
31. ® ID-X Software Version 1.0 Getting Started Guide 2007. Part #: 4375574 Rev. A; and Reference Guide. 2007. Part #: 4375671 Rev. A. Foster City, CA : Applied Biosystems, 2007.
32. Gill P, Jeffreys AJ, Werrett DJ. Forensic applications of DNA "fingerprints." Nature 1985 318 : 577 9.
33. Scientific Working Group on DNA Analysis Methods (SWGDAM). Revised validation guidelines issued by the Scientific Working Group on DNA Analysis Methods (SWGDAM). Forensic Sci Commun 2004 6 (3) available at http://www.fbi.gov/hq/lab/fsc/backissu/july2004/standards/2004-03-standards02. htm#perfcheck.