Divergence in zygodontomys (Rodentia: Sigmodontinae) and distribution of Amazonian Savannas

Journal of Heredity

Volumn 100, Issue 3, 2009, Pages 322-328

  Bonvicino, Cibele R ^a,b   Gonalves, Pablo R ^a,c   De Oliveira, João A ^c   De Oliveira, Luiz Flamarion B ^c   Mattevi, Margarete S ^d  

^a INSTITUTO NACIONAL DE CÂNCER   (Brazil)

^b INSTITUTO OSWALDO CRUZ   (Brazil)

^c FEDERAL UNIVERSITY OF RIO DE JANEIRO   (Brazil)

^d UNIVERSIDADE LUTERANA DO BRASIL   (Brazil)

Author keywords

Amazonian savanna; Phylogeography; Zygodontomys

Indexed keywords

MITOCHONDRIAL DNA;

ARTICLE; CLADISTICS; DNA FRAGMENTATION; DNA SEQUENCE; FEMALE; FRENCH GUIANA; GENE MAPPING; GENETIC LINKAGE; KARYOTYPE; MALE; MORPHOTYPE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PHYLOGEOGRAPHY; PRIORITY JOURNAL; RODENT; SAVANNA; SIGMODONTINAE; SOUTH AMERICA; SPECIES DIFFERENTIATION; SPECIES DISTRIBUTION; SPECIES DIVERSITY; SPECIES HABITAT; UPPER PLEISTOCENE; VEGETATION; VICARIANCE;

ANIMALS; DNA, MITOCHONDRIAL; EVOLUTION, MOLECULAR; FEMALE; GENETIC VARIATION; GEOGRAPHY; MALE; PHYLOGENY; SEX CHROMOSOMES; SIGMODONTINAE; SOUTH AMERICA;

CRICETIDAE; RODENTIA; SIGMODONTINAE; VERTEBRATA; ZYGODONTOMYS; ZYGODONTOMYS BREVICAUDA;

EID: 65349120173     PISSN: 00221503     EISSN: 14657333     Source Type: Journal    
DOI: 10.1093/jhered/esn105     Document Type: Article

References (39)

1. Anhuf D, Ledru M-P, Behling H, da Cruz F Jr, Cordeiro RC, Van der Hammen T, Karmann I, Marengo JA, de Oliveira PE, Pessenda L, et al. 2006. Paleo-environmental change in Amazonian and African rainforest during the LGM. Palaeogeogr Palaeoclimatol Palaeoecol. 239:510-527.
2. Bates J. 2001. Avian diversification in Amazonia: evidence for historical complexity and a vicariance model for a basin diversification pattern. In: Vieira IC, Silva JMC, Oren DC, DIncao MA, editors. Diversidade Biologica e Cultural da Amazônia. Belém (Brazil): Museu Paraense Emilio Goeldi. p. 119-139.
3. Beerli P. 1997-2004. MIGRATE:documentation and program, part of LAMARC. Version 2.0. Revised December 23, 2004 [Internet]. Florida State University. Available from: http://evolution.gs.washington.edu/lamarc.html. Accessed Jan 2008.
4. Beerli P, Felsenstein J. 1999. Maximum-likelihood estimation of migration rates and effective population numbers in two populations using a coalescent approach. Genetics 152:763-773.
5. Bennet KD. 1990. Milankovitch cycles and their effects on species in ecological and evolutionary time. Paleobiology 16:11-21.
6. Bonvicino CR, Maroja LS, de Oliveira JA, Coura JR. 2003. Karyology and morphology of Zygodontomys (Rodentia, Sigmodontinae) from the Brazilian Amazon, with a molecular appraisal of the phylogenetic relationships of the genus. Mammalia 67:119-132.
7. Brazil. 1975. Projeto RADAMBRASIL Folha NA. 20 Boa Vista e parte das Folhas NA.21 Tumucumaque, NB.20 Roraima eNB21; geologia, geo-morfologia, pedologia, vegetaçxão e uso potencial daterra. Rio de Janeiro (Brazil): Departamento Nacional de Produçxão Mineral.
8. Bush MB, de Oliveira PE, Colinvaux PA, Miller MC, Moreno JE. 2004. Amazonian paleoecological histories: one hill, three watersheds. Palaeogeogr Palaeoclimatol Palaeoecol. 214:359-393.
9. Colinvaux PA, Oliveira PE, Moreno JE, Miller MC, Bush MB. 1996. A long pollen record from lowland Amazonia: forest and cooling in glacial times. Science 274(5284): 85-88.
10. Excoffier L, Laval G, Schneider S. 2005. Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evol Bioinform Online. 1:47-50.
11. Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39(4):783-791.
12. Flenley JR. 1998. Tropical forests under the climates of the last 30,000 years. Clim Change 39:177-197.
13. Gardner AL, Patton JL. 1976. Karyotypic variation in oryzomyine rodents (Cricetidae) with comments on chromosomal evolution in the Neotropical cricetinae complex. Occas Pap Lousiana State Univ Mus Zool. 49:1-48.
14. Haffer J. 1969. Speciation in Amazonian forest birds. Science 165:131-137.
15. Haffer J. 2002. A rare hybrid manakin (Aves, Pipridae) and the origin of vertebrate species in Amazonia. Rudolstadter naturhistorische Schr. 4(Suppl):47-73.
16. Hey J, Nielsen R. 2004. Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics 167:747-760.
17. Hey J, Nielsen R. 2007. Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics. Proc Natl Acad Sci USA. 104:2785-2790.
18. Irwin DM, Kocher TD, Wilson AC. 1991. Evolution of the cytochrome b gene of mammals. J Mol Evol. 32:128-144.
19. Kimura M. 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J Mol Evol. 16:111-120.
20. Mattevi MS, Haag T, Nunes AP, Cordeiro JLP, Andrades-Miranda J, de Oliveira LF. 2002. Karyotypes of Brazilian representatives of genus Zygodontomys (Rodentia, Sigmodontinae). J Neotrop Mammal 9:5-10.
21. Olson DM, Dinerstein E, Wikramanayake ED, Burgess ND, Powell GVN, Underwood EC, D'amico JA, Itoua I, Strand HE, Morrison JC, et al. 2001. Terrestrial Ecoregions of the World: a New Map of Life on Earth. Bioscience 51:933-938.
22. Patton JL, Silva MN, Malcolm JR. 2000. Mammals of the Rio Jurua and the evolutionary and ecological diversification of Amazonia. Bull Am Mus Nat Hist. 244:1-306.
23. Perez-Zapata A, Aguilera M, Ferrer A, Reig OA. 1984. El cariotipo de una población de Zygodontomys sp. (Rodentia, Cricetidae) del Delta del Orinoco. Acta Cient Venez. 35(Suppl 1):227.
24. Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioin formatics 14(9):817-818.
25. Reig OA, Aguilera M, Perez-Zapata A. 1990. Cytogenetics and karyosys-tematics of South American oryzomyine rodents (Cricetidae: Sigmodontinae). II. High numbered karyotypes and chromosomal heterogeneity in Venezuelan Zygodontomys. Z Saugetierkd. 55:361-370.
26. Rosseti DF, de Toledo PM, Goés AM. 2005. New geological framework for Western Amazonia (Brazil) and implications for biogeography and evolution. Quat Res. 63:78-89.
27. Sambrook J, Fritsch EF, Maniatis T. 1989. Molecular cloning: a laboratory manual. 2nd ed. Cold Spring Harbor (NY): Cold Spring Harbor Laboratory Press.
28. Shimodaira H, Hasegawa M. 1999. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol Biol Evol. 16: 1114-1116.
29. Smith MF, Patton JL. 1993. The diversification of South American murid rodents: evidence from mitochondrial DNA sequence data for the Akodontine tribe. Biol J Linn Soc. 50:149-177.
30. Steppan SJ. 1995. Revision of the tribe Phyllotini (Rodentia: Sigmodontinae) with a phylogenetic hypothesis for the Sigmodontinae. Field Zool. 80:1-112.
31. Steppan SJ, Adkins R, Anderson J. 2004. Phylogeny and divergence-date estimates of rapid radiations in muroid rodents based on multiple nuclear genes. Syst Biol. 53(4):533-553.
32. *and other methods), 4.0 b10. Sunderland (MA): Sinauer Associates.
33. Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol. 24:1596-1599.
34. Technelysium Pty Ltd. 2006. Chromas Prosoftware, version 1.34 [Internet]. Queensland (Australia). Available from: http://www.technelysium.com.au/ ChromasPro.html.
35. Tranier M. 1976. Nouvelles données sur l'évolution non parallèle du karyotype et de la morphologie chez les phyllotinés (Roungeurs, Cricétidés). C R Acad Sci Paris D. 283:1201-1203.
36. Vanzolini PE, Williams EE. 1970. South American anoles: the geographic differentiation and evolution of the Anolis chrysolepis species group (Sauria, Iguanidae). Arq Zool São Paulo. 19:1-298.
37. Voss RS. 1991. An introduction to the Neotropical muroid rodent genus Zygodontomys. Bull Am Mus Nat Hist. 210:1-113.
38. Voss RS, Carleton MD. 1993. A new genus for Hesperomys molitor Winge and Holochilus magnus Hershkovitz (Mammalia, Muridae) with an analysis of its phylogenetic relationships. Am Mus Novit. 3085:1-39.
39. Zwickl DJ. 2006. GARLI manual (version 0.95). [Internet]. University of Texas. Austin (TX) Available from: URL http://www.bio.utexas.edu/faculty/ antisense/garli/GARLI.html. Accessed 22 Jan 2008.