Signatures of a shadow biosphere

Astrobiology

Volumn 9, Issue 2, 2009, Pages 241-249

  Davies, Paul C W ^a   Benner, Steven A ^b   Cleland, Carol E ^c   Lineweaver, Charles H ^d   McKay, Christopher P ^e   Wolfe Simon, Felisa ^f  

^a ARIZONA STATE UNIVERSITY   (United States)

^b FOUNDATION FOR APPLIED MOLECULAR EVOLUTION   (United States)

^c UNIVERSITY OF COLORADO   (United States)

^d AUSTRALIAN NATIONAL UNIVERSITY   (Australia)

^e NASA AMES RESEARCH CENTER   (United States)

^f HARVARD UNIVERSITY   (United States)

Author keywords

Alternative; Biogenesis; Biomarkers; Extremophiles; Multiple origins of life; Weird life

Indexed keywords

BIOLOGICAL MARKER;

ARTICLE; ASTRONOMY; BIOGENESIS; BIOLOGY; CHEMISTRY; ENVIRONMENTAL ASPECTS AND RELATED PHENOMENA; LIFE; METABOLISM; MOLECULAR EVOLUTION; THEORETICAL MODEL;

BIOGENESIS; BIOLOGICAL MARKERS; EARTH (PLANET); ECOLOGICAL AND ENVIRONMENTAL PHENOMENA; EVOLUTION, MOLECULAR; EXOBIOLOGY; LIFE; MODELS, THEORETICAL;

EID: 65249190692     PISSN: 15311074     EISSN: None     Source Type: Journal    
DOI: 10.1089/ast.2008.0251     Document Type: Article

References (48)

1. Amann, R., Ludwig, W., and Schleifer, K. (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:143-169.
2. Baker, J.B., Tyson, G.W., Webb, R.I., Flanagan, J., Hugenholtz, P., Allen, E.E., and Banfield, J. F. (2006) Lineages of acidophilic Archaea revealed by community genomic analysis. Science 314:1933-1935.
3. Baross, J. (2007) The Limits of Organic Life in Planetary Systems, edited by J.A. Baross National Academies Press, Washington, DC.
4. Benner, S.A. (1999) How small can a microorganism be? In Size Limits of Very Small Microorganisms: Proceedings of a Workshop, Steering Group on Astrobiology of the Space Studies Board, National Research Council, Washington, DC, pp 126-135.
5. Benner, S.A. (2004) Understanding nucleic acids using synthetic chemistry. Acc. Chem. Res. 37:784-797.
6. Benner, S.A. and Sismour, A.M. (2005) Synthetic biology. Nat. Rev. Genet. 6:533-543.
7. Benner, S.A. and Switzer, C.Y. (1999) Chance and necessity in biomolecular chemistry. Is life as we know it universal? In Simplicity and Complexity in Proteins and Nucleic Acids, edited by H. Frauenfelder, J. Deisenhofer, and P.G. Wolynes, Dahlem Workshop Report, Dahlem University Press, Berlin, pp 335-359.
8. Benner, S.A., Ellington, A.D., and Tauer, A. (1989) Modern metabolism as a palimpsest of the RNA world. Proc. Natl. Acad. Sci. U.S.A. 86:7054-7058.
9. Breitbart, M. and Rohwer, F. (2005) Here a virus, there a virus, everywhere the same virus? Trends Microbiol. 13:278-284.
10. Canfield, D.E. (1998) A new model for Proterozoic ocean chemistry. Nature 396:450-453.
11. Chapelle, F.H., O'Neill, K., Bradley, P.M., Methe, B.A., Ciufo, S.A., Knobel, L.L., and Lovley, D.R. (2002) A hydrogen-based subsurface microbial community dominated by methanogens. Nature 415:312-315.
12. Cleland, C.E. (2007) Epistemological issues in the study of microbial life: alternative biospheres. Stud. Hist. Philos. Biol. Biomed. Sci. 38:847-861.
13. Cleland, C.E. and Copley, S.D. (2005) The possibility of alternative microbial life on Earth. Int. J. Astrobiology 4:165-173.
14. Darwin, C. (1871) Natural History and Geology, Appleton & Co., New York.
15. Davies, P.C.W. (1998) The Fifth Miracle, Simon & Schuster, New York.
16. Davies, P.C.W. and Lineweaver, C.H. (2005) Finding a second sample of life on Earth. Astrobiology 5:154-163.
17. Folk, R.L. (1993) SEM imaging of bacteria and nannobacteria in carbonate sediments and rocks. J. Sediment. Petrol. 63:990-999.
18. Geyer, C.R., Battersby, T.R., and Benner, S.A. (2003) Nucleobase pairing in expanded Watson-Crick like genetic information systems. The nucleobases. Structure 11:1485-1498.
19. Hugenholtz, P., Allen, E.E., and Banfield, J.F. (2006). Lineages of acidophilic Archaea revealed by community genomic analysis. Science 314:1933-1935.
20. Jorgensen, B.B. and Boetius, A. (2007) Feast and famine microbial life in the deep-sea bed. Nat. Rev. Microbiol. 5:770-781.
21. Kajander, E.O. and Çiftçioglu, N. (1998) Nanobacteria: an alternative mechanism for pathogenic intra- and extracellular calcification and stone formation. Proc. Natl. Acad. Sci. U.S.A. 95:8274-8279.
22. Klein, H.P., Lederberg, J., Rich, A., Horowitz, N.H., Oyama, V.I., and Levin, G.V. (1976) The Viking Mission search for life on Mars. Nature 262:24-27.
23. Kuhn, T. (1970) The Structure of Scientific Revolutions, University of Chicago Press, Chicago.
24. Kulp, T.R., Hoeft, S.E., Asao, M., Magigan, M.T., Hollibaugh, J.T., Fisher, J.C., Stolz, J.F., Culbertson, C.W., Miller, L.G., and Oremland, R.S. (2008) Arsenic(III) fuels anoxygenic photosynthesis in hot springs biofilms from Mono Lake, California. Science 321:967-970.
25. Lin, L.-H., Hall, J., Lippmann-Pipke, J., Ward, J.A., Sherwood Lollar, B., DeFlaun, M., Rothmel, R., Moser, D., Gihring, T.M., Mislowack, B., and Onstott, T.C. (2005) Radiolytic H2 in continental crust: nuclear power for deep subsurface microbial communities. Geochemistry, Geophysics, Geosystems 6:Q07003.
26. Lin, L.-H., Wang, P.-L., Rumble, D., Lippmann-Pipke, J., Boice, E., Pratt, L.M., Sherwood Lollar, B., Brodie, E.L., Hazen, T.C., Andersen, G.L., DeSantis, T.Z., Moser, D.P., Kershaw, D., and Onstott, T.C. (2006). Long-term sustainability of a high-energy, low-diversity crustal biome. Science 314:479-482.
27. Lineweaver, C.H. (2006) We have not detected extraterrestrial life, or have we? In Life as We Know It, Cellular Origins and Life in Extreme Habitats and Astrobiology, Vol. 10, edited by J. Seckbach, Springer, Dordrecht, pp 445-457.
28. Lipp, J.S., Morono, Y., Inagaki, F., and Hinrichs, K-U. (2008) Significant contribution of Archaea to extant biomass in marine subsurface sediments. Nature 454:991-994.
29. McKay, C.P. (2004) What is life and how do we search for it on other worlds? PLoS Biol. 2:1260-1263.
30. McKay, C.P., Friedmann, E.I., Wharton, R.A., and Davis, W.L. (1992) History of water on Mars: a biological perspective. Adv. Space Res. 12:231-238.
31. Mackenzie, A.S., Brassell, S.C., Eglinton, G., and Maxwell, J.R., (1982) Chemical fossils: the geological fate of steroids. Science 217:491-504.
32. Margulis, L. (1998) Five Kingdoms. An Illustrated Guide to the Phyla of Life on Earth, Freeman, New York.
33. Moore, P.B. and Steitz, T.A. (2002) The involvement of RNA in ribosome function. Nature 418:229-235.
34. Navarro-Gonzalez, R., Rainey, F.A., Molina, P., Bagaley, D.R., Hollen, B.J., de la Rosa, J., Small, A.M., Quinn, R.C., Grunthaner, F.J., Ceceres, L., Gomez-Silva, B., and McKay, C.P. (2003) Mars-like soils in the Atacama Desert, Chile and the dry limit of microbial life. Science 302:1018-1021.
35. Oremland, R.S., Newman, D.K., Kail, B.W., and Stolz, J.F. (2002). Bacterial respiration of arsenate and its significance in the environment. In Environmental Chemistry of Arsenic, edited by W.T. Frankenberger, Dekker, New York, pp 273-296.
36. Pace, N.R. (1997). A molecular view of microbial diversity and the biosphere. Science 274:734-740.
37. Patel, A. (2005) The triplet code had a doublet predecessor. J. Theor. Biol. 233:527-532.
38. Perry, R.S., Lynne, B.Y., Sephton, M.A., Kolb, V.M., Perry, C.C., and Staley, J.T. (2006) Baking black opal in the desert sun: the importance of silica in desert varnish. Geology 34:537-540.
39. Ricardo, A., Carrigan, M.A., Olcott, A.N., and Benner, S.A. (2004) Borate minerals stabilize ribose. Science 303:196.
40. Roussel, E.G., Bonavita, M-A.C., Querellou, J., Cragg, B.A., Webster, G., Prieur, D., and Parkes, R.J. (2008) Extending the subsea- floor biosphere. Science 320:1046.
41. Schulze-Makuch, D. and Irwin, L.N. (2004) Life in the Universe: Expectations and Constraints, Springer, Berlin.
42. Siegel, J.S. (1998) Homochiral imperative of molecular evolution. Chirality 10:24-27.
43. Sogin, M.L., Morrison, H.G., Huber, J.A., Welch, D.M., Huse, S.M., Neal, P.R., Arrieta, J.M., and Herndl, G.J. (2006). Microbial diversity in the deep sea and the underexplored "rare biosphere." Proc. Natl. Acad. Sci. U.S.A. 103:12115-12120.
44. Stevens, T.O. and McKinley, J.P. (1995) Lithoautotrophic microbial ecosystems in deep basalt aquifers. Science 270:450-454.
45. Uwins, P.J.R., Webb, R.I., and Taylor, A.P. (1998) Novel nano-organisms from Australian sandstones. Am. Mineral. 83:1541-1550.
46. Venter, J.C., Remington, K., Heidelberg, J.F., Halpern, A.L., Rusch, D., Eisen, J.A., Wu, D., Paulsen, I., Nelson, K.E., Nelson, W., Fouts, D.E., Levy, S., Knap, A.H., Lomas, M.W., Nealson, K., White, O., Peterson, J., Hoffman, J., Parsons, R., Baden- Tillson, H., Pfannkoch, C., Rogers, Y.-H., and Smith, H.O. (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304:66-74.
47. Wolfe-Simon, F., Davies, P.C.W., and Anbar, A.D. (2009) Did nature also choose arsenic? Int. J. Astrobiology, doi: 10.1017/ S1473550408004394, published online 30 Jan 2009.
48. Wolstencroft, R.D. and Raven, J.A. (2002) Photosynthesis: likelihood of occurrence and possibility of detection on Earth-like planets. Icarus 157:535-548.