Comparative proteomic analysis of botrytis cinerea secretome

Journal of Proteome Research

Volumn 8, Issue 3, 2009, Pages 1123-1130

  Shah, Punit ^a   Atwood, James A ^a   Orlando, Ron ^a   Mubarek, Hind El ^b   Podila, Gopi K ^b   Davis, Maria R ^b  

^a UNIVERSITY OF GEORGIA   (United States)

^b UNIVERSITY OF ALABAMA IN HUNTSVILLE   (United States)

Author keywords

B. Cinerea; Ceratoplatanin; Mass spectrometry; Proteins; Secreted

Indexed keywords

CARRIER PROTEIN; FUNGAL PROTEIN; PEPTIDASE;

ARABIDOPSIS; ARTICLE; BOTRYTIS CINEREA; CARBOHYDRATE METABOLISM; CONTROLLED STUDY; FUNGUS GROWTH; LIQUID CHROMATOGRAPHY; NONHUMAN; OXIDATION REDUCTION REACTION; PATHOGENICITY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FUNCTION; PROTEIN MOTIF; PROTEIN SECRETION; PROTEOMICS; TANDEM MASS SPECTROMETRY;

ARABIDOPSIS; BOTRYTIS; CHROMATOGRAPHY, LIQUID; FRAGARIA; FUNGAL PROTEINS; LYCOPERSICON ESCULENTUM; PLANT DISEASES; PLANT LEAVES; PROTEOME; TANDEM MASS SPECTROMETRY;

ARABIDOPSIS; BOTRYOTINIA FUCKELIANA; FRAGARIA X ANANASSA; FUNGI; LYCOPERSICON ESCULENTUM;

EID: 65249115871     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr8003002     Document Type: Article

References (38)

1. Elad, Y. Botrytis: Biology, Pathology and Control; Kluwer Academic Publishers: Dordrecht, London, 2004.
2. Fernández-Acero, F. J.; Jorge, I.; Calvo, E.; Vallejo, I.; Carbú, M.; Camafeita, E.; Garrido, C.; López, J. A.; Jorrin, J.; Cantoral, J. M. Proteomic analysis of phytopathogenic fungus Botrytis cinerea as a potential tool for identifying pathogenicity factors, therapeutic targets and for basic research. Arch. Microbiol. 2007, 187 (3), 207 215.
3. ten Have, A.; Dekkers, E.; Kay, J.; Phylip, L. H.; van Kan, J. A. L. An aspartic proteinase gene family in the filamentous fungus Botrytis cinerea contains members with novel features. Microbiology 2004, 150, 2475-2489.
4. Valette-Collet, O.; Cimerman, A.; Reignault, P.; Levis, C.; Boccara, M. Disruption of Botrytis cinerea pectin methylesterase gene bcpme 1 reduces virulence on several host plants. Mol. Plant Microbe Interact. 2003, 16 (4), 360-367.
5. Wubben, J. P.; Mulder, W.; ten Have, A.; van Kan, J. A. L.; Visser, J. Cloning and Partial Characterization of Endopolygalacturonase Genes from Botrytis cinerea. Appl. Environ. Microbiol. 1999, 65 (4), 1596-1602.
6. ten Have, A.; Mulder, W.; Visser, J.; van Kan, J. A. L. The endopolygalacturonase gene Bcpgl is required for full virulence of Botrytis cinerea. Mol. Plant-Microbe Interact. 1998, 11, 1009 1016.
7. Kars, I.; Krooshof, G. H.; Wagemakers, L.; Joosten, R.; Benen, J. A. E.; van Kan, J. A. L. Necrotizing activity of five Botrytis cinerea endopolygalacturonases produced in Pichia pastoris. Plant J. 2005, 43 (2), 213-225.
8. Oda, K.; Kakizono, D.; Yamada, O.; Iefuji, H.; Akita, O.; Iwashita, K. Proteomic analysis of extracellular proteins from Aspergillus oryzae grown under submerged and solid-state culture conditions. Appl. Environ. Microbiol. 2006, 72 (5), 3448-3457.
9. Kim, Y.; Nandakumar, M. P.; Marten, M. R. Proteomics of filamentous fungi. Trends Biotechnol. 2007, 25 (9), 395 00.
10. Paper, J. M.; Scott-Craig, J. S.; Adhikari, N. D.; Cuomo, C. A.; Walton, J. D. Comparative proteomics of extracellular proteins in vitro and in planta from the pathogenic fungus Fusarium graminearum. Proteomics 2007, 7 (17), 3171-3183.
11. Medina, M. L.; Haynes, P. A.; Breci, L.; Francisco, W. A. Analysis of secreted proteins from Aspergillus flavus. Proteomics 2005, 5 (12), 3153-3161.
12. Zorn, H.; Peters, T.; Nimtz, M.; Berger, R. G. The secretome of Pleurotus sapidus. Proteomics 2005, 5 (18), 4832-4838.
13. Wymelenberg, A. V.; Sabat, G.; Martinez, D.; Rajangam, A. S.; Teeri, T. T.; Gaskell, J.; Kersten, P. J.; Cullen, D. The Phanerochaete chrysosporium secretome: Database predictions and initial mass spectrometry peptide identifications in cellulose-grown medium. J. Biotechnol. 2005, 118 (1), 17-34.
14. Viniegra-Gonzalez, G.; Favela-Torres, E.; Aguilar, C. N.; Romero Gomez, S. J.; Di'az-Godi'nez, G.; Augur, C. Advantages of fungal enzyme production in solid state over liquid fermentation systems. Biochem. Eng. J. 2003, 13 (2-3), 157-167.
15. Ferrari, S.; Plotnikova, J. M.; De Lorenzo, G.; Ausubel, F. M. Arabidopsis local resistance to Botrytis cinerea involves salicylic acid and camalexin and requires EDS4 and PAD2, but not SID2, EDS5 or PAD4. Plant J. 2003, 35 (2), 193-205.
16. Thomma, B.; Eggermont, K.; Tierens, K.; Broekaert, W. F. Requirement of functional ethylene-insensitive 2 gene for efficient resistance of Arabidopsis to infection by Botrytis cinerea. Plant Physiol. 1999, 121 (4), 1093-1101.
17. Govrin, E. M.; Levine, A. Infection of Arabidopsis with a ne crotrophic pathogen, Botrytis cinerea, elicits various defense responses but does not induce systemic acquired resistance (SAR). Plant Mol. Biol. 2002, 48 (3), 267-276.
18. Blum, H.; Beier, H.; Gross, H. J. Improved silver staining of plant proteins, RNA and DNA in polyacrylamide gels. Electrophoresis 1987, 8 (2), 93-99.
19. Pedrioli, P. G. A.; Eng, J. K.; Hubley, R.; Vogelzang, M.; Deutsch, E. W.; Raught, B.; Pratt, B.; Nilsson, E.; Angeletti, R. H.; Apweiler, R.; Costello, C. E.; Hermjakob, H.; Huang, S.; Julian, R. K.; Kapp, E.; McComb, M. E.; Oliver, S. G.; Omenn, G.; Paton, N. W.; Simpson, R.; Smith, R.; Taylor, C. F.; Zhu, W.; Aebersold, R. A.; common open representation of mass spectrometry data and its application to proteomics research. Nat. Biotechnol. 2004, 22, 1459-1466.
20. Weatherly, D. B.; Atwood, J. A.; Minning, T. A.; Cavola, C.; Tarleton, R. L.; Orlando, R. A heuristic method for assigning a false-discovery rate for protein identifications from Mascot database search results. Mol. Cell. Proteomics 2005, 4 (6), 762-772.
21. Bendtsen, J. D.; Nielsen, H.; Heijne, G. v.; Brunak, S. Improved prediction of signal peptides: SignalP 3.0. J. Mol. Biol. 2004, 340 (4), 783-795.
22. Bendtsen, J. D.; Jensen, L. J.; Blom, N.; von Heijne, G.; Brunak, S. Feature-based prediction of non-classical and leaderless protein secretion. Protein Eng., Des. Sel. 2004, 17 (4), 349-356.
23. Yajima, W.; Kav, N. N. The proteome of the phytopathogenic fungus Sclerotinia sclerotiorum. Proteomics 2006, 6 (22), 5995 6007.
24. Nombela, C.; Gil, C.; Chaffin, W. L. Non-conventional protein secretion in yeast. Trends Microbiol. 2006, 14 (1), 15-21.
25. Bendtsen, J. D.; Kiemer, L.; Fausboll, A.; Brunak, S. Non-classical protein secretion in bacteria. BMC Microbiol. 2005, 5 (1), 58.
26. 2-generating systems in Botrytis cinerea: the major Cu-Zn-superoxide dismutase(BCSOD 1) contributes to virulence on French bean, whereas a glucose oxidase(BCGOD 1) is dispensable. Mol. Plant Pathol. 2004, 5 (1), 17-27.
27. Ciechanover, A. Intracellular protein degradation: from a vague idea thru the lysosome and the ubiquitin-proteasome system and into human disease and drug targeting. Cell Death Differ. 2005, 12, 1178-1190.
28. Carvalho, P.; Goder, V.; Rapoport, T. Distinct ubiquitin-ligase complexes define convergent pathways for the degradation of ER proteins. Cell 2006, 126, 361-373.
29. Miclet, E.; Stoven, V.; Michels, P. A.; Opperdoes, F. R.; Lallem, J. Y.; Duffieux, F. NMR spectroscopic analysis of the first two steps of the pentose-phosphate pathway elucidates the role of 6-phospho gluconolactonase. J. Biol. Chem. 2001, 14, 34840-34846.
30. Clarke, J. L.; Scopes, D. A.; Sodeinde, O.; Mason, P. J. Glucose-6phosphate dehydrogenase-6-phosphogluconolactonase. A novel bifunctional enzyme in malaria parasites. Eur. J. Biochem. 2001, 268, 2013-2019.
31. Surolia, N.; Krishnamurthy, K.; Adiga, P. R. Enzymic basis of deranged foetal flavin-nucleotide metabolism consequent on immunoneutralization of maternal riboflavin carrier protein in the pregnant rat. Biochem. J. 1985, 230, 363-367.
32. Fernandez-Acero, F. J.; Jorge, I.; Calvo, E.; Vallejo, I.; Carbu, M.; Camafeita, E.; Lopez, J. A.; Cantoral, J. M.; Jorrin,J.Two- dimensional electrophoresis protein profile of the phytopathogenic fungus Botrytis cinerea. Proteomics 2006, 6, S88-S96.
33. Fernandez-Acero, F. J.; Jorge, I.; Calvo, E.; Vallejo, I.; Carbu, M.; Camafeita, E.; Garrido, C.; Lopez, J. A.; Jorrin, J.; Cantoral, J. M. Proteomic analysis of phytopathogenic fungus Botrytis cinerea as a potential tool for identifying pathogenicity factors, therapeutic targets and for basic research. Arch. Microbiol. 2007, 187, 207-215.
34. McGoldrick, S.; O'Sullivan, S. M.; Sheehan, D. Glutathione trans ferase-like proteins encoded in genomes of yeasts and fungi insights into evolution of a multifunctional protein superfamily. FEMS Microbiol. Lett 2005, 242, 1-12.
35. Pazzagli, L.; Cappugi, G.; Manao, G.; Camici, G.; Santini, A.; Scala, A. Purification, characterization, and amino acid sequence of cerato-platanin, a new phytotoxic protein from Ceratocystis fim-briata f. sp. platani. J. Biol. Chem. 1999, 274 (35), 24959-24964.
36. Chague, V.; Danit, L. V.; Siewers, V.; Gronover, C. S.; Tudzynski, P.; Tudzynski, B.; Sharon, A. Ethylene sensing and gene activation in Botrytis cinerea: a missing link in ethylene regulation of fungus-plant interactions. Mol. Plant-Microbe Interact. 2006, 19 (1), 33-42.
37. Jeong, J. S.; Mitchell, T. K.; Dean, R. A. The Magnaporthe grisea snodprot1 homolog, MSP1, is required for virulence. FEMS Mi crobiol. Lett. 2007, 273, 157-165.
38. Brito, N.; Espino, J. J.; Gonzalez, C. The endo-/!-1, 4-xylanase Xyn11A is required for virulence in Botrytis cinerea. Mol. Plant Microbe Interact. 2006, 19, 25-32.