Comparative profiles of gene expression in leaves and roots of maize seedlings under conditions of salt stress and the removal of salt stress

Plant and Cell Physiology

Volumn 50, Issue 4, 2009, Pages 889-903

  Qing, Dong Jin ^a   Lu, Hai Feng ^a   Li, Ning ^b   Dong, Hai Tao ^c   Dong, Deng Feng ^a   Li, You Zhi ^a  

^a GUANGXI UNIVERSITY   (China)

^b HONG KONG UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Hong Kong)

^c ZHEJIANG UNIVERSITY   (China)

Author keywords

Gene expression; Leaf; Maize; Removal of stress; Root; Salt stress

Indexed keywords

PLANT RNA; SODIUM CHLORIDE; WATER;

ADAPTATION; ARTICLE; DNA MICROARRAY; DRUG EFFECT; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; MAIZE; METABOLISM; PHYSIOLOGICAL STRESS; PLANT GENE; PLANT LEAF; PLANT ROOT; SEEDLING;

ADAPTATION, PHYSIOLOGICAL; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PLANT LEAVES; PLANT ROOTS; RNA, PLANT; SEEDLING; SODIUM CHLORIDE; STRESS, PHYSIOLOGICAL; WATER; ZEA MAYS;

ZEA MAYS;

EID: 65249089670     PISSN: 00320781     EISSN: 14719053     Source Type: Journal    
DOI: 10.1093/pcp/pcp038     Document Type: Article

References (61)

1. Adam, Z. (2000) Chloroplast proteases: possible regulators of gene expression? Biochimie 82: 647-654.
2. Andjelkovic, V. and Thompson, R. (2006) Changes in gene expression in maize kernel in response to water and salt stress. Plant Cell Rep. 25: 71-79.
3. Angelini, R., Federico, R. and Bonfante, P. (1995) Maize polyamine oxidase: antibody production and ultra-structure localization. J. Plant Physiol. 145: 686-692.
4. Baldi, P. and Long, A.D. (2001) A Bayesian framework for the analysis of microarray expression data: regularized t-test and statistical inferences of gene changes. Bioinformatics 17: 509-519.
5. Bray, E.A. (1993) Molecular responses to water deficit. Plant Physiol. 103: 1035-1040.
6. Bray, E.A. (2002) Classification of genes differentially expressed during water-defi cit stress in Arabidopsis thaliana: an analysis using microarray and differential expression data. Ann. Bot. 89: 803-811.
7. Bressan, R.A., Zhang, C., Zhang, H., Hasegawa, P.M., Bohnert, H.J. and Zhu, J.K. (2001) Learning from the Arabidopsis experience. The next gene search paradigm. Plant Physiol. 127: 1354-1360.
8. Buchanan, C.D., Lim, S., Salzman, R.A., Kagiampakis, I., Morishige, D.T., Weers, B.D., et al. (2005) Sorghum bicolor's transcriptome response to dehydration, high salinity and ABA. Plant Mol. Biol. 58: 699-720.
9. Camon, E., Barrell, D., Lee, V., Dimmer, E. and Apweiler, R. (2004) The Gene ontology annotation (GOA) database - an integrated resource of GO annotations to the UniProt Knowledgebase. In Silico Biol. 4: 5-6.
10. Capell,T.,Bassie,L.and Christou,P.(2004)Modulationofthe polyamine biosynthetic pathway in transgenic rice confers tolerance to drought stress. Proc. Natl Acad. Sci. USA. 101: 9909-9914.
11. Castle, A. and Castle, D. (2005) Ubiquitously expressed secretory carrier membrane proteins (SCAMPs) 1-4 mark different pathways and exhibit limited constitutive traffi cking to and from the cell surface. J. Cell Sci. 118: 3769-3780.
12. Cervelli, M., Tavladoraki, P., Diagostino, S., Angelini, R., Federico, R. and Mariottini, P. (2000) Isolation and characterization of three polyamine oxidase genes from Zea mays. Plant Physiol. Biochem. 38: 667-677.
13. Claudio, P.P., Tonini, T. and Giordano, A. (2002) The retinoblastoma family: twins or distant cousins? Genome Biol. 3: reviews3012.
14. Cole, C.N. and Scarcelli, J.J. (2006) Transport of messenger RNA from the nucleus to the cytoplasm. Curr. Opin. Cell Biol. 18: 299-306.
15. Cramer, G.R., Alberico, G.J. and Schmidt, C. (1994) Salt tolerance is not associated with the sodium accumulation of two maize hybrids. Aust. J. Plant Physiol. 21: 675-692.
16. Cramer, G.R. and Bowman, D.C. (1991a) Kinetics of maize leaf elongation. I. Increased yield threshold limits short-term, steady-state elongation rates after exposure to salinity. J. Exp. Bot. 4 2: 1417-1426.
17. Cramer, G.R. and Bowman, D.C. (1991b) Short-term leaf elongation kinetics of maize in response to salinity are independent of the root. Plant Physiol. 95: 965-967.
18. Cushman, J.C. and Bohnert, H.J. (2000) Genomic approaches to plant stress tolerance. Curr. Opin. Plant Biol. 3: 117-124.
19. Dal Degan, F., Rocher, A., Cameron-Mills, V. and von Wettstein, D. (1994) The expression of serine carboxypeptidases during maturation and germination of the barley grain. Proc. Natl Acad. Sci. USA 91: 8209-8213.
20. de Jager, S.M. and Murray, J.A. (1999) Retinoblastoma proteins in plants. Plant Mol. Biol. 41: 295-299.
21. Dong, Q., Roy, L., Freeling, M., Walbot, V. and Brendel, V. (2003) ZmDB, an integrated database for maize genome research. Nucleic Acids Res. 31: 244-247.
22. Flowers, T.J. (2004) Improving crop salt tolerance. J. Exp. Bot. 55: 307-319.
23. Gomez-Merino, F.C., Arana-Ceballos, F.A., Trejo-Tellez, L.I., Skirycz, A., Brearley, C.A., Dormann, P., et al. (2005) Arabidopsis AtDGK7, the smallest member of plant diacylglycerol kinases (DGKs), displays unique biochemical features and saturates at low substrate concentration: the DGK inhibitor R59022 differentially affects AtDGK2 and AtDGK7 activity in vitro and alters plant growth and development. J. Biol. Chem. 280: 34888-34899.
24. Gong, Q., Li, P., Ma, S., Indu Rupassara, S. and Bohnert, H.J. (2005) Salinity stress adaptation competence in the extremophile Thellungiella halophila in comparison with its relative Arabidopsis thaliana. Plant J. 44: 826-839.
25. Hara, K., Yagi, M., Koizumi, N., Kusano, T. and Sano, H. (2000) Screening of wound-responsive genes identifi es an immediate-early expressed gene encoding a highly charged protein in mechanically wounded tobacco plants. Plant Cell Physiol. 41: 684-691.
26. Harris, M.A., Clark, J., Ireland, A., Lomax, J., Ashburner, M., Foulger, R., et al. (2004) The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res. 32: D258-D261.
27. Hasegawa, P.M., Bressan, R.A., Zhu, J.K. and Bohnert, H.J. (2000) Plant cellular and molecular responses to high salinity. Annu. Rev. Plant Physiol. Plant Mol. Biol. 51: 463-499.
28. Hatfield, G.W., Hung, S.P. and Baldi, P. (2003) Differential analysis of DNA microarray gene expression data. Mol. Microbiol. 47: 871-877.
29. Hsiao, T.C. and Xu, L.K. (2000) Sensitivity of growth of roots versus leaves to water stress: biophysical analysis and relation to water transport. J. Exp. Bot. 51: 1595-1616.
30. Inan, G., Zhang, Q., Li, P. Wang, Z., Cao, Z., Zhang, H., et al. (2004) Salt cress. A halophyte and cryophyte Arabidopsis relative model system and its applicability to molecular genetic analyses of growth and development of extremophiles. Plant Physiol. 135: 1718-1737.
31. Jensen, R.A. and Ahmad, S. (1988) Evolution and phylogenetic distribution of the specialized isozymes of 3-deoxy- D-arabino-heptulosonate 7-phosphate synthase in superfamily-B prokaryotes. Microbiol. Sci. 5: 316-319.
32. Jones, C.G., Lycett, G.W. and Tucker, G.A. (1996) Protease inhibitor studies and cloning of a serine carboxypeptidase cDNA from germinating seeds of pea (Pisum sativum L.). Eur. J. Biochem. 235: 574-578.
33. Kawasaki, S., Borchert, C., Deyholos, M., Wang, H., Brazille, S., Kawai, K., et al. (2001) Gene expression profiles during the initial phase of salt stress in rice. Plant Cell 13: 889-905.
34. Laurenzi, M., Rea, G., Federico, R., Tavladoraki, P. and Angelini, R. (1999) De-etiolation causes a phytochrome-mediated increase of polyamine oxidase expression in outer tissues of the maize mesocotyl: a role in the photomodulation of growth and cell wall differentiation. Planta 208: 146-154.
35. Lim, P.O., Kim, H.J. and Nam, H.G. (2007) Leaf senescence. Annu. Rev. Plant Biol. 58: 115-136.
36. Madlung, A. and Comai, L. (2004) The effect of stress on genome regulation and structure. Ann. Bot. 94: 481-495.
37. Mansour, M.M.F. and Salama, K.H.A. (2004) Cellular basis of salinity tolerance in plants. Environ. Exp. Bot. 52: 113-122.
38. Marcelis, L.F.M. and Van Hooijdonk, J. (1999) Effect of salinity on growth, water use and nutrient use in radish (Raphanus sativus L.). Plant Soil 215: 57-64.
39. Mérida, I., Avila-Flores, A. and Merino, E. (2008) Diacylglycerol kinases: at the hub of cell signalling. Biochem. J. 409: 1-18.
40. Munns, R. (1993) Physiological processes limiting plant growth in saline soils: some dogmas and hypotheses. Plant Cell Environ. 16: 15-24.
41. Munns, R. (2002) Comparative physiology of salt and water stress. Plant Cell Environ. 25: 239-250.
42. Nelson, D.E., Shen, B. and Bohnert, H.J. (1998) Salinity tolerance - mechanisms, models and the metabolic engineering of complex traits. Genet. Eng. (NY) 20: 153-176.
43. Nibau, C., Wu, H.M. and Cheung, A.Y. (2006) RAC/ROP GTPases: 'hubs' for signal integration and diversifi cation in plants. Trends Plant Sci. 11: 309-315.
44. Parida, A.K. and Das, A.B. (2005) Salt tolerance and salinity effects on plants: a review. Ecotoxicol. Environ. Saf. 60: 324-349.
45. Perkin-Elmer Corp. (1982) Perkin-Elmer Manual. Analytical Methods for Atomic Absorption Spectrophotometry. Perkin-Elmer Corp.
46. Quartacci, M.F., Glisic, O., Stevanovic, B. and Navari-Izzo, F. (2002) Plasma membrane lipids in the resurrection plant Ramonda serbica following dehydration and rehydration. J. Exp. Bot. 53: 2159-2166.
47. Rodriguez, H.G., Roberts, J., Jordan, W.R. and Drew, M.C. (1997) Growth, water relations, and accumulation of organic and inorganic solutes in roots of maize seedlings during salt stress. Plant Physiol. 113: 881-893.
48. Suen, D.F., Wu, S.S., Chang, H.C., Dhugga, K.S. and Huang, A.H. (2003) Cell wall reactive proteins in the coat and wall of maize pollen: potential role in pollen tube growth on the stigma and through the style. J. Biol. Chem. 278: 43672-43681.
49. Thomma, B.P., Cammue, B.P. and Thevissen, K. (2002) Plant defensins. Planta 216: 193-202.
50. Valdivia, E.R., Wu, Y., Li, L.C., Cosgrove, D.J. and Stephenson, A.G. (2007) A group-1 grass pollen allergen influences the outcome of pollen competition in maize. PLoS ONE 2: e154.
51. Van Gysel, A., Van Montagu, M. and Inze, D. (1993) A negatively lightregulated gene from Arabidopsis thaliana encodes a protein showing high similarity to blue copper-binding proteins. Gene 136: 79-85.
52. Wang, H., Miyazaki, S., Kawai, K., Deyholos, M., Galbraith, D.W. and Bohnert, H.J. (2003) Temporal progression of gene expression responses to salt shock in maize roots. Plant Mol. Biol. 52: 873-891.
53. Ward, J.M., Hirschi, K.D. and Sze, H. (2003) Plants pass the salt. Trends Plant Sci. 8: 200-201.
54. Weatherwax, S.C., Ong, M.S., Degenhardt, J., Bray, E.A. and Tobin, E.M. (1996 ) The interaction of light and abscisic acid in the regulation of plant gene expression. Plant Physiol. 111: 363-370.
55. Wolfinger, R.D., Gibson, G., Wolfinger, E.D., Bennett, L., Hamadeh, H., Bushel, P., et al. (2001) Assessing gene significance from cDNA microarray expression data via mixed models. J. Comput. Biol. 8: 625-637.
56. Wu, F.Z., Zhao, F.Y., and Liu, Y.Y. (2000) Analysis of the problems in continues cropping system of protective vegetable and the controlling ways. In Fertilizing for Sustainable Production of High Quality Vegetables. Edited by Li, X.L., Zhang, F.S., and Mi, G.H., pp. 157-163. China Agricultural University Publisher, Beijing (in Chinese with English abstract).
57. Zhang, W., Culley, D.E.,Nie,L.and Brockman, F.J.(2006) DNAmicroarray analysis of anaerobic Methanosarcina barkeri reveals responses to heat shock and air exposure. J. Ind. Microbiol. Biotechnol. 33: 784-790.
58. Zhu, C., Schraut, D., Hartung, W. and Schaffner, A.R. (2005) Differential responses of maize MIP genes to salt stress and ABA. J. Exp. Bot. 56: 2971-2981.
59. Zhu, J.K. (2000) Genetic analysis of plant salt tolerance using Arabidopsis. Plant Physiol. 124: 941-948.
60. Zhu, J.K. (2001) Plant salt tolerance. Trends Plant Sci. 6: 66-71.
61. Zhu, J.K. (2002) Salt and drought stress signal transduction in plants. Annu. Rev. Plant. Biol. 53: 247-273.