메뉴 건너뛰기




Volumn 35, Issue 2, 2009, Pages 197-207

An evolving model of undirected networks based on microscopic biological interaction systems

Author keywords

Biological undirected networks; Disassortativity; Nodes; Preferential duplication

Indexed keywords

ARTICLE; CALCULATION; CORRELATION COEFFICIENT; GENE DUPLICATION; MATHEMATICAL PARAMETERS; MICROSCOPY; PRIORITY JOURNAL; PROTEIN INTERACTION;

EID: 64749116508     PISSN: 00920606     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10867-009-9142-3     Document Type: Article
Times cited : (5)

References (33)
  • 1
    • 0142077573 scopus 로고    scopus 로고
    • Topology of evolving networks: Local events and universality
    • 10.1103/PhysRevLett.85.5234
    • R Albert A-L Barabási 2000 Topology of evolving networks: local events and universality Phys. Rev. Lett. 85 5234 10.1103/PhysRevLett.85.5234
    • (2000) Phys. Rev. Lett. , vol.85 , pp. 5234
    • Albert, R.1    Barabási, A.-L.2
  • 2
    • 0035895239 scopus 로고    scopus 로고
    • The structure of scientific collaboration networks
    • 10.1073/pnas.021544898
    • MEJ Newman 2001 The structure of scientific collaboration networks Proc. Natl. Acad. Sci. U. S. A. 98 404 409 10.1073/pnas.021544898
    • (2001) Proc. Natl. Acad. Sci. U. S. A. , vol.98 , pp. 404-409
    • Newman, M.E.J.1
  • 3
    • 0035395881 scopus 로고    scopus 로고
    • Who is the best connected scientist? A study of scientific coauthorship networks
    • 10.1103/PhysRevE.64.016131
    • MEJ Newman 2001 Who is the best connected scientist? A study of scientific coauthorship networks Phys. Rev. E 64 016131 10.1103/PhysRevE.64. 016131
    • (2001) Phys. Rev. e , vol.64 , pp. 016131
    • Newman, M.E.J.1
  • 4
    • 0033539175 scopus 로고    scopus 로고
    • Internet: Diameter of the world-wide web
    • 10.1038/43601
    • R Albert H Jeong A-L Barabási 1999 Internet: diameter of the world-wide web Nature 401 130 131 10.1038/43601
    • (1999) Nature , vol.401 , pp. 130-131
    • Albert, R.1    Jeong, H.2    Barabási, A.-L.3
  • 5
    • 0036353494 scopus 로고    scopus 로고
    • Small world patterns in food webs
    • 10.1006/jtbi.2001.2460
    • JM Montoya RV Solé 2002 Small world patterns in food webs J. Theor. Biol. 214 405 412 10.1006/jtbi.2001.2460
    • (2002) J. Theor. Biol. , vol.214 , pp. 405-412
    • Montoya, J.M.1    Solé, R.V.2
  • 6
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: Understanding the cell's functional organization
    • 10.1038/nrg1272
    • A-L Barabási ZN Oltvai 2004 Network biology: understanding the cell's functional organization Nat. Rev. Genet. 5 101 114 10.1038/nrg1272
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 101-114
    • Barabási, A.-L.1    Oltvai, Z.N.2
  • 7
    • 18744389789 scopus 로고    scopus 로고
    • Assortative mixing in networks
    • MEJ Newman 2002 Assortative mixing in networks Phys. Rev. Lett. 89 20 208701
    • (2002) Phys. Rev. Lett. , vol.89 , Issue.20 , pp. 208701
    • Newman, M.E.J.1
  • 8
    • 34249736324 scopus 로고    scopus 로고
    • Biological impacts and context of network theory
    • 10.1242/jeb.003731
    • E Almaas 2007 Biological impacts and context of network theory J. Exp. Biol. 210 1548 1558 10.1242/jeb.003731
    • (2007) J. Exp. Biol. , vol.210 , pp. 1548-1558
    • Almaas, E.1
  • 9
    • 0038483826 scopus 로고    scopus 로고
    • Emergence of scaling in random networks
    • 10.1126/science.286.5439.509
    • A-L Barabási R Albert 1999 Emergence of scaling in random networks Science 286 509 512 10.1126/science.286.5439.509
    • (1999) Science , vol.286 , pp. 509-512
    • Barabási, A.-L.1    Albert, R.2
  • 10
    • 0013173298 scopus 로고    scopus 로고
    • Modeling of protein interaction networks
    • 10.1159/000067642
    • A Vázquez A Flamminia A Maritana 2003 Modeling of protein interaction networks Complexus 1 38 10.1159/000067642
    • (2003) Complexus , vol.1 , pp. 38
    • Vázquez, A.1    Flamminia, A.2    Maritana, A.3
  • 12
    • 0037460091 scopus 로고    scopus 로고
    • Evolving protein interaction networks through gene duplication
    • 10.1016/S0022-5193(03)00028-6
    • P-S Romualdo E Smith RV Sole 2003 Evolving protein interaction networks through gene duplication J. Theor. Biol. 222 199 210 10.1016/S0022-5193(03) 00028-6
    • (2003) J. Theor. Biol. , vol.222 , pp. 199-210
    • Romualdo, P.-S.1    Smith, E.2    Sole, R.V.3
  • 13
    • 33750454058 scopus 로고    scopus 로고
    • Error and attack tolerance of evolving networks with local preferential attachment
    • 10.1016/j.physa.2006.05.049
    • S Sun Z Liu Z Chen Z Yuan 2007 Error and attack tolerance of evolving networks with local preferential attachment Physica A 373 851 860 10.1016/j.physa.2006.05.049
    • (2007) Physica A , vol.373 , pp. 851-860
    • Sun, S.1    Liu, Z.2    Chen, Z.3    Yuan, Z.4
  • 14
    • 34547125380 scopus 로고    scopus 로고
    • Modeling for evolving biological networks with scale-free connectivity, hierarchical modularity, and disassortativity
    • 10.1016/j.mbs.2006.11.002
    • K Takemoto C Oosawa 2007 Modeling for evolving biological networks with scale-free connectivity, hierarchical modularity, and disassortativity Math. Biosci. 208 454 468 10.1016/j.mbs.2006.11.002
    • (2007) Math. Biosci. , vol.208 , pp. 454-468
    • Takemoto, K.1    Oosawa, C.2
  • 15
    • 33244458927 scopus 로고    scopus 로고
    • Evolving networks by merging cliques
    • 10.1103/PhysRevE.72.046116
    • K Takemoto C Oosawa 2005 Evolving networks by merging cliques Phys. Rev. E 71 046116 10.1103/PhysRevE.72.046116
    • (2005) Phys. Rev. e , vol.71 , pp. 046116
    • Takemoto, K.1    Oosawa, C.2
  • 17
    • 0642285840 scopus 로고    scopus 로고
    • Preferential attachment in the protein network evolution
    • 10.1103/PhysRevLett.91.138701
    • E Eisenberg EY Levanon 2003 Preferential attachment in the protein network evolution Phys. Rev. Lett. 91 138701 10.1103/PhysRevLett.91.138701
    • (2003) Phys. Rev. Lett. , vol.91 , pp. 138701
    • Eisenberg, E.1    Levanon, E.Y.2
  • 18
    • 33644850066 scopus 로고    scopus 로고
    • Copying nodes versus editing links: The source of the difference between genetic regulatory networks and the WWW
    • Y Louzoun L Muchnik S Solomon 2006 Copying nodes versus editing links: the source of the difference between genetic regulatory networks and the WWW Syst. Biol. (Stevenage) 22 5 581 588
    • (2006) Syst. Biol. (Stevenage) , vol.22 , Issue.5 , pp. 581-588
    • Louzoun, Y.1    Muchnik, L.2    Solomon, S.3
  • 19
    • 0003258329 scopus 로고    scopus 로고
    • Power-law distribution of the world wide web
    • 10.1126/science.287.5461.2115a
    • LA Adamic BA Huberman 2000 Power-law distribution of the world wide web Science 287 2115 10.1126/science.287.5461.2115a
    • (2000) Science , vol.287 , pp. 2115
    • Adamic, L.A.1    Huberman, B.A.2
  • 20
    • 0038349948 scopus 로고    scopus 로고
    • Sequencing and comparison of yeast species to identify genes and regulatory elements
    • 10.1038/nature01644
    • M Kellis N Patterson M Endrizzi B Birren ES Lander 2003 Sequencing and comparison of yeast species to identify genes and regulatory elements Nature 423 241 254 10.1038/nature01644
    • (2003) Nature , vol.423 , pp. 241-254
    • Kellis, M.1    Patterson, N.2    Endrizzi, M.3    Birren, B.4    Lander, E.S.5
  • 21
    • 0030716471 scopus 로고    scopus 로고
    • Comparable rates of gene loss and functional divergence after genome duplications early in vertebrate evolution
    • JH Nadeau D Sankoff 1997 Comparable rates of gene loss and functional divergence after genome duplications early in vertebrate evolution Genetics 147 1259 1266
    • (1997) Genetics , vol.147 , pp. 1259-1266
    • Nadeau, J.H.1    Sankoff, D.2
  • 22
    • 84930064585 scopus 로고    scopus 로고
    • Hierarchical organization in complex networks
    • 10.1103/PhysRevE.67.026112
    • E Ravasz A-L Barabási 2003 Hierarchical organization in complex networks Phys. Rev. E 67 026112 10.1103/PhysRevE.67.026112
    • (2003) Phys. Rev. e , vol.67 , pp. 026112
    • Ravasz, E.1    Barabási, A.-L.2
  • 24
    • 0034721164 scopus 로고    scopus 로고
    • Error and attack: Tolerance of complex networks
    • 10.1038/35019019
    • R Albert H Jeong A-L Barabási 2000 Error and attack: tolerance of complex networks Nature 406 378 382 10.1038/35019019
    • (2000) Nature , vol.406 , pp. 378-382
    • Albert, R.1    Jeong, H.2    Barabási, A.-L.3
  • 25
    • 0035799707 scopus 로고    scopus 로고
    • Lethality and centrality in protein networks
    • 10.1038/35075138
    • H Jeong SP Mason A-L Barabási ZN Oltvai 2001 Lethality and centrality in protein networks Nature 411 41 42 10.1038/35075138
    • (2001) Nature , vol.411 , pp. 41-42
    • Jeong, H.1    Mason, S.P.2    Barabási, A.-L.3    Oltvai, Z.N.4
  • 26
    • 0037012880 scopus 로고    scopus 로고
    • Specificity and stability in topology of protein networks
    • 10.1126/science.1065103
    • S Maslov K Sneppen 2002 Specificity and stability in topology of protein networks Science 296 210 10.1126/science.1065103
    • (2002) Science , vol.296 , pp. 210
    • Maslov, S.1    Sneppen, K.2
  • 27
    • 25944437904 scopus 로고    scopus 로고
    • Dynamical and correlation properties of the internet
    • 10.1103/PhysRevLett.87.258701
    • R Pastor-Satorras A Vázquez A Vespignani 2001 Dynamical and correlation properties of the internet Phys. Rev. Lett. 87 258701 10.1103/PhysRevLett.87.258701
    • (2001) Phys. Rev. Lett. , vol.87 , pp. 258701
    • Pastor-Satorras, R.1    Vázquez, A.2    Vespignani, A.3
  • 28
    • 0038752085 scopus 로고    scopus 로고
    • Mixing patterns in networks
    • 10.1103/PhysRevE.67.026126
    • MEJ Newman 2003 Mixing patterns in networks Phys. Rev. E 67 26126 10.1103/PhysRevE.67.026126
    • (2003) Phys. Rev. e , vol.67 , pp. 26126
    • Newman, M.E.J.1
  • 30
    • 41349104655 scopus 로고    scopus 로고
    • Networking genetic regulation and neural computation: Directed network topology and its effect on the dynamics
    • 10.1103/PhysRevE.70.061908
    • A Grönlund 2004 Networking genetic regulation and neural computation: directed network topology and its effect on the dynamics Phys. Rev. E 70 061908 10.1103/PhysRevE.70.061908
    • (2004) Phys. Rev. e , vol.70 , pp. 061908
    • Grönlund, A.1
  • 31
    • 0034609791 scopus 로고    scopus 로고
    • The large-scale organization of metabolic networks
    • 10.1038/35036627
    • H Jeong B Tombor R Albert ZN Oltvai AL Barabási 2000 The large-scale organization of metabolic networks Nature 407 651 654 10.1038/35036627
    • (2000) Nature , vol.407 , pp. 651-654
    • Jeong, H.1    Tombor, B.2    Albert, R.3    Oltvai, Z.N.4    Barabási, A.L.5
  • 32
    • 33751106667 scopus 로고    scopus 로고
    • Synchronization in weighted scale-free networks with degree-degree correlation
    • 10.1016/j.physd.2006.09.030
    • F Sorrentino M di Bernardo GH Cuéllar S Boccaletti 2006 Synchronization in weighted scale-free networks with degree-degree correlation Physica D 224 123 129 10.1016/j.physd.2006.09.030
    • (2006) Physica D , vol.224 , pp. 123-129
    • Sorrentino, F.1    Di Bernardo, M.2    Cuéllar, G.H.3    Boccaletti, S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.