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Volumn 25, Issue 2, 2009, Pages 198-208

Stowaway MITEs in Hordeum (Poaceae): Evolutionary history, ancestral elements and classification

Author keywords

[No Author keywords available]

Indexed keywords

ANCESTRY; DATA SET; EVOLUTIONARY BIOLOGY; GENE EXPRESSION; GRASS; PHYLOGENETICS; PHYLOGENY;

EID: 64649090868     PISSN: 07483007     EISSN: 10960031     Source Type: Journal    
DOI: 10.1111/j.1096-0031.2008.00245.x     Document Type: Article
Times cited : (13)

References (54)
  • 1
    • 33846936303 scopus 로고    scopus 로고
    • Comparison of orthologous loci from small grass genomes Brachypodium and rice: Implications for wheat genomics and grass genome annotation
    • Bossolini, E., Wicker, T., Knobel, P.A., Keller, B., 2007. Comparison of orthologous loci from small grass genomes Brachypodium and rice: implications for wheat genomics and grass genome annotation. Plant J. 49, 704 717.
    • (2007) Plant J. , vol.49 , pp. 704-717
    • Bossolini, E.1    Wicker, T.2    Knobel, P.A.3    Keller, B.4
  • 2
    • 34247491578 scopus 로고    scopus 로고
    • Assembly of the Tc1 and mariner transposition initiation complexes depends on the origin of their transposase DNA binding domains
    • [Erratum appears in Genetica 130, 217].
    • Brillet, B., Bigot, Y., Augé-Gouillou, C., 2007. Assembly of the Tc1 and mariner transposition initiation complexes depends on the origin of their transposase DNA binding domains. Genetica 130, 105 120 [Erratum appears in Genetica 130, 217].
    • (2007) Genetica , vol.130 , pp. 105-120
    • Brillet, B.1    Bigot, Y.2    Augé-Gouillou, C.3
  • 3
    • 0036464010 scopus 로고    scopus 로고
    • A new, expressed multigene family containing a hot spot for insertion of retroelements is associated with polymorphic subtelomeric regions of Trypanosoma brucei
    • Bringaud, F., Biteau, N., Melville, S.E., Hez, S., El-Sayed, N.M., Leech, V., Berriman, M., Hall, N., Donelson, J.E., Baltz, T., 2002. A new, expressed multigene family containing a hot spot for insertion of retroelements is associated with polymorphic subtelomeric regions of Trypanosoma brucei. Eukaryot. Cell 1, 137 151.
    • (2002) Eukaryot. Cell , vol.1 , pp. 137-151
    • Bringaud, F.1    Biteau, N.2    Melville, S.E.3    Hez, S.4    El-Sayed, N.M.5    Leech, V.6    Berriman, M.7    Hall, N.8    Donelson, J.E.9    Baltz, T.10
  • 4
    • 0028450046 scopus 로고
    • Stowaway: A new family of inverted repeat elements associated with genes of both monocotyledonous and dicotyledonous plants
    • Bureau, T.E., Wessler, S.R., 1994. Stowaway: a new family of inverted repeat elements associated with genes of both monocotyledonous and dicotyledonous plants. Plant Cell 6, 907 916.
    • (1994) Plant Cell , vol.6 , pp. 907-916
    • Bureau, T.E.1    Wessler, S.R.2
  • 5
    • 0029743043 scopus 로고    scopus 로고
    • A computer-based systematic survey reveals the predominance of small inverted-repeat elements in wild-type rice genes
    • Bureau, T.E., Ronald, P.C., Wessler, S.R., 1996. A computer-based systematic survey reveals the predominance of small inverted-repeat elements in wild-type rice genes. Proc. Natl Acad. Sci. USA 93, 8524 8529.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 8524-8529
    • Bureau, T.E.1    Ronald, P.C.2    Wessler, S.R.3
  • 8
    • 0000998517 scopus 로고
    • Determining primitive character states for phylogenetic reconstruction
    • Crisci, J.V., Stuessy, T.F., 1980. Determining primitive character states for phylogenetic reconstruction. Syst. Bot. 5, 112 135.
    • (1980) Syst. Bot. , vol.5 , pp. 112-135
    • Crisci, J.V.1    Stuessy, T.F.2
  • 9
    • 36549081460 scopus 로고    scopus 로고
    • Give-and-take: Interactions between DNA transposons and their host plant genomes
    • Dooner, H.K., Weil, C.F., 2007. Give-and-take: interactions between DNA transposons and their host plant genomes. Curr. Opin. Genet. Dev. 17, 486 492.
    • (2007) Curr. Opin. Genet. Dev. , vol.17 , pp. 486-492
    • Dooner, H.K.1    Weil, C.F.2
  • 10
    • 0037039351 scopus 로고    scopus 로고
    • Mariner-like transposases are widespread and diverse in flowering plants
    • Feschotte, C., Wessler, S.R., 2002. Mariner-like transposases are widespread and diverse in flowering plants. Proc. Natl Acad. Sci. USA 99, 280 285.
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 280-285
    • Feschotte, C.1    Wessler, S.R.2
  • 11
    • 0036250001 scopus 로고    scopus 로고
    • Plant transposable elements: Where genetics meets genomics
    • Feschotte, C., Jiang, N., Wessler, S.R., 2002a. Plant transposable elements: where genetics meets genomics. Nat. Rev. Genet. 3, 329 341.
    • (2002) Nat. Rev. Genet. , vol.3 , pp. 329-341
    • Feschotte, C.1    Jiang, N.2    Wessler, S.R.3
  • 12
    • 85158058496 scopus 로고    scopus 로고
    • Miniature inverted-repeat transposable elements and their relationship to established DNA transposons
    • In. Craig, N.L. Craigie, R. Gellert, M. Lambovitz, A.M. Eds. American Society of Microbiology Press. Washington, DC. pp.
    • Feschotte, C., Zhang, X., Wessler, S.R., 2002b. Miniature inverted-repeat transposable elements and their relationship to established DNA transposons. In : Craig, N.L., Craigie, R., Gellert, M., Lambovitz, A.M. (Eds. Mobile DNA II. American Society of Microbiology Press, Washington, DC, pp. 1147 1158.
    • (2002) Mobile DNA II. , pp. 1147-1158
    • Feschotte, C.1    Zhang, X.2    Wessler, S.R.3
  • 13
    • 0037295458 scopus 로고    scopus 로고
    • Genome-wide analysis of mariner-like transposable elements in rice reveals complex relatioships with Stowaway miniature inverted repeat transposable elements (MITEs)
    • Feschotte, C., Swamy, L., Wessler, S.R., 2003. Genome-wide analysis of mariner-like transposable elements in rice reveals complex relatioships with Stowaway miniature inverted repeat transposable elements (MITEs). Genetics 165, 747 758.
    • (2003) Genetics , vol.165 , pp. 747-758
    • Feschotte, C.1    Swamy, L.2    Wessler, S.R.3
  • 14
    • 17844374614 scopus 로고    scopus 로고
    • DNA-binding specificity of rice mariner-like transposases and interactions with Stowaway MITEs
    • Feschotte, C., Osterlund, M.T., Peeler, R., Wessler, S.R., 2005. DNA-binding specificity of rice mariner-like transposases and interactions with Stowaway MITEs. Nucleic Acids Res. 33, 2153 2165.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 2153-2165
    • Feschotte, C.1    Osterlund, M.T.2    Peeler, R.3    Wessler, S.R.4
  • 15
    • 84959747425 scopus 로고
    • Towards defining the course of evolution: Minimum change for a specific tree topology
    • Fitch, W.M., 1971. Towards defining the course of evolution: minimum change for a specific tree topology. Syst. Zool. 20, 406 416.
    • (1971) Syst. Zool. , vol.20 , pp. 406-416
    • Fitch, W.M.1
  • 16
    • 0010693169 scopus 로고
    • Phylogenetic inference and methodology as applied to the vertebrate record
    • Hecht, M.K., 1976. Phylogenetic inference and methodology as applied to the vertebrate record. Evol. Biol. 9, 335 363.
    • (1976) Evol. Biol. , vol.9 , pp. 335-363
    • Hecht, M.K.1
  • 17
    • 0030662074 scopus 로고    scopus 로고
    • Molecular reconstruction of Sleeping Beauty, a Tc1-like transposon from fish, and its transposition in human cells
    • Ivics, Z., Hackett, P.B., Plasterk, R.H., Izsvák, Z., 1997. Molecular reconstruction of Sleeping Beauty, a Tc1-like transposon from fish, and its transposition in human cells. Cell 91, 501 510.
    • (1997) Cell , vol.91 , pp. 501-510
    • Ivics, Z.1    Hackett, P.B.2    Plasterk, R.H.3    Izsvák, Z.4
  • 19
    • 1542321148 scopus 로고    scopus 로고
    • Using rice to understand the origin and amplification of miniature inverted repeat transposable elements (MITEs)
    • Jiang, N., Feschotte, C., Zhang, X., Wessler, S.R., 2004. Using rice to understand the origin and amplification of miniature inverted repeat transposable elements (MITEs). Curr. Opin. Plant Biol. 7, 115 119.
    • (2004) Curr. Opin. Plant Biol. , vol.7 , pp. 115-119
    • Jiang, N.1    Feschotte, C.2    Zhang, X.3    Wessler, S.R.4
  • 20
    • 0030860886 scopus 로고    scopus 로고
    • Target choice determinants of the Tc1 transposon of Caenorhabditis elegans
    • Ketting, R.F., Fischer, S.E.J., Plasterk, R.H.A., 1997. Target choice determinants of the Tc1 transposon of Caenorhabditis elegans. Nucleic Acids Res. 25, 4041 4047.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4041-4047
    • Ketting, R.F.1    Fischer, S.E.J.2    Plasterk, R.H.A.3
  • 21
    • 0346003772 scopus 로고    scopus 로고
    • The plant MITE mPing is mobilized in anther culture
    • Kikuchi, K., Terauchi, K., Wada, M., Hirano, H.Y., 2003. The plant MITE mPing is mobilized in anther culture. Nature 421, 167 170.
    • (2003) Nature , vol.421 , pp. 167-170
    • Kikuchi, K.1    Terauchi, K.2    Wada, M.3    Hirano, H.Y.4
  • 22
    • 64649099976 scopus 로고    scopus 로고
    • Optimization and the effects of missing values
    • In. Kitching, I.J. Forey, P.L. Humphries, C.J. Williams, D.M. Eds. 2nd edn. The Theory and Practice of Parsimony Analysis. Oxford University Press. Oxford/New York/Tokyo. pp.
    • Kitching, I.J., Forey, P.L., Humphries, C.J., Williams, D.M., 1998. Optimization and the effects of missing values. In : Kitching, I.J., Forey, P.L., Humphries, C.J., Williams, D.M. (Eds Cladistics, 2nd edn. The Theory and Practice of Parsimony Analysis. Oxford University Press, Oxford/New York/Tokyo, pp. 70 91.
    • (1998) Cladistics , pp. 70-91
    • Kitching, I.J.1    Forey, P.L.2    Humphries, C.J.3    Williams, D.M.4
  • 23
    • 33751005863 scopus 로고    scopus 로고
    • The proteins encoded by the pogo-like Lemi1 element bind the TIRs and subterminal repeated motifs of the Arabidopsis Emigrant MITE: Consequences for the transposition mechanism of MITEs
    • Loot, C., Santiago, N., Sanz, A., Casacuberta, J.M., 2006. The proteins encoded by the pogo-like Lemi1 element bind the TIRs and subterminal repeated motifs of the Arabidopsis Emigrant MITE: consequences for the transposition mechanism of MITEs. Nucleic Acids Res. 34, 5238 5246.
    • (2006) Nucleic Acids Res. , vol.34 , pp. 5238-5246
    • Loot, C.1    Santiago, N.2    Sanz, A.3    Casacuberta, J.M.4
  • 24
    • 33644546661 scopus 로고    scopus 로고
    • Characterization of Stowaway MITEs in pea (Pisum sativum L.) and identification of their potential master elements
    • Macas, J., Koblížková, A., Neumann, P., 2005. Characterization of Stowaway MITEs in pea (Pisum sativum L.) and identification of their potential master elements. Genome 48, 831 839.
    • (2005) Genome , vol.48 , pp. 831-839
    • MacAs, J.1    Koblížková, A.2    Neumann, P.3
  • 25
    • 64649099497 scopus 로고    scopus 로고
    • Reconstructing character evolution using parsimony
    • In. Maddison, D.R. Maddison, W.P. Eds. Sinauer Associates. Sunderland, MA. pp.
    • Maddison, D.R., Maddison, W.P., 2000. Reconstructing character evolution using parsimony. In : Maddison, D.R., Maddison, W.P. (Eds MacClade ver. 4. Sinauer Associates, Sunderland, MA, pp. 66 109.
    • (2000) MacClade Ver. 4. , pp. 66-109
    • Maddison, D.R.1    Maddison, W.P.2
  • 26
    • 34447633744 scopus 로고    scopus 로고
    • Multiple homoplasious insertions and deletions of a Triticeae (Poaceae) DNA transposon: A phylogenetic perspective
    • Mason-Gamer, R.J., 2007. Multiple homoplasious insertions and deletions of a Triticeae (Poaceae) DNA transposon: a phylogenetic perspective. BMC Evol. Biol. 7, 92.
    • (2007) BMC Evol. Biol. , vol.7 , pp. 92
    • Mason-Gamer, R.J.1
  • 27
    • 34247874476 scopus 로고    scopus 로고
    • Polyphenol oxidase (PPO) in wheat and wild relatives: Molecular evidence for a multigene family
    • Massa, A.N., Beecher, B., Morris, C.F., 2007. Polyphenol oxidase (PPO) in wheat and wild relatives: molecular evidence for a multigene family. Theor. Appl. Genet. 114, 1239 1247.
    • (2007) Theor. Appl. Genet. , vol.114 , pp. 1239-1247
    • Massa, A.N.1    Beecher, B.2    Morris, C.F.3
  • 28
    • 33846464977 scopus 로고    scopus 로고
    • Mobilization and evolutionary history of miniature inverted-repeat transposable elements (MITEs) in Beta vulgaris L
    • Menzel, G., Dechyeva, D., Keller, H., Lange, C., Himmelbauer, H., 2006. Mobilization and evolutionary history of miniature inverted-repeat transposable elements (MITEs) in Beta vulgaris L. Chromosome Res. 14, 831 844.
    • (2006) Chromosome Res. , vol.14 , pp. 831-844
    • Menzel, G.1    Dechyeva, D.2    Keller, H.3    Lange, C.4    Himmelbauer, H.5
  • 29
    • 0344668818 scopus 로고    scopus 로고
    • The Frog Prince: A reconstructed transposon from Rana pipiens with high transpositional activity in vertebrate cells
    • Miskey, C., Izsvák, Z., Plasterk, R.H., Ivics, Z., 2003. The Frog Prince: a reconstructed transposon from Rana pipiens with high transpositional activity in vertebrate cells. Nucleic Acids Res. 31, 6873 6881.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 6873-6881
    • Miskey, C.1    Izsvák, Z.2    Plasterk, R.H.3    Ivics, Z.4
  • 31
    • 0003558470 scopus 로고    scopus 로고
    • Published by the author. Ithaca, New York.
    • Nixon, K.C., 2002. WinClada ver. 1.00.08. Published by the author, Ithaca, New York.
    • (2002) WinClada Ver. 1.00.08.
    • Nixon, K.C.1
  • 33
    • 33750030513 scopus 로고    scopus 로고
    • Characterizing the composition and evolution of homoeologous genomes in hexaploid wheat through BAC-end sequencing on chromosome 3B
    • Paux, E., Roger, D., Badaeva, E., Gay, G., Bernard, M., Sourdille, P., Feuillet, C., 2006. Characterizing the composition and evolution of homoeologous genomes in hexaploid wheat through BAC-end sequencing on chromosome 3B. Plant J. 48, 463 474.
    • (2006) Plant J. , vol.48 , pp. 463-474
    • Paux, E.1    Roger, D.2    Badaeva, E.3    Gay, G.4    Bernard, M.5    Sourdille, P.6    Feuillet, C.7
  • 34
    • 1842869298 scopus 로고    scopus 로고
    • Pokey, a new DNA transposons in Daphnia (Cladocera: Crustacea)
    • Penton, E.H., Sullender, B.W., Crease, T.J., 2002. Pokey, a new DNA transposons in Daphnia (Cladocera: Crustacea). J. Mol. Evol. 55, 664 673.
    • (2002) J. Mol. Evol. , vol.55 , pp. 664-673
    • Penton, E.H.1    Sullender, B.W.2    Crease, T.J.3
  • 35
    • 0033736102 scopus 로고    scopus 로고
    • Phylogenetic evidence for excision of Stowaway miniature inverted-repeat transposable elements in Triticeae (Poaceae)
    • Petersen, G., Seberg, O., 2000. Phylogenetic evidence for excision of Stowaway miniature inverted-repeat transposable elements in Triticeae (Poaceae). Mol. Biol. Evol. 17, 1589 1596.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1589-1596
    • Petersen, G.1    Seberg, O.2
  • 36
    • 0037570944 scopus 로고    scopus 로고
    • Phylogenetic analyses of the diploid species of Hordeum (Poaceae) and a revised classification of the genus
    • Petersen, G., Seberg, O., 2003. Phylogenetic analyses of the diploid species of Hordeum (Poaceae) and a revised classification of the genus. Syst. Bot. 28, 293 306.
    • (2003) Syst. Bot. , vol.28 , pp. 293-306
    • Petersen, G.1    Seberg, O.2
  • 37
    • 27144543515 scopus 로고    scopus 로고
    • Updating of transposable element annotations from large wheat genomic sequences reveals diverse activities and gene associations
    • Sabot, F., Guyot, R., Wicker, T., Chantret, N., Laubin, B., Chalhoub, B., Leroy, P., Sourdille, P., Bernard, P., 2005. Updating of transposable element annotations from large wheat genomic sequences reveals diverse activities and gene associations. Mol. Genet. Genomics 274, 119 130.
    • (2005) Mol. Genet. Genomics , vol.274 , pp. 119-130
    • Sabot, F.1    Guyot, R.2    Wicker, T.3    Chantret, N.4    Laubin, B.5    Chalhoub, B.6    Leroy, P.7    Sourdille, P.8    Bernard, P.9
  • 39
    • 0032706374 scopus 로고    scopus 로고
    • Integration specificity of the hobo element of Drosophila melanogaster is dependent on sequences flanking the integration site
    • Saville, K.J., Warren, W.D., Atkinson, P.W., O'Brochta, D.A., 1999. Integration specificity of the hobo element of Drosophila melanogaster is dependent on sequences flanking the integration site. Genetica 105, 133 147.
    • (1999) Genetica , vol.105 , pp. 133-147
    • Saville, K.J.1    Warren, W.D.2    Atkinson, P.W.3    O'Brochta, D.A.4
  • 41
    • 45849139847 scopus 로고    scopus 로고
    • Phylogeny of Triticeae (Poaceae) based on three organelle genes, two single-copy nuclear genes, and morphology
    • Seberg, O., Petersen, G., 2007. Phylogeny of Triticeae (Poaceae) based on three organelle genes, two single-copy nuclear genes, and morphology. Aliso 23, 361 371.
    • (2007) Aliso , vol.23 , pp. 361-371
    • Seberg, O.1    Petersen, G.2
  • 44
    • 0036008822 scopus 로고    scopus 로고
    • Phylogenetic analysis reveals Stowaway-like elements may represent a fourth family of the IS630-Tc1-mariner superfamily
    • Turcotte, K., Bureau, T., 2002. Phylogenetic analysis reveals Stowaway-like elements may represent a fourth family of the IS630-Tc1-mariner superfamily. Genome 45, 82 90.
    • (2002) Genome , vol.45 , pp. 82-90
    • Turcotte, K.1    Bureau, T.2
  • 45
    • 0030940267 scopus 로고    scopus 로고
    • Insertions of a novel class of transposable elements with a strong target site preference for the r locus of maize
    • Walker, E.L., Eggleston, W.B., Demopoulos, D., Kermicle, J., Dellaporta, S.L., 1997. Insertions of a novel class of transposable elements with a strong target site preference for the r locus of maize. Genetics 146, 681 693.
    • (1997) Genetics , vol.146 , pp. 681-693
    • Walker, E.L.1    Eggleston, W.B.2    Demopoulos, D.3    Kermicle, J.4    Dellaporta, S.L.5
  • 46
    • 33749951044 scopus 로고
    • The out-group comparison method of character analysis
    • Watrous, L.E., Wheeler, Q.D., 1981. The out-group comparison method of character analysis. Syst. Zool. 30, 1 11.
    • (1981) Syst. Zool. , vol.30 , pp. 1-11
    • Watrous, L.E.1    Wheeler, Q.D.2
  • 47
    • 41049088756 scopus 로고    scopus 로고
    • Eukaryotic transposable elements: Teaching old genomes new tricks
    • In. Caporale, L.H. Ed. Oxford University Press. Oxford, UK. pp.
    • Wessler, S.R., 2006. Eukaryotic transposable elements: teaching old genomes new tricks. In : Caporale, L.H. (Ed The Implicit Genome. Oxford University Press, Oxford, UK, pp. 138 165.
    • (2006) The Implicit Genome. , pp. 138-165
    • Wessler, S.R.1
  • 48
    • 0029583698 scopus 로고
    • LTR-retrotransposons and MITEs: Important players in the evolution of plant genomes
    • Wessler, S.R., Bureau, T.E., White, S.E., 1995. LTR-retrotransposons and MITEs: important players in the evolution of plant genomes. Curr. Opin. Genet. Dev. 5, 814 821.
    • (1995) Curr. Opin. Genet. Dev. , vol.5 , pp. 814-821
    • Wessler, S.R.1    Bureau, T.E.2    White, S.E.3
  • 50
    • 33750973059 scopus 로고    scopus 로고
    • A rice Tc1/mariner-like element transposes in yeast
    • Yang, G., Weil, C.F., Wessler, S.R., 2006. A rice Tc1/mariner-like element transposes in yeast. Plant Cell 18, 2469 2478.
    • (2006) Plant Cell , vol.18 , pp. 2469-2478
    • Yang, G.1    Weil, C.F.2    Wessler, S.R.3
  • 51
    • 34547417996 scopus 로고    scopus 로고
    • Transposition of the rice miniature inverted repeat transposable element mPing in Arabidopsis thaliana
    • Yang, G., Zhang, F., Hancock, C.N., Wessler, S.R., 2007. Transposition of the rice miniature inverted repeat transposable element mPing in Arabidopsis thaliana. Proc. Natl Acad. Sci. USA 104, 10962 10967.
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 10962-10967
    • Yang, G.1    Zhang, F.2    Hancock, C.N.3    Wessler, S.R.4
  • 52
    • 1842681942 scopus 로고    scopus 로고
    • Genome-wide comparative analysis of the transposable elements in the related species Arabidopsis thaliana and Brassica oleracea
    • Zhang, X., Wessler, S.R., 2004. Genome-wide comparative analysis of the transposable elements in the related species Arabidopsis thaliana and Brassica oleracea. Proc. Natl Acad. Sci. USA 101, 5589 5594.
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 5589-5594
    • Zhang, X.1    Wessler, S.R.2
  • 53
    • 1642343363 scopus 로고    scopus 로고
    • PIF- and Pong-like transposable elements: Distribution, evolution and relationship with Tourist-like miniature inverted-repeat transposable elements
    • Zhang, X., Jiang, N., Feschotte, C., Wessler, S.R., 2004. PIF- and Pong-like transposable elements: distribution, evolution and relationship with Tourist-like miniature inverted-repeat transposable elements. Genetics 166, 971 986.
    • (2004) Genetics , vol.166 , pp. 971-986
    • Zhang, X.1    Jiang, N.2    Feschotte, C.3    Wessler, S.R.4
  • 54
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web served for nucleic acid folding and hybridization prediction
    • Zuker, M., 2003. Mfold web served for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31, 3406 3415.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1


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