메뉴 건너뛰기




Volumn 48, Issue 5, 2005, Pages 831-839

Characterization of Stowaway MITEs in pea (Pisum sativum L.) and identification of their potential master elements

Author keywords

Insertional polymorphism; Mariner like transposons; Master elements; Pisum sativum; Stowaway MITEs

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; GENE; GENETIC POLYMORPHISM; GENETICS; GENOME; MOLECULAR GENETICS; NUCLEOTIDE REPEAT; PEA; TRANSPOSON;

EID: 33644546661     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/G05-047     Document Type: Article
Times cited : (23)

References (29)
  • 2
    • 0029808398 scopus 로고    scopus 로고
    • Flow cytometric and Feulgen densitometric analysis of genome size variation in Pisum
    • Baranyi, M., and Greilhuber, J. 1996. Flow cytometric and Feulgen densitometric analysis of genome size variation in Pisum. Theor. Appl. Genet. 92: 297-307.
    • (1996) Theor. Appl. Genet. , vol.92 , pp. 297-307
    • Baranyi, M.1    Greilhuber, J.2
  • 3
    • 0033976643 scopus 로고    scopus 로고
    • Transposable element contributions to plant gene and genome evolution
    • Bennetzen, J.L. 2000. Transposable element contributions to plant gene and genome evolution. Plant Mol. Biol. 42: 251-269.
    • (2000) Plant Mol. Biol. , vol.42 , pp. 251-269
    • Bennetzen, J.L.1
  • 4
    • 0026940433 scopus 로고
    • Tourist: A large family of small inverted repeat elements frequently associated with maize genes
    • Bureau, T.E., and Wessler, S.R. 1992. Tourist: a large family of small inverted repeat elements frequently associated with maize genes. Plant Cell. 4: 1283-1294.
    • (1992) Plant Cell. , vol.4 , pp. 1283-1294
    • Bureau, T.E.1    Wessler, S.R.2
  • 5
    • 0028450046 scopus 로고
    • Stowaway: A new family of inverted repeat elements associated with the genes of both monocotyledonous and dicotyledonous plants
    • Bureau, T.E., and Wessler, S.R. 1994. Stowaway: a new family of inverted repeat elements associated with the genes of both monocotyledonous and dicotyledonous plants. Plant Cell. 6: 907-916.
    • (1994) Plant Cell. , vol.6 , pp. 907-916
    • Bureau, T.E.1    Wessler, S.R.2
  • 7
    • 0037633476 scopus 로고    scopus 로고
    • Plant LTR-retrotransposons and MITEs: Control of transposition and impact on the evolution of plant genes and genomes
    • Casacuberta, J.M., and Santiago, N. 2003. Plant LTR-retrotransposons and MITEs: control of transposition and impact on the evolution of plant genes and genomes. Gene, 311: 1-11.
    • (2003) Gene , vol.311 , pp. 1-11
    • Casacuberta, J.M.1    Santiago, N.2
  • 8
    • 0035040245 scopus 로고    scopus 로고
    • Inter-MITE polymorphisms (IMP): A high throughput transposon-based genome mapping and fingerprinting approach
    • Chang, R.Y., O'Donoughue, L.S., and Bureau, T.E. 2001. Inter-MITE polymorphisms (IMP): a high throughput transposon-based genome mapping and fingerprinting approach. Theor. Appl. Genet. 102: 773-781.
    • (2001) Theor. Appl. Genet. , vol.102 , pp. 773-781
    • Chang, R.Y.1    O'Donoughue, L.S.2    Bureau, T.E.3
  • 11
    • 0037039351 scopus 로고    scopus 로고
    • Mariner-like transposases are widespread and diverse in flowering plants
    • U.S.A.
    • Feschotte, C., and Wessler, S.R. 2002. Mariner-like transposases are widespread and diverse in flowering plants. Proc. Natl. Acad. Sci. U.S.A. 99: 280-285.
    • (2002) Proc. Natl. Acad. Sci. , vol.99 , pp. 280-285
    • Feschotte, C.1    Wessler, S.R.2
  • 12
    • 0036250001 scopus 로고    scopus 로고
    • Plant transposable elements: Where genetics meets genomics
    • Feschotte, C., Jiang, N., and Wessler, S.R. 2002a. Plant transposable elements: where genetics meets genomics. Nature Rev. Genet. 3: 329-341.
    • (2002) Nature Rev. Genet. , vol.3 , pp. 329-341
    • Feschotte, C.1    Jiang, N.2    Wessler, S.R.3
  • 13
    • 85158058496 scopus 로고    scopus 로고
    • Miniature inverted-repeat transposable elements and their relationships to established DNA transposons
    • Edited by N.L. Craig, R. Craigie, M. Gellert, and A.M. Lambowitz. ASM Press, Washington, D.C.
    • Feschotte, C., Zhang, X., and Wessler, S.R. 2002b. Miniature inverted-repeat transposable elements and their relationships to established DNA transposons. In Mobile DNA II. Edited by N.L. Craig, R. Craigie, M. Gellert, and A.M. Lambowitz. ASM Press, Washington, D.C. pp. 1147-1157.
    • (2002) Mobile DNA II , pp. 1147-1157
    • Feschotte, C.1    Zhang, X.2    Wessler, S.R.3
  • 14
    • 0037295458 scopus 로고    scopus 로고
    • Genome-wide analysis of mariner-like transposable elements in rice reveals complex relationships with Stowaway miniature inverted repeat transposable elements (MITEs)
    • Feschotte, C., Swamy, L., and Wessler, S.R. 2003. Genome-wide analysis of mariner-like transposable elements in rice reveals complex relationships with Stowaway miniature inverted repeat transposable elements (MITEs). Genetics, 163: 747-758.
    • (2003) Genetics , vol.163 , pp. 747-758
    • Feschotte, C.1    Swamy, L.2    Wessler, S.R.3
  • 15
    • 33644528864 scopus 로고    scopus 로고
    • Kluwer Academic Publishers, Dordrecht, Netherlands
    • Galun, E. 2003. Transposable elements. Kluwer Academic Publishers, Dordrecht, Netherlands.
    • (2003) Transposable Elements
    • Galun, E.1
  • 16
    • 0031827529 scopus 로고    scopus 로고
    • Characterization of Soymar1, a Mariner element in soybean
    • Jarvik, T., and Lark, K.G. 1998. Characterization of Soymar1, a Mariner element in soybean. Genetics, 149: 1569-1574.
    • (1998) Genetics , vol.149 , pp. 1569-1574
    • Jarvik, T.1    Lark, K.G.2
  • 17
    • 0031453312 scopus 로고    scopus 로고
    • The Ty1-copia group of retrotransposons in plants: Genomic organisation, evolution, and use as molecular markers
    • The Hague
    • Kumar, A., Pearce, S.R., McLean, K., Harrison, G., Heslop-Harrison, J.S., Waugh, R., et al. 1997. The Ty1-copia group of retrotransposons in plants: genomic organisation, evolution, and use as molecular markers. Genetica (The Hague), 100: 205-217.
    • (1997) Genetica , vol.100 , pp. 205-217
    • Kumar, A.1    Pearce, S.R.2    McLean, K.3    Harrison, G.4    Heslop-Harrison, J.S.5    Waugh, R.6
  • 18
    • 0041328673 scopus 로고    scopus 로고
    • Zaba: A novel miniature transposable element present in genomes of legume plants
    • Macas, J., Neumann, P., and Požárková, D. 2003. Zaba: a novel miniature transposable element present in genomes of legume plants. Mol. Genet. Genomics. 269(5): 624-631.
    • (2003) Mol. Genet. Genomics. , vol.269 , Issue.5 , pp. 624-631
    • Macas, J.1    Neumann, P.2    Požárková, D.3
  • 19
    • 0033854088 scopus 로고    scopus 로고
    • Rice transposable elements: A survey of 73 000 sequence-tagged- connectors
    • Mao, L., Wood, T.C., Yu, Y.S., Budiman, M.A., Tomkins, J., Woo, S.S., et al. 2000. Rice transposable elements: a survey of 73 000 sequence-tagged- connectors. Genome Res. 10: 982-990.
    • (2000) Genome Res. , vol.10 , pp. 982-990
    • Mao, L.1    Wood, T.C.2    Yu, Y.S.3    Budiman, M.A.4    Tomkins, J.5    Woo, S.S.6
  • 20
    • 0034886464 scopus 로고    scopus 로고
    • Molecular and cytogenetic analysis of repetitive DNA in pea (Pisum sativum L.)
    • Neumann, P., Nouzová, M., and Macas, J. 2001. Molecular and cytogenetic analysis of repetitive DNA in pea (Pisum sativum L.). Genome, 44: 716-728.
    • (2001) Genome , vol.44 , pp. 716-728
    • Neumann, P.1    Nouzová, M.2    Macas, J.3
  • 21
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • U.S.A.
    • Pearson, W.R., and Lipman, D.J. 1988. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. U.S.A. 85: 2444-2448.
    • (1988) Proc. Natl. Acad. Sci. , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 22
    • 0017681196 scopus 로고
    • DNA sequencing with chain terminating inhibitors
    • U.S.A.
    • Sanger, F., Nicklen, D., and Coulson, A.R. 1977. DNA sequencing with chain terminating inhibitors. Proc. Natl. Acad. Sci. U.S.A. 74: 5463-5467.
    • (1977) Proc. Natl. Acad. Sci. , vol.74 , pp. 5463-5467
    • Sanger, F.1    Nicklen, D.2    Coulson, A.R.3
  • 23
    • 0032413101 scopus 로고    scopus 로고
    • Evidence that a recent increase in maize genome size was caused by the massive amplification of intergene retrotransposons
    • Lond.
    • SanMiguel, P., and Bennetzen, J.L. 1998. Evidence that a recent increase in maize genome size was caused by the massive amplification of intergene retrotransposons. Ann. Bot. (Lond). 82: 37-44.
    • (1998) Ann. Bot. , vol.82 , pp. 37-44
    • Sanmiguel, P.1    Bennetzen, J.L.2
  • 24
    • 0025008168 scopus 로고
    • Sequence logos: A new way to display consensus sequences
    • Schneider, T.D., and Stephens, R.M. 1990. Sequence logos: a new way to display consensus sequences. Nucleic Acids Res. 18: 6097-6100.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 6097-6100
    • Schneider, T.D.1    Stephens, R.M.2
  • 25
    • 0029654258 scopus 로고
    • A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis
    • Sonnhammer, E.L.L., and Durbin, R. 1995. A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis. Gene, 167: GC1-10.
    • (1995) Gene , vol.167
    • Sonnhammer, E.L.L.1    Durbin, R.2
  • 26
    • 0030158571 scopus 로고    scopus 로고
    • The Staden sequence analysis package
    • Staden, R. 1996. The Staden sequence analysis package. Mol. Biotechnol. 5: 233-241.
    • (1996) Mol. Biotechnol. , vol.5 , pp. 233-241
    • Staden, R.1
  • 27
    • 0034084963 scopus 로고    scopus 로고
    • The complete sequence of 340 kb of DNA around the rice Adh1-Adh2 region reveals interrupted colinearity with maize chromosome 4
    • Tarchini, R., Biddle, P., Wineland, R., Tingey, S., and Rafalski, A. 2000. The complete sequence of 340 kb of DNA around the rice Adh1-Adh2 region reveals interrupted colinearity with maize chromosome 4. Plant Cell. 12: 381-391.
    • (2000) Plant Cell. , vol.12 , pp. 381-391
    • Tarchini, R.1    Biddle, P.2    Wineland, R.3    Tingey, S.4    Rafalski, A.5
  • 28
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J.D., Higgins, D.G., and Gibson, T.J. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 29
    • 0033951447 scopus 로고    scopus 로고
    • Recent, extensive, and preferential insertion of members of the miniature inverted-repeat transposable element family Heartbreaker into genie regions of maize
    • U.S.A.
    • Zhang, Q., Arbuckle, J., and Wessler, S.R. 2000. Recent, extensive, and preferential insertion of members of the miniature inverted-repeat transposable element family Heartbreaker into genie regions of maize. Proc. Natl. Acad. Sci. U.S.A. 97: 1160-1165.
    • (2000) Proc. Natl. Acad. Sci. , vol.97 , pp. 1160-1165
    • Zhang, Q.1    Arbuckle, J.2    Wessler, S.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.