메뉴 건너뛰기




Volumn 9, Issue 1, 2009, Pages

Evolution of C2H2-zinc finger genes revisited

Author keywords

[No Author keywords available]

Indexed keywords

C2H2 ZINC FINGER PROTEIN; KRAB PROTEIN; PROTEIN DERIVATIVE; UNCLASSIFIED DRUG; ZINC FINGER PROTEIN;

EID: 64549105618     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-9-51     Document Type: Article
Times cited : (30)

References (22)
  • 1
    • 33745179207 scopus 로고    scopus 로고
    • A comprehensive catalog of human KRAB-associated zinc finger genes: Insights into the evolutionary history of a large family of transcriptional repressors
    • 16606702 10.1101/gr.4842106
    • A comprehensive catalog of human KRAB-associated zinc finger genes: insights into the evolutionary history of a large family of transcriptional repressors. S Huntley DM Baggott AT Hamilton M Tran-Gyamfi S Yang J Kim L Gordon E Branscomb L Stubbs, Genome Res 2006 16 5 669 677 16606702 10.1101/gr.4842106
    • (2006) Genome Res , vol.16 , Issue.5 , pp. 669-677
    • Huntley, S.1    Baggott, D.M.2    Hamilton, A.T.3    Tran-Gyamfi, M.4    Yang, S.5    Kim, J.6    Gordon, L.7    Branscomb, E.8    Stubbs, L.9
  • 2
    • 46749157875 scopus 로고    scopus 로고
    • Evolution of C2H2-zinc finger genes and subfamilies in mammals: Species-specific duplication and loss of clusters, genes and effector domains
    • 18559114 10.1186/1471-2148-8-176
    • Evolution of C2H2-zinc finger genes and subfamilies in mammals: species-specific duplication and loss of clusters, genes and effector domains. HD Tadepally G Burger M Aubry, BMC Evol Biol 2008 8 176 18559114 10.1186/1471-2148-8-176
    • (2008) BMC Evol Biol , vol.8 , pp. 176
    • Tadepally, H.D.1    Burger, G.2    Aubry, M.3
  • 3
    • 33751374804 scopus 로고    scopus 로고
    • Meisetz and the birth of the KRAB motif
    • 10.1093/bioinformatics/btl498 17032681
    • Meisetz and the birth of the KRAB motif. Z Birtle CP Ponting, Bioinformatics 2006 22 23 2841 2845 10.1093/bioinformatics/btl498 17032681
    • (2006) Bioinformatics , vol.22 , Issue.23 , pp. 2841-2845
    • Birtle, Z.1    Ponting, C.P.2
  • 4
    • 25144467005 scopus 로고    scopus 로고
    • The SCAN domain family of zinc finger transcription factors
    • 10.1016/j.gene.2005.06.022 16139965
    • The SCAN domain family of zinc finger transcription factors. LC Edelstein T Collins, Gene 2005 359 1 17 10.1016/j.gene.2005.06.022 16139965
    • (2005) Gene , vol.359 , pp. 1-17
    • Edelstein, L.C.1    Collins, T.2
  • 5
    • 24344500211 scopus 로고    scopus 로고
    • Initial sequence of the chimpanzee genome and comparison with the human genome
    • 10.1038/nature04072 16136131
    • Initial sequence of the chimpanzee genome and comparison with the human genome. Chimpanzee Sequencing and Analysis Consortium, Nature 2005 437 7055 69 87 10.1038/nature04072 16136131
    • (2005) Nature , vol.437 , Issue.7055 , pp. 69-87
    • Sequencing, C.1    Consortium, A.2
  • 6
    • 0031743421 scopus 로고    scopus 로고
    • Profile hidden Markov models
    • 10.1093/bioinformatics/14.9.755 9918945
    • Profile hidden Markov models. SR Eddy, Bioinformatics 1998 14 9 755 763 10.1093/bioinformatics/14.9.755 9918945
    • (1998) Bioinformatics , vol.14 , Issue.9 , pp. 755-763
    • Eddy, S.R.1
  • 7
    • 0029115782 scopus 로고
    • Isolation and characterization of a novel zinc-finger protein with transcription repressor activity
    • 10.1074/jbc.270.38.22143 7673192
    • Isolation and characterization of a novel zinc-finger protein with transcription repressor activity. AJ Williams LM Khachigian T Shows T Collins, J Biol Chem 1995 270 38 22143 22152 10.1074/jbc.270.38.22143 7673192
    • (1995) J Biol Chem , vol.270 , Issue.38 , pp. 22143-22152
    • Williams, A.J.1    Khachigian, L.M.2    Shows, T.3    Collins, T.4
  • 8
    • 0037835613 scopus 로고    scopus 로고
    • The SCAN domain defines a large family of zinc finger transcription factors
    • 10.1016/S0378-1119(03)00509-2 12801630
    • The SCAN domain defines a large family of zinc finger transcription factors. TL Sander KF Stringer JL Maki P Szauter JR Stone T Collins, Gene 2003 310 29 38 10.1016/S0378-1119(03)00509-2 12801630
    • (2003) Gene , vol.310 , pp. 29-38
    • Sander, T.L.1    Stringer, K.F.2    Maki, J.L.3    Szauter, P.4    Stone, J.R.5    Collins, T.6
  • 9
    • 0025920615 scopus 로고
    • The evolutionarily conserved Kruppel-associated box domain defines a subfamily of eukaryotic multifingered proteins
    • 2023909 10.1073/pnas.88.9.3608
    • The evolutionarily conserved Kruppel-associated box domain defines a subfamily of eukaryotic multifingered proteins. EJ Bellefroid DA Poncelet PJ Lecocq O Revelant JA Martial, Proc Natl Acad Sci USA 1991 88 9 3608 3612 2023909 10.1073/pnas.88.9.3608
    • (1991) Proc Natl Acad Sci USA , vol.88 , Issue.9 , pp. 3608-3612
    • Bellefroid, E.J.1    Poncelet, D.A.2    Lecocq, P.J.3    Revelant, O.4    Martial, J.A.5
  • 10
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • 9254694 10.1093/nar/25.17.3389
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. SF Altschul TL Madden AA Schaffer J Zhang Z Zhang W Miller DJ Lipman, Nucleic Acids Res 1997 25 17 3389 3402 9254694 10.1093/nar/25.17.3389
    • (1997) Nucleic Acids Res , vol.25 , Issue.17 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6    Lipman, D.J.7
  • 11
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • 7984417 10.1093/nar/22.22.4673
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. JD Thompson DG Higgins TJ Gibson, Nucleic Acids Res 1994 22 22 4673 4680 7984417 10.1093/nar/22.22.4673
    • (1994) Nucleic Acids Res , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 12
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • 10.1080/10635150390235520 14530136
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. S Guindon O Gascuel, Syst Biol 2003 52 5 696 704 10.1080/10635150390235520 14530136
    • (2003) Syst Biol , vol.52 , Issue.5 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 13
    • 33745256005 scopus 로고    scopus 로고
    • Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative
    • 10.1080/10635150600755453 16785212
    • Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative. M Anisimova O Gascuel, Syst Biol 2006 55 4 539 552 10.1080/10635150600755453 16785212
    • (2006) Syst Biol , vol.55 , Issue.4 , pp. 539-552
    • Anisimova, M.1    Gascuel, O.2
  • 14
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • 10508846 10.1101/gr.9.9.868
    • CAP3: A DNA sequence assembly program. X Huang A Madan, Genome Res 1999 9 9 868 877 10508846 10.1101/gr.9.9.868
    • (1999) Genome Res , vol.9 , Issue.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 17
    • 33745134398 scopus 로고    scopus 로고
    • Evolutionary expansion and divergence in the ZNF91 subfamily of primate-specific zinc finger genes
    • 16606703 10.1101/gr.4843906
    • Evolutionary expansion and divergence in the ZNF91 subfamily of primate-specific zinc finger genes. AT Hamilton S Huntley M Tran-Gyamfi DM Baggott L Gordon L Stubbs, Genome Res 2006 16 5 584 594 16606703 10.1101/gr.4843906
    • (2006) Genome Res , vol.16 , Issue.5 , pp. 584-594
    • Hamilton, A.T.1    Huntley, S.2    Tran-Gyamfi, M.3    Baggott, D.M.4    Gordon, L.5    Stubbs, L.6
  • 18
    • 0036899102 scopus 로고    scopus 로고
    • KRAB zinc finger proteins: An analysis of the molecular mechanisms governing their increase in numbers and complexity during evolution
    • 12446804
    • KRAB zinc finger proteins: an analysis of the molecular mechanisms governing their increase in numbers and complexity during evolution. C Looman M Abrink C Mark L Hellman, Mol Biol Evol 2002 19 12 2118 2130 12446804
    • (2002) Mol Biol Evol , vol.19 , Issue.12 , pp. 2118-2130
    • Looman, C.1    Abrink, M.2    Mark, C.3    Hellman, L.4
  • 19
    • 0038141095 scopus 로고    scopus 로고
    • Differential expansion of zinc-finger transcription factor loci in homologous human and mouse gene clusters
    • 12743021 10.1101/gr.963903
    • Differential expansion of zinc-finger transcription factor loci in homologous human and mouse gene clusters. M Shannon AT Hamilton L Gordon E Branscomb L Stubbs, Genome Res 2003 13 6A 1097 1110 12743021 10.1101/gr.963903
    • (2003) Genome Res , vol.13 , Issue.6 A , pp. 1097-1110
    • Shannon, M.1    Hamilton, A.T.2    Gordon, L.3    Branscomb, E.4    Stubbs, L.5
  • 20
    • 0037218919 scopus 로고    scopus 로고
    • Sp1- and Kruppel-like transcription factors
    • 12620113 10.1186/gb-2003-4-2-206
    • Sp1- and Kruppel-like transcription factors. J Kaczynski T Cook R Urrutia, Genome Biol 2003 4 2 206 12620113 10.1186/gb-2003-4-2-206
    • (2003) Genome Biol , vol.4 , Issue.2 , pp. 206
    • Kaczynski, J.1    Cook, T.2    Urrutia, R.3
  • 21
    • 0346274978 scopus 로고    scopus 로고
    • KRAB-containing zinc-finger repressor proteins
    • 14519192 10.1186/gb-2003-4-10-231
    • KRAB-containing zinc-finger repressor proteins. R Urrutia, Genome Biol 2003 4 10 231 14519192 10.1186/gb-2003-4-10-231
    • (2003) Genome Biol , vol.4 , Issue.10 , pp. 231
    • Urrutia, R.1
  • 22
    • 55249115567 scopus 로고    scopus 로고
    • A network of Kruppel-like Factors (Klfs). Klf8 is repressed by Klf3 and activated by Klf1 in vivo
    • 10.1074/jbc.M804831200 18687676
    • A network of Kruppel-like Factors (Klfs). Klf8 is repressed by Klf3 and activated by Klf1 in vivo. SA Eaton AP Funnell N Sue H Nicholas RC Pearson M Crossley, J Biol Chem 2008 283 40 26937 26947 10.1074/jbc.M804831200 18687676
    • (2008) J Biol Chem , vol.283 , Issue.40 , pp. 26937-26947
    • Eaton, S.A.1    Funnell, A.P.2    Sue, N.3    Nicholas, H.4    Pearson, R.C.5    Crossley, M.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.