Kinetic characterization, expression and molecular modeling of a chitinase from the pacific white shrimp litopenaeus vannamei

Journal of Food Biochemistry

Volumn 33, Issue 2, 2009, Pages 246-259

  Sotelo Mundo, R R ^a,b   Moran Palacio E F ^a,b   Garcia Orozco K D ^a   Figueroa Soto, C ^a,c   Romo Figueroa, M G ^a   Valenzuela Soto, E M ^a   Yepiz Plascencia, G ^a  

^a CENTRO DE INVESTIGACIÓN EN ALIMENTACIÓN Y DESARROLLO   (Mexico)

^b UNIVERSIDAD DE SONORA   (Mexico)

^c Centro de Estudios Superiores del Estado de Sonora   (Mexico)

Author keywords

[No Author keywords available]

Indexed keywords

DECAPODA (CRUSTACEA); LITOPENAEUS VANNAMEI; MARSUPENAEUS JAPONICUS;

EID: 64349086138     PISSN: 01458884     EISSN: 17454514     Source Type: Journal    
DOI: 10.1111/j.1745-4514.2009.00215.x     Document Type: Article

References (27)

1. BRADFORD, M.M. 1976. A rapid and sensitive method for the quantitation of micrograms of protein utilizing the principle of protein binding. Anal. Biochem. 72, 248 254.
2. COLLABORATIVE COMPUTATIONAL PROJECT NUMBER 4. 1994. The CCP4 suite: Programs for protein crystallography. Acta Crystallogr. D 50, 760 763.
3. DELANO, W.L. 2002. The PyMOL molecular visualization system. http://www.pymol.org (accessed February 10, 2009)
4. FUKAMIZO, T. 2000. Chitinolytic enzymes: Catalysis, substrate binding, and their application. Curr. Protein. Pept. Sci. 1, 105 124.
5. FUSETTI, F., VON MOELLER, H., HOUSTON, D., ROZEBOOM, H.J., DIJKSTRA, B.W., BOOT, R.G., AERTS, J.M.F. G. and VAN AALTEN, D.M.F. 2002. Structure of human chitotriosidase: Implications for specific inhibitor design and function of mammalian chitinase-like lectins. J. Biol. Chem. 277, 25537 25544.
6. GAXIOLA, G., CUZON, G., GARCIA, T., TABOADA, G., BRITO, R., CHIMAL, M.E., PAREDES, A., SOTO, L., ROSAS, C. VAN WORMHOUDT, A. 2005. Factorial effects of salinity, dietary carbohydrate and moult cycle on digestive carbohydrases and hexokinases in Litopenaeus vannamei (Boone, 1931). Comp. Biochem. Physiol. A 140, 29 39.
7. GUEX, N. PEITSCH, M.C. 1997. SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modelling. Electrophoresis 18, 2714 2723.
8. GÓMEZ-ANDURO, G., BARILLAS-MURY, C., PEREGRINO-URIARTE, A., GUPTA, L., GOLLAS-GALVÁN, T., HERNÁNDEZ-LÓPEZ, J. YEPIZ-PLASCENCIA, G. 2006. The cytosolic manganese superoxide dismutase from the shrimp Litopenaeus vannamei: Molecular cloning and expression. Dev. Comp. Immunol. 30, 893 900.
9. HENRISSAT, B. 1991. A classification of glycosyl hydrolases based on amino acid sequence similarity. Biochem. J. 280, 309 316.
10. HENRISSAT, B., CALLEBAUT, I., FABREGA, S., LEHN, P., MORNON, J.P. DAVIES, G. 1995. Conserved catalytic machinery and the prediction of a common fold for several families of glycosyl hydrolases. Proc. Natl. Acad. Sci. USA 92, 7090 7094.
11. JOHNSTON, D. FREEMAN, J. 2005. Dietary preference and digestive enzyme activities as indicators of trophic resource utilization by six species of crab. Biol. Bull. 208, 36 46.
12. KOGA, D., MIZUKI, K., IDE, A., KONO, M., MATSUI, T. SHIMIZU, C. 1990. Kinetics of a chitinase of a prawn, Penaeus japonicus. Agric. Biol. Chem. 54, 2505 2512.
13. LAEMMLI, U.K. 1970. Cleavage of structural proteins during the assembly of the head of the bacteriophage T4. Nature 277, 680 685.
14. MCCREATH, K.J. GOODAY, G.W. 1992. A rapid and sensitive microassay for determination of chitinolytic activity. J. Microbiol Methods 14, 229 237.
15. MUHLIA-ALMAZÁN, A., SÁNCHEZ-PAZ, A., GARCÍA- CARREÑO, F., PEREGRINO-URIARTE, A.B. YEPIZ-PLASCENCIA, G. 2005. Starvation and diet composition affect mRNA levels of the high density-lipoprotein- δ-glucan binding protein in the shrimp Litopenaeus vannamei. Comp. Biochem. Physiol. B 142, 209 216.
16. PEITSCH, M.C. 1995. Protein modeling by E-mail. Bio/Technology 13, 658 660.
17. RENKEMA, G.H., BOOT, R.G., MUIJSERS, A.O., DONKER-KOOPMAN W.E. AERTS, J.M. 1995. Purification and characterization of human chitotriosidase, a novel member of the chitinase family of proteins. J. Biol. Chem. 270, 2198 2202.
18. ROMO-FIGUEROA, M.G., VARGAS-REQUENA, C., SOTELO-MUNDO, R.R., VARGAS-ALBORES, F., HIGUERA-CIAPARA, I., SÖDERHÄLL, K. YEPIZ-PLASCENCIA, G. 2004. Molecular cloning of a δ-glucan pattern-recognition lipoprotein from the white shrimp Penaeus (Litopenaeus) vannamei: Correlations between the deduced amino acid sequence and the native protein structure. Dev. Comp. Immunol. 28, 713 726.
19. SCHWEDE, T., KOPP, J., GUEX, N. PEITSCH, M.C. 2003. SWISS-MODEL: An automated protein homology-modeling server. Nucleic. Acids Res. 31, 3381 3385.
20. TAN, S.H., DEGNAN, B.M. LEHNERT, S.A. 2000. The Penaeus monodon chitinase 1 gen is differentially expressed in the hepatopancreas during the molt cycle. Mar. Biotechnol. 2, 126 135.
21. WATANABE, T. KONO, M. 1997. Isolation of a cDNA encoding a chitinase family protein from cuticular tissues of the Kuruma prawn Penaeus japonicus. Zool. Sci. 14, 65 68.
22. WATANABE, T., KONO, M., AIDA, K. NAGASAWA, H. 1996. Isolation of a cDNA encoding a putative chitinase precursor in the Kuruma prawn Penaeus japonicus. Mol. Mar. Biol. Biotechnol. 5, 299 303.
23. WATANABE, T., KONO, M., AIDA, K. NAGASAWA, H. 1998. Purification and molecular cloning of a chitinase expressed in the hepatopancreas of the penaeid prawn Penaeus japonicus. Biochim. Biophys. Acta 1382, 181 185.
24. WINN, M., ISUPOV, M. MURSHUDOV, G.N. 2001. Use of TLS parameters to model anisotropic displacements in macromolecular refinement. Acta Crystallogr. D 57, 122 133.
25. WRAY, W., BOULIKAS, T., WRAY, V.P. HANCOCK, R. 1981. Silver staining of proteins in polyacrylamide gels. Anal. Biochem 118, 197 203.
26. XIE, X.L., CHEN, Q.X., LIN, J.C. WANG, Y. 2004. Purification and some properties of δ-N-acetyl-D-glucosaminidase from prawn (Penaeus vannamei). Mar. Biol 146, 143 148.
27. ZHU, Q., DENG, Y., VANKA, P., BROWN, S.J., MUTHUKRISHNAN, S. KRAMER, K.J. 2004. Computational identification of novel chitinase-like proteins in the Drosophila melanogaster genome. Bioinformatics 20, 161 169.