-
1
-
-
33644624369
-
DNAligases: Structure, reaction mechanism, and function
-
Tomkinson AE, Vijayakumar S, Pascal JM, Ellenberger T (2006) DNAligases: Structure, reaction mechanism, and function. Chem Rev 106:687-699.
-
(2006)
Chem Rev
, vol.106
, pp. 687-699
-
-
Tomkinson, A.E.1
Vijayakumar, S.2
Pascal, J.M.3
Ellenberger, T.4
-
2
-
-
50649116450
-
Eukaryotic DNA ligases: Structural and functional insights
-
Ellenberger T, Tomkinson AE (2008) Eukaryotic DNA ligases: Structural and functional insights. Annu Rev Biochem 77:313-338.
-
(2008)
Annu Rev Biochem
, vol.77
, pp. 313-338
-
-
Ellenberger, T.1
Tomkinson, A.E.2
-
3
-
-
0016273515
-
DNA ligase: Structure, mechanism, and function
-
Lehman IR (1974) DNA ligase: Structure, mechanism, and function. Science 186:790797.
-
(1974)
Science
, vol.186
, pp. 790797
-
-
Lehman, I.R.1
-
4
-
-
33745933900
-
The closed structure of an archaeal DNA ligase from Pyrococcus furiosus
-
Nishida H, Kiyonari S, Ishino Y, Morikawa K (2006) The closed structure of an archaeal DNA ligase from Pyrococcus furiosus. J Mol Biol 360:956-967.
-
(2006)
J Mol Biol
, vol.360
, pp. 956-967
-
-
Nishida, H.1
Kiyonari, S.2
Ishino, Y.3
Morikawa, K.4
-
5
-
-
33749668010
-
A flexible interface between DNA ligase and PCNA supports conformational switching and efficient ligation of DNA
-
Pascal JM, et al. (2006) A flexible interface between DNA ligase and PCNA supports conformational switching and efficient ligation of DNA. Mol Cell 24:279-291.
-
(2006)
Mol Cell
, vol.24
, pp. 279-291
-
-
Pascal, J.M.1
-
6
-
-
9644289536
-
Human DNA ligase I completely encircles and partially unwinds nicked DNA
-
Pascal JM, O'Brien PJ, Tomkinson AE, Ellenberger T (2004) Human DNA ligase I completely encircles and partially unwinds nicked DNA. Nature 432:473-478.
-
(2004)
Nature
, vol.432
, pp. 473-478
-
-
Pascal, J.M.1
O'Brien, P.J.2
Tomkinson, A.E.3
Ellenberger, T.4
-
7
-
-
34249066085
-
PCNA, the maestro of the replication fork
-
Moldovan GL, Pfander B, Jentsch S (2007) PCNA, the maestro of the replication fork. Cell 129:665-679.
-
(2007)
Cell
, vol.129
, pp. 665-679
-
-
Moldovan, G.L.1
Pfander, B.2
Jentsch, S.3
-
8
-
-
0041885325
-
Proliferating cell nuclear antigen (PCNA): A dancer with many partners
-
Maga G, Hubscher U (2003) Proliferating cell nuclear antigen (PCNA): A dancer with many partners. J Cell Sci 116:3051-3060.
-
(2003)
J Cell Sci
, vol.116
, pp. 3051-3060
-
-
Maga, G.1
Hubscher, U.2
-
9
-
-
0037523309
-
The diverse spectrum of sliding clamp interacting proteins
-
Vivona JB, Kelman Z (2003) The diverse spectrum of sliding clamp interacting proteins. FEBS Lett 546:167-172, 2003.
-
(2003)
FEBS Lett
, vol.546
, pp. 167-172
-
-
Vivona, J.B.1
Kelman, Z.2
-
10
-
-
0032031972
-
PCNA binding through a conserved motif
-
Warbrick E (1998) PCNA binding through a conserved motif. BioEssays 20:195-199.
-
(1998)
BioEssays
, vol.20
, pp. 195-199
-
-
Warbrick, E.1
-
11
-
-
0030692134
-
An interaction between DNA ligase I and proliferating cell nuclear antigen: Implications for Okazaki fragment synthesis and joining
-
Levin DS, Bai W, Yao N, O'Donnell M, Tomkinson AE (1997) An interaction between DNA ligase I and proliferating cell nuclear antigen: Implications for Okazaki fragment synthesis and joining. Proc Natl Acad Sci USA 94:12863-12868.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 12863-12868
-
-
Levin, D.S.1
Bai, W.2
Yao, N.3
O'Donnell, M.4
Tomkinson, A.E.5
-
12
-
-
0032126647
-
-
Montecucco A, et al. (1998) DNA ligase I is recruited to sites of DNA replication by an interaction with proliferating cell nuclear antigen: Identification of a common targeting mechanism for the assembly of replication factories.EMBO J 17:3786-3795.
-
Montecucco A, et al. (1998) DNA ligase I is recruited to sites of DNA replication by an interaction with proliferating cell nuclear antigen: Identification of a common targeting mechanism for the assembly of replication factories.EMBO J 17:3786-3795.
-
-
-
-
13
-
-
33748767654
-
Identification of a novel binding motif in Pyrococcus furiosus DNA ligase for the functional interaction with proliferating cell nuclear antigen
-
Kiyonari S, Takayama K, Nishida H, Ishino Y (2006) Identification of a novel binding motif in Pyrococcus furiosus DNA ligase for the functional interaction with proliferating cell nuclear antigen. J Biol Chem 281:28023-28032.
-
(2006)
J Biol Chem
, vol.281
, pp. 28023-28032
-
-
Kiyonari, S.1
Takayama, K.2
Nishida, H.3
Ishino, Y.4
-
14
-
-
20144367589
-
Structural basis for recruitment of human flap endonuclease 1 to PCNA
-
Sakurai S, et al. (2005) Structural basis for recruitment of human flap endonuclease 1 to PCNA. EMBO J 24:683-693.
-
(2005)
EMBO J
, vol.24
, pp. 683-693
-
-
Sakurai, S.1
-
15
-
-
0037251411
-
A heterotrimeric PCNA in the hyperthermophilic archaeon Sulfolobus solfataricus
-
Dionne I, Nookala RK, Jackson SP, Doherty AJ, Bell SD (2003) A heterotrimeric PCNA in the hyperthermophilic archaeon Sulfolobus solfataricus. Mol Cell 11:275-282.
-
(2003)
Mol Cell
, vol.11
, pp. 275-282
-
-
Dionne, I.1
Nookala, R.K.2
Jackson, S.P.3
Doherty, A.J.4
Bell, S.D.5
-
16
-
-
25444480278
-
Open clamp structure in the clamp-loading complex visualized by electron microscopic image analysis
-
Miyata T, et al. (2005) Open clamp structure in the clamp-loading complex visualized by electron microscopic image analysis. Proc Natl Acad Sci USA 102:13795-13800.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 13795-13800
-
-
Miyata, T.1
-
17
-
-
0026717535
-
-
KongXP, Onrust R, O'Donnell M, Kuriyan J (1992) Three-dimensional structure of the β3-subunitof E. coli DNA polymerase III holoenzyme: Asliding DNA clamp. Cell 69:425-437.
-
KongXP, Onrust R, O'Donnell M, Kuriyan J (1992) Three-dimensional structure of the β3-subunitof E. coli DNA polymerase III holoenzyme: Asliding DNA clamp. Cell 69:425-437.
-
-
-
-
18
-
-
0028618183
-
Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA
-
Krishna TS, Kong XP, Gary S, Burgers PM, Kuriyan J (1994) Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA. Cell 79:1233-1243.
-
(1994)
Cell
, vol.79
, pp. 1233-1243
-
-
Krishna, T.S.1
Kong, X.P.2
Gary, S.3
Burgers, P.M.4
Kuriyan, J.5
-
19
-
-
0030592544
-
Structure of the C-terminal region of p21(WAF1/CIP1) complexed with human PCNA
-
Gulbis JM, Kelman Z, Hurwitz J, O'Donnell M, Kuriyan J (1996) Structure of the C-terminal region of p21(WAF1/CIP1) complexed with human PCNA. Cell 87:297-306.
-
(1996)
Cell
, vol.87
, pp. 297-306
-
-
Gulbis, J.M.1
Kelman, Z.2
Hurwitz, J.3
O'Donnell, M.4
Kuriyan, J.5
-
20
-
-
0035107856
-
Crystal structure of an archaeal DNA sliding clamp: Proliferating cell nuclear antigen from Pyrococcus furiosus
-
Matsumiya S, Ishino Y, Morikawa K (2001) Crystal structure of an archaeal DNA sliding clamp: Proliferating cell nuclear antigen from Pyrococcus furiosus. Protein Sci 10:1723.
-
(2001)
Protein Sci
, vol.10
, pp. 1723
-
-
Matsumiya, S.1
Ishino, Y.2
Morikawa, K.3
-
21
-
-
37649016453
-
Structure of a sliding clamp on DNA
-
Georgescu RE, et al. (2008) Structure of a sliding clamp on DNA. Cell 132:43-54.
-
(2008)
Cell
, vol.132
, pp. 43-54
-
-
Georgescu, R.E.1
-
22
-
-
33845625617
-
Proliferating cell nuclear antigen loaded onto double-stranded DNA: Dynamics, minor groove interactions, and functional implications
-
Ivanov I, Chapados BR, McCammon JA, Tainer JA (2006) Proliferating cell nuclear antigen loaded onto double-stranded DNA: Dynamics, minor groove interactions, and functional implications. Nucleic Acids Res 34:6023-6033.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 6023-6033
-
-
Ivanov, I.1
Chapados, B.R.2
McCammon, J.A.3
Tainer, J.A.4
-
23
-
-
34447555317
-
Structural basis for nick recognition by a minimal pluripotent DNA ligase
-
Nair PA, et al. (2007) Structural basis for nick recognition by a minimal pluripotent DNA ligase. Nat Struct Mol Biol 14:770-778.
-
(2007)
Nat Struct Mol Biol
, vol.14
, pp. 770-778
-
-
Nair, P.A.1
-
24
-
-
0029938467
-
Crystal structure of an ATP-dependent DNA ligase from bacteriophage T7
-
Subramanya HS, Doherty AJ, Ashford SR, Wigley DB (1996) Crystal structure of an ATP-dependent DNA ligase from bacteriophage T7. Cell 85:607-615.
-
(1996)
Cell
, vol.85
, pp. 607-615
-
-
Subramanya, H.S.1
Doherty, A.J.2
Ashford, S.R.3
Wigley, D.B.4
-
25
-
-
0039710446
-
Regulation of DNA replication and repair proteins through interaction with the front side of proliferating cell nuclear antigen
-
Jonsson ZO, Hindges R, Hubscher U (1998) Regulation of DNA replication and repair proteins through interaction with the front side of proliferating cell nuclear antigen. EMBO J 17:2412-2425.
-
(1998)
EMBO J
, vol.17
, pp. 2412-2425
-
-
Jonsson, Z.O.1
Hindges, R.2
Hubscher, U.3
-
26
-
-
33744472228
-
-
Nishida H, Tsuchiya D, Ishino Y, Morikawa K (2005) Overexpression, purification, and crystallization of an archaeal DNA ligase from Pyrococcus furiosus. Acta Crystallogr F 61:1100-1102.
-
Nishida H, Tsuchiya D, Ishino Y, Morikawa K (2005) Overexpression, purification, and crystallization of an archaeal DNA ligase from Pyrococcus furiosus. Acta Crystallogr F 61:1100-1102.
-
-
-
-
27
-
-
0033377664
-
EMAN: Semiautomated software for high- resolution single-particle reconstructions
-
Ludtke SJ, Baldwin PR, Chiu W (1999) EMAN: Semiautomated software for high- resolution single-particle reconstructions. J Struct Biol 128:82-97.
-
(1999)
J Struct Biol
, vol.128
, pp. 82-97
-
-
Ludtke, S.J.1
Baldwin, P.R.2
Chiu, W.3
-
28
-
-
0029916485
-
A new generation of the IMAGIC image processing system
-
van Heel M, Harauz G, Orlova EV, Schmidt R, Schatz M (1996) A new generation of the IMAGIC image processing system. J Struct Biol 116:17-24.
-
(1996)
J Struct Biol
, vol.116
, pp. 17-24
-
-
van Heel, M.1
Harauz, G.2
Orlova, E.V.3
Schmidt, R.4
Schatz, M.5
-
29
-
-
4444221565
-
UCSF Chimera: A visualization system for exploratory research and analysis
-
Pettersen EF, et al. (2004) UCSF Chimera: A visualization system for exploratory research and analysis. J Comput Chem 25:1605-1612.
-
(2004)
J Comput Chem
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
|