Genome-based expression profiles as a single standardized microarray platform for the diagnosis of bladder pain syndrome/interstitial cystitis: An array of 139 genes model

International Urogynecology Journal

Volumn 20, Issue 5, 2009, Pages 515-522

  Tseng, Ling Hong ^a   Chen, Ilene ^b   Chen, Ming Yang ^c   Lee, Chyi Long ^a   Lin, Yi Hao ^a   Lloyd, L Keith ^d  

^a CHANG GUNG UNIVERSITY   (Taiwan)

^b UNIVERSITY OF SYDNEY   (Australia)

^c Stanford University   (United States)

^d UNIVERSITY OF ALABAMA SCHOOL OF MEDICINE   (United States)

Author keywords

Allergic inflammation; Bladder pain syndrome interstitial cystitis (PBP IC); cDNA microarray; Fcepisilon RI; Mast cell

Indexed keywords

ACTIN; ADIPOCYTOKINE; EPSILON OPIATE RECEPTOR; FC RECEPTOR; MITOGEN ACTIVATED PROTEIN KINASE; PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR; PHOSPHATE BUFFERED SALINE; TRANSFORMING GROWTH FACTOR BETA;

AMINO ACID METABOLISM; APOPTOSIS; ARTICLE; BLADDER EPITHELIUM; CELL ACTIVATION; CLINICAL ARTICLE; CONTROLLED STUDY; CYSTALGIA; CYSTOSCOPY; CYTOSKELETON; DNA MICROARRAY; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE MAPPING; HOMEOSTASIS; HUMAN; HUMAN CELL; HUMAN TISSUE; INTERSTITIAL CYSTITIS; MAST CELL; NERVOUS SYSTEM DEVELOPMENT; PRIORITY JOURNAL; SIGNAL TRANSDUCTION; SMOOTH MUSCLE CONTRACTION; TRANSCRIPTION REGULATION;

ACTINS; ADIPOKINES; AMINO ACIDS; APOPTOSIS; CARBOHYDRATE METABOLISM; CASE-CONTROL STUDIES; CELLS, CULTURED; CYSTITIS, INTERSTITIAL; CYTOKINES; DNA, COMPLEMENTARY; EPITHELIAL CELLS; FEMALE; GENE EXPRESSION PROFILING; HOMEOSTASIS; HUMANS; LIPID METABOLISM; LOGISTIC MODELS; MAP KINASE SIGNALING SYSTEM; MUSCLE CONTRACTION; MUSCLE, SMOOTH; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PEROXISOME PROLIFERATOR-ACTIVATED RECEPTORS; TRANSCRIPTOME; TRANSFORMING GROWTH FACTOR BETA; UROTHELIUM;

EID: 63749125709     PISSN: 09373462     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00192-009-0822-0     Document Type: Article

References (24)

1. Rover E, Esdridge M (2005) Interstitial cystitis. eMedicine from Web MD
2. Parsons CL (2007) the role of the urinary epithelium in the pathogenesis of interstitial cystitis/prostatitis/urethritis. Urology 69(4 Suppl):9-16 Review
3. Fall M, Oberpenning F, Peeker R (2008) Treatment of bladder pain syndrome/interstitial cystitis 2008: Can we make evidence-based decisions? Eur Urol 54:65-75 Epub 2008. Review
4. Erickson DR, Schwarze SR, Dixon JK, Clark CJ, Hersh MA (2008) Differentiation associated changes in gene expression profiles of interstitial cystitis and control urothelial cells. J Urol 180:2681-2687 Epub 2008
5. Kanehisa M et al (2006) From genomics to chemical genomics: New developments in KEGG. Nucleic Acids Res 34:D354-D357
6. Nature Biotechnology (2000) Signal transduction as a drug discovery platform. Nature Biotechnol 18:IT37-IT39
7. Kanehisa M, Goto S, Kawashima S, Nakaya A (2002) The KEGG database at GenomeNet. Nucleic Acids Res 30:42-46
8. Kosztin et al (2002) Mechanical force generation by G proteins. Proc Natl Acad Sci USA 99:3575-3580
9. Kanehisa M, Goto S, Hattori M et al (2006) From genomics to chemical genomics: New developments in KEGG. Nucleic Acids Res 34:D354-D357
10. Harper SJ, LoGrass PS (2001) Signalling for survival and death in neurones: The role of stress-activated kinases, JNK and p38. Cell Signals 13:299-310
11. Kanehisa M, Goto S, Kawashima S (2004) The KEGG resource for deciphering the genome. Nucleic Acids Res 32:D288-D280
12. Derynck R, Zhang YE (2003) Smad-dependent and Smad-independent pathways in TGF-beta family signaling. Nature 425:577-584
13. Takada I, Kato S (2005) PPARs targets genes. Nippon Rinsho 63:573-577
14. Aoki-Kinoshita Kanehisa (2007) Gene annotation and pathway mapping in KEGG. Methods Mol Biol 396:71-91
15. Kanehisa M, Araki M, Goto S et al (2008) KEGG for linking genome to life and the environment. Nucleic Acids Res 35:D480-484
16. Takahashi N et al (2005) The structures and functions of peroxisome proliferator-activated receptors (PPARs). Rinsho 63:557-564
17. Yamauchi T et al (2002) Adiponectin stimulates glucose utilization and fatty-acid oxidation by activating AMP-activated protein kinase. Nature Med 8:1288-1295
18. http://www.genome.ad.jp/kegg/pathway/hsa/hsa04610.html
19. Velasco-Velazquez MA et al (2003) Macrophage-Mycobacterium tuberculosis interactions: Role of complement receptor 3. Microb Pathog 35:125-131
20. Matsushita M et al (2000) Proteolytic activities of two types of mannose-binding lectin-associated serine protease. J Immunol 165:2637-2642
21. Norris LA (2003) Blood coagulation. Best Pract Res Clin Obstet Gynaecol 17:369-383
22. Siraganian RP (2003) Mast cell signal transduction from the high-affinity IgE Receptor. Curr Opin Immunol 15:639-646
23. Gilfillan AM, Tkaczyk C (2006) Integrated signaling pathways for mast-cell activation. Nat Rev Immunol 6:218-230
24. Chen I (2007) Monitoring athletes' physiological responses to endurance training with genome-wide expression data. Int J Sport Sci Eng 1:147-156