In situ ligation between peptides and silica nanoparticles for making peptide microarrays on polycarbonate

Bioconjugate Chemistry

Volumn 20, Issue 3, 2009, Pages 550-557

  Souplet, Vianney ^a   Desmet, Rémi ^a   Melnyk, Oleg ^a  

^a INSTITUT DE BIOLOGIE DE LILLE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

4,4' ISOPROPYLIDENEDIPHENOL; AMYLOID PRECURSOR PROTEIN; ANTIBODY; IMMUNOGLOBULIN G; MONOCLONAL ANTIBODY; MONOCLONAL ANTIBODY 6E10; NANOPARTICLE; POLYCARBONATE; SEMICARBAZIDE; SILICON DIOXIDE; UNCLASSIFIED DRUG; PEPTIDE; POLYCARBOXYLATE CEMENT;

ANIMAL TISSUE; ANTIBODY DETECTION; ARTICLE; CONTROLLED STUDY; ENZYME LINKED IMMUNOSORBENT ASSAY; FLUORESCENCE ANALYSIS; INCUBATION TIME; NONHUMAN; PEPTIDE SYNTHESIS; PROTEIN MICROARRAY; SENSITIVITY AND SPECIFICITY; SERUM; AMINO ACID SEQUENCE; ANIMAL; CHEMISTRY; EVALUATION STUDY; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; PROCEDURES;

AMINO ACID SEQUENCE; ANIMALS; ANTIBODIES; MOLECULAR SEQUENCE DATA; NANOPARTICLES; PEPTIDES; POLYCARBOXYLATE CEMENT; PROTEIN ARRAY ANALYSIS; SERUM; SILICON DIOXIDE;

EID: 63749120633     PISSN: 10431802     EISSN: None     Source Type: Journal    
DOI: 10.1021/bc800474g     Document Type: Article

References (48)

1. Templin, M. F., Stoll, D., Schrenk, M., Traub, P. C, Vohringer, C. F., and Joos, T. O. (2002) Protein microarray technology. Drug Discovery Today 7, 815-22.
2. Talapatra, A., Rouse, R., and Hardiman, G. (2002) Protein microarrays: challenges and promises. Pharmacogenomics 3, 527-36.
3. Ryan, T. E., and Patterson, S. D. (2002) Proteomics: drug target discovery on an industrial scale. Trends Biotechnol. 20, S45-51.
4. Robinson, W. H., DiGennaro, C, Hueber, W., Haab, B. B., Kamachi, M., Dean, E. J., Foumel, S., Fong, D., Genovese, M. C, de Vegvar, H. E., Skriner, K., Hirschberg, D. L., Morris, R. I., Muller, S., Pruijn, G. J., van Venrooij, W. J., Smolen, J. S., Brown, P. O., Steinman, L., and Utz, P. J. (2002) Autoantigen microarrays for multiplex characterization of autoantibody responses. Nat. Med. 8, 295-301.
5. Duburcq, X., Olivier, C, Malingue, F., Desmet, R., Bouzidi, A., Zhou, F., Auriault, C, Gras-Masse, H., and Melnyk, O. (2004) Peptide-protein microarrays for the simultaneous detection of pathogen infections. Bioconjugate Chem. 15, 307-16.
6. Duburcq, X., Olivier, C, Desmet, R., Halasa, M., Carion, O., Grandidier, B., Heim, T., Stievenard, D., Auriault, C, and Melnyk, O. (2004) Polypeptide semicarbazide glass slide microarrays: characterization and comparison with amine slides in serodetection studies. Bioconjugate Chem. 15, 317-25.
7. Mezzasoma, L., Bacarese-Hamilton, T., Di Cristina, M., Rossi, R., Bistoni, F., and Crisanti, A. (2002) Antigen microarrays for serodiagnosis of infectious diseases. Clin. Chem. 48, 121-30.
8. Petrik, J. (2001) Microarray technology: the future of blood testing? Vox Sang. 80, 1-11.
9. Ekins, R., Chu, F., and Biggart, E. (1990) Multispot, multi-analyte, immunoassay. Ann. Biol. Clin. (Paris) 48, 655-66.
10. Ekins, R. P., and Chu, F. W. (1991) Multianalyte microspot immunoassay--microanalytical "compact disk" of the future. Clin. Chem. 37, 1955-67.
11. Ekins, R. P. (1998) Ligand assays: from electrophoresis to miniaturized microarrays. Clin. Chem. 44, 2015-30.
12. Schaferling, M., and Nagl, S. (2006) Optical technologies for the read out and quality control of DNA and protein microarrays. Anal. Bioanal. Chem. 385, 500-17.
13. Ekins, R., Chu, F., and Micallef, J. (1989) High specific activity chemiluminescent and fluorescent markers: their potential application to high sensitivity and 'multi-analyte' immunoassays. J. Biolumin. Chemilumin. 4, 59-78.
14. Angenendt, P., Glokler, J., Sobek, J., Lehrach, H., and Cahill, D. J. (2003) Next generation of protein microarray support materials: evaluation for protein and antibody microarray applications. J. Chromatogr., Sect. A 1009, 97-104.
15. Yeo, D. S., Panicker, R. C, Tan, L. P., and Yao, S. Q. (2004) Strategies for immobilization of biomolecules in a microarray. Comb. Chem. High Throughput Screen 7, 213-21.
16. Yeo, D. S., Srinivasan, R., Chen, G. Y., and Yao, S. Q. (2004) Expanded utility of the native chemical ligation reaction. Chemistry 10, 4664-72.
17. Uttamchandani, M., Chen, G. Y., Lesaicherre, M. L., and Yao, S. Q. (2004) Site-specific peptide immobilization strategies for the rapid detection of kinase activity on microarrays. Methods Mol. Biol. 264, 191-204.
18. Falsey, J. R, Renil, M., Park, S., Li, S., and Lam, K. S. (2001) Peptide and small molecule microarray for high throughput cell adhesion and functional assays. Bioconjugate Chem. 12, 346-53.
19. Olivier, C, Hot, D., Huot, L., Ollivier, N., El-Mahdi, O., Gouyette, C, Huynh-Dinh, T., Gras-Masse, H., Lemoine, Y, and Melnyk, O. (2003) Alpha-oxo semicarbazone peptide or oligodeoxynucleotide microarrays. Bioconjugate Chem. 14, 430-9.
20. Melnyk, O., Duburcq, X., Olivier, C, Urbes, F., Auriault, C, and Gras-Masse, H. (2002) Peptide arrays for highly sensitive and specific antibody-binding fluorescence assays. Bioconjugate Chem. 13, 713-20.
21. Soellner, M. B., Dickson, K. A., Nilsson, B. L., and Raines, R. T. (2003) Site-specific protein immobilization by Staudinger ligation. J. Am. Chem. Soc. 125, 11790-1.
22. MacBeath, G., and Schreiber, S. L. (2000) Printing proteins as microarrays for high-throughput function determination. Science 289, 1760-3.
23. Zhu, H., Bilgin, M., Bangham, R, Hall, D., Casamayor, A., Bertone, P., Lan, N., Jansen, R., Bidlingmaier, S., Houfek, T., Mitchell, T., Miller, P., Dean, R. A., Gerstein, M., and Snyder, M. (2001) Global analysis of protein activities using proteome chips. Science 293, 2101-5.
24. Pritchard, D. J., Morgan, H., and Cooper, J. M. (1995) Patterning and regeneration of surfaces with antibodies. Anal. Chem. 67, 3605-7.
25. Delehanty, J. B., and Ligler, F. S. (2002) A microarray immunoassay for simultaneous detection of proteins and bacteria. Anal. Chem. 74, 5681-7.
26. Alexandre, I., Houbion, Y., Collet, J., Hamels, S., Demarteau, J., Gala, J. L., and Remacle, J. (2002) Compact disc with both numeric and genomic information as DNA microarray platform. Biotechniques 33 (435-6), 438-9.
27. La Clair, J. J., and Burkart, M. D. (2006) Geometry in digital molecular arrays. Org. Biomol. Chem. 4, 3052-5.
28. Morais, S., Carrascosa, J., Mira, D., Puchades, R., and Maquieira, A. (2007) Microimmunoanalysis on standard compact discs to determine low abundant compounds, Anal. Chem.
29. Ko, K. S., Najmabadi, P., La Clair, J. J., and Burkart, M. D. (2008) Affinity analyses on moldable optical polycarbonate. ChemBioChem 9, 201-5.
30. La Clair, J. J., and Burkart, M. D. (2003) Molecular screening on a compact disc. Org. Biomol. Chem. 1, 3244-9.
31. Soper, S. A., Hashimoto, M., Situma, C, Murphy, M. C, McCarley, R. L., Cheng, Y. W., and Barany, F. (2005) Fabrication of DNA microarrays onto polymer substrates using UV modification protocols with integration into microfluidic platforms for the sensing of low-abundant DNA point mutations. Methods 37, 103-13.
32. Banuls, M. J., Gonzalez-Pedro, V., Puchades, R., and Maquieira, A. (2007) PMMA isocyanate-modified digital discs as a support for oligonucleotide-based assays. Bioconjugate Chem. 18, 1408-14.
33. Banuls, M. J., Garcia-Pinon, F., Puchades, R., and Maquieira, A. (2008) Chemical derivatization of compact disc polycarbonate surfaces for SNPs detection. Bioconjugate Chem. 19, 665-72.
34. Carion, O., Souplet, V., Olivier, C, Maillet, C, Medard, N., El-Mahdi, O., Durand, J. O., and Melnyk, O. (2007) Chemical micropatterning of polycarbonate for site-specific peptide immobilization and biomolecular interactions. ChemBioChem 8, 315-322.
35. Field, J., Nikawa, J., Broek, D., MacDonald, B., Rodgers, L., Wilson, I. A., Lerner, R. A., and Wigler, M. (1988) Purification of a RAS-responsive adenylyl cyclase complex from Saccharo-myces cerevisiae by use of an epitope addition method. Mol. Cell. Biol. 8, 2159-65.
36. Brizzard, B. L., Chubet, R. G., and Vizard, D. L. (1994) Immunoaffinity purification of FLAG epitope-tagged bacterial alkaline phosphatase using a novel monoclonal antibody and peptide elution. Biotechniques 16, 730-5.
37. Geoghegan, K. F., and Stroh, J. G. (1992) Site-directed conjugation of nonpeptide groups to peptides and proteins via periodate oxidation of a 2-amino alcohol. Application to modification at N-terminal serine. Bioconjugate Chem. 3, 138-46.
38. Fields, G. B., and Noble, R. L. (1990) Solid phase peptide synthesis utilizing 9-fiuorenylmethoxycarbonyl amino acids. Int. J. Pept. Protein Res. 35, 161-214.
39. Melnyk, O., Fruchart, J. S., Grandjean, C, and Gras-Masse, H. (2001) Tartric acid-based linker for the solid-phase synthesis of C-terminal peptide alpha-oxo aldehydes. J. Org. Chem. 66, 4153-60.
40. Melnyk, O., Fehrentz, J. A., Martinez, J., and Gras-Masse, H. (2000) Functionalization of peptides and proteins by aldehyde or keto groups. Biopolymers 55, 165-86.
41. Fruchart, J.-S., Gras-Masse, H., and Melnyk, O. (1999) A new linker for the synthesis of C-terminal peptide [alpha]-oxo-aldehydes. Tetrahedron Lett. 40, 6225-6228.
42. Melnyk, O., Olivier, C, Ollivier, N., Lemoine, Y., Hot, D., Huot, L., and Gouyette, C. (2005) Preparation of alpha-Oxo semicarbazone oligonucleotide microarrays, In Current Protocol Nucleic Acid Chemistry, Chapter 12, Unit 12 6.
43. Ida, N., Hartmann, T., Pantel, J., Schroder, J., Zerfass, R., Forstl, H., Sandbrink, R., Masters, C. L., and Beyreuther, K. (1996) Analysis of heterogeneous A4 peptides in human cerebrospinal fluid and blood by a newly developed sensitive Western blot assay. J. Biol. Chem. 271, 22908-14.
44. Wilquet, V., and De Strooper, B. (2004) Amyloid-beta precursor protein processing in neurodegeneration. Curr. Opin. Neurobiol. 14, 582-8.
45. Schenk, D., Barbour, R, Dunn, W., Gordon, G., Grajeda, H., Guido, T., Hu, K., Huang, J., Johnson-Wood, K., Khan, K, Kholodenko, D., Lee, M., Liao, Z., Lieberburg, I., Motter, R, Mutter, L, Soriano, F., Shopp, G., Vasquez, N., Vandevert, G, Walker, S., Wogulis, M., Yednock, T., Games, D., and Seubert, P. (1999) Immunization with amyloid-beta attenuates Alzheimer-disease-like pathology in the PDAPP mouse. Nature 400, 173-7.
46. Tabira, T. (2007) Vaccination therapy for Alzheimer's disease. Brain Nerve 59, 375-82.
47. Woodhouse, A., Dickson, T. C, and Vickers, J. C. (2007) Vaccination strategies for Alzheimer's disease: A new hope? Drugs Aging 24, 107-19.
48. Garcia, J. M., Far, S., Diesis, E., and Melnyk, O. (2006) Determination of glyoxylyl-peptide concentration using oxime chemistry and RP-HPLC analysis. J. Pept. Sci. 12, 734-8.