메뉴 건너뛰기




Volumn 149, Issue 2, 2009, Pages 258-265

Comparison of gene expression responses to hypoxia in viviparous (Xiphophorus) and oviparous (Oryzias) fishes using a medaka microarray

Author keywords

Gene expression; Hypoxia; Medaka; Microarray; Xiphophorus

Indexed keywords

COMPLEMENTARY DNA; DOUBLE STRANDED DNA; GENE PRODUCT; MESSENGER RNA; RNA;

EID: 63749118892     PISSN: 15320456     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cbpc.2008.11.005     Document Type: Article
Times cited : (40)

References (46)
  • 2
    • 0028071564 scopus 로고
    • The SWISS-PROT protein sequence data bank: current status
    • Bairoch A., and Boeckmann B. The SWISS-PROT protein sequence data bank: current status. Nucleic Acids Res. 22 (1994) 3578-3580
    • (1994) Nucleic Acids Res. , vol.22 , pp. 3578-3580
    • Bairoch, A.1    Boeckmann, B.2
  • 3
    • 0033863518 scopus 로고    scopus 로고
    • DNA microarray technology and application
    • Bednar M. DNA microarray technology and application. Med. Sci. Monit. 6 (2000) 796-800
    • (2000) Med. Sci. Monit. , vol.6 , pp. 796-800
    • Bednar, M.1
  • 4
    • 0021080037 scopus 로고
    • The functional, comparative and evolutionary anatomy of myosins
    • Bennett H.S. The functional, comparative and evolutionary anatomy of myosins. Acta Biol. Hung. 34 (1983) 1-23
    • (1983) Acta Biol. Hung. , vol.34 , pp. 1-23
    • Bennett, H.S.1
  • 6
    • 33845868501 scopus 로고    scopus 로고
    • Evolution of the Rho family of ras-like GTPases in eudaryotes
    • Boureux A., Vignal E., Raure S., and Fort P. Evolution of the Rho family of ras-like GTPases in eudaryotes. Mol. Biol. Evol. 24 (2007) 203-216
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 203-216
    • Boureux, A.1    Vignal, E.2    Raure, S.3    Fort, P.4
  • 7
    • 34247175312 scopus 로고    scopus 로고
    • GTP-binding proteins of the Rho/Rac family: regulation, effectors and functions in vivo
    • Bustelo X.R., Sauzeau V., and Berenjeno I.M. GTP-binding proteins of the Rho/Rac family: regulation, effectors and functions in vivo. Bioessays 29 (2007) 356-370
    • (2007) Bioessays , vol.29 , pp. 356-370
    • Bustelo, X.R.1    Sauzeau, V.2    Berenjeno, I.M.3
  • 8
    • 27644587818 scopus 로고    scopus 로고
    • Response of the Pacific oyster Crassostrea gigas to hypoxia exposure under experimental conditions
    • David E., Tanguy A., Pichavant K., and Moraga D. Response of the Pacific oyster Crassostrea gigas to hypoxia exposure under experimental conditions. FEBS J. 272 (2005) 5635-5652
    • (2005) FEBS J. , vol.272 , pp. 5635-5652
    • David, E.1    Tanguy, A.2    Pichavant, K.3    Moraga, D.4
  • 10
    • 3242707576 scopus 로고    scopus 로고
    • Evaluation of a linear amplification method for small samples used on high-density oligonucleotide microarray analysis
    • Dumur C.I., Garrett C.T., Archer K.J., Nasim S., Wilkinson D.S., and Ferreira-Gonzalez A. Evaluation of a linear amplification method for small samples used on high-density oligonucleotide microarray analysis. Anal. Biochem. 331 (2004) 314-321
    • (2004) Anal. Biochem. , vol.331 , pp. 314-321
    • Dumur, C.I.1    Garrett, C.T.2    Archer, K.J.3    Nasim, S.4    Wilkinson, D.S.5    Ferreira-Gonzalez, A.6
  • 12
    • 0036007438 scopus 로고    scopus 로고
    • Microarrays in ecology and evolution: a preview
    • Gibson G. Microarrays in ecology and evolution: a preview. Mol. Ecol. 11 (2002) 17-24
    • (2002) Mol. Ecol. , vol.11 , pp. 17-24
    • Gibson, G.1
  • 13
    • 0035852651 scopus 로고    scopus 로고
    • Hypoxia-induced gene expression profiling in the euryoxic fish Gillichthys mirabilis
    • Gracey A.Y., Troll J.V., and Somero G.N. Hypoxia-induced gene expression profiling in the euryoxic fish Gillichthys mirabilis. Proc. Natl. Acad. Sci. U. S. A. 98 (2001) 1993-1998
    • (2001) Proc. Natl. Acad. Sci. U. S. A. , vol.98 , pp. 1993-1998
    • Gracey, A.Y.1    Troll, J.V.2    Somero, G.N.3
  • 15
    • 2142801574 scopus 로고    scopus 로고
    • A potential integrated water quality strategy for the Mississippi River Basin and the Gulf of Mexico
    • Greenhalgh S., and Faeth P. A potential integrated water quality strategy for the Mississippi River Basin and the Gulf of Mexico. Sci. World J. 1 Suppl 2 (2001) 976-983
    • (2001) Sci. World J. , vol.1 , Issue.SUPPL. 2 , pp. 976-983
    • Greenhalgh, S.1    Faeth, P.2
  • 16
    • 5444242571 scopus 로고    scopus 로고
    • Microarrays in ecological research: a case study of a cDNA microarray for plant-herbivore interactions
    • Held M., Gase K., and Baldwin I.T. Microarrays in ecological research: a case study of a cDNA microarray for plant-herbivore interactions. BMC Ecol. 4 (2004) 13
    • (2004) BMC Ecol. , vol.4 , pp. 13
    • Held, M.1    Gase, K.2    Baldwin, I.T.3
  • 18
    • 0035977490 scopus 로고    scopus 로고
    • Differential expression of adipose- and heart-type fatty acid binding proteins in hibernating ground squirrels
    • Hittel D., and Storey K.B. Differential expression of adipose- and heart-type fatty acid binding proteins in hibernating ground squirrels. Biochim. Biophys. Acta 1522 (2001) 238-243
    • (2001) Biochim. Biophys. Acta , vol.1522 , pp. 238-243
    • Hittel, D.1    Storey, K.B.2
  • 19
    • 0031238739 scopus 로고    scopus 로고
    • Oxygen sensing and signal transduction in metabolic defense against hypoxia: lessons from vertebrate facultative anaerobes
    • Hochachka P.W., Land S.C., and Buck L.T. Oxygen sensing and signal transduction in metabolic defense against hypoxia: lessons from vertebrate facultative anaerobes. Comp. Biochem. Physiol. A Physiol. 118 (1997) 23-29
    • (1997) Comp. Biochem. Physiol. A Physiol. , vol.118 , pp. 23-29
    • Hochachka, P.W.1    Land, S.C.2    Buck, L.T.3
  • 20
    • 0036384940 scopus 로고    scopus 로고
    • Differential gene expression in the brain of channel catfish (Ictalurus punctatus) in response to cold acclimation
    • Ju Z., Dunham R.A., and Liu Z. Differential gene expression in the brain of channel catfish (Ictalurus punctatus) in response to cold acclimation. Mol. Genet. Genomics 268 (2002) 87-95
    • (2002) Mol. Genet. Genomics , vol.268 , pp. 87-95
    • Ju, Z.1    Dunham, R.A.2    Liu, Z.3
  • 21
    • 33846799231 scopus 로고    scopus 로고
    • Multiple tissue gene expression analyses in Japanese medaka (Oryzias latipes) exposed to hypoxia
    • Ju Z., Wells M.C., Heater S.J., and Walter R.B. Multiple tissue gene expression analyses in Japanese medaka (Oryzias latipes) exposed to hypoxia. Comp. Biochem. Physiol. C Toxicol. Pharmacol. 145 (2007) 134-144
    • (2007) Comp. Biochem. Physiol. C Toxicol. Pharmacol. , vol.145 , pp. 134-144
    • Ju, Z.1    Wells, M.C.2    Heater, S.J.3    Walter, R.B.4
  • 22
    • 33846813734 scopus 로고    scopus 로고
    • DNA microarray technology in toxicogenomics of aquatic models: methods and applications
    • Ju Z., Wells M.C., and Walter R.B. DNA microarray technology in toxicogenomics of aquatic models: methods and applications. Comp. Biochem. Physiol. C Toxicol. Pharmacol. 145 (2007) 5-14
    • (2007) Comp. Biochem. Physiol. C Toxicol. Pharmacol. , vol.145 , pp. 5-14
    • Ju, Z.1    Wells, M.C.2    Walter, R.B.3
  • 23
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto encyclopedia of genes and genomes
    • Kanehisa M., and Goto S. KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 28 (2000) 27-30
    • (2000) Nucleic Acids Res. , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 24
    • 0012925267 scopus 로고    scopus 로고
    • Use of platyfishes and swordtails in biological research
    • Kazianis S., and Walter R.B. Use of platyfishes and swordtails in biological research. Lab. Anim. (NY) 31 (2002) 46-52
    • (2002) Lab. Anim. (NY) , vol.31 , pp. 46-52
    • Kazianis, S.1    Walter, R.B.2
  • 26
    • 1242338879 scopus 로고    scopus 로고
    • Evaluation of procedures for amplification of small-size samples for hybridization on microarrays
    • Klur S., Toy K., Williams M.P., and Certa U. Evaluation of procedures for amplification of small-size samples for hybridization on microarrays. Genomics 83 (2004) 508-517
    • (2004) Genomics , vol.83 , pp. 508-517
    • Klur, S.1    Toy, K.2    Williams, M.P.3    Certa, U.4
  • 28
    • 34547590719 scopus 로고    scopus 로고
    • ESTpass: a web-based server for processing and annotating expressed sequence tag (EST) sequences
    • Lee B., Hong T., Byun S.J., Woo T., and Choi Y.J. ESTpass: a web-based server for processing and annotating expressed sequence tag (EST) sequences. Nucleic Acids Res. 35 (2007) W159-W162
    • (2007) Nucleic Acids Res. , vol.35
    • Lee, B.1    Hong, T.2    Byun, S.J.3    Woo, T.4    Choi, Y.J.5
  • 29
    • 33745276255 scopus 로고    scopus 로고
    • Effects of different environmental oxygen levels on free radical processes in fish
    • Lushchak V.I., and Bagnyukova T.V. Effects of different environmental oxygen levels on free radical processes in fish. Comp. Biochem. Physiol. B Biochem. Mol. Biol. 144 (2006) 283-289
    • (2006) Comp. Biochem. Physiol. B Biochem. Mol. Biol. , vol.144 , pp. 283-289
    • Lushchak, V.I.1    Bagnyukova, T.V.2
  • 32
    • 4644324293 scopus 로고    scopus 로고
    • Hypoxic survival strategies in two fishes: extreme anoxia tolerance in the North European crucian carp and natural hypoxic preconditioning in a coral-reef shark
    • Nilsson G.E., and Renshaw G.M. Hypoxic survival strategies in two fishes: extreme anoxia tolerance in the North European crucian carp and natural hypoxic preconditioning in a coral-reef shark. J. Exp. Biol. 207 (2004) 3131-3139
    • (2004) J. Exp. Biol. , vol.207 , pp. 3131-3139
    • Nilsson, G.E.1    Renshaw, G.M.2
  • 33
    • 3543043120 scopus 로고    scopus 로고
    • Charlotte Harbor initiative: assessing the ecological health of southwest Florida's Charlotte Harbor estuary
    • Pierce R.H., Wetzel D.L., and Estevez E.D. Charlotte Harbor initiative: assessing the ecological health of southwest Florida's Charlotte Harbor estuary. Ecotoxicology 13 (2004) 275-284
    • (2004) Ecotoxicology , vol.13 , pp. 275-284
    • Pierce, R.H.1    Wetzel, D.L.2    Estevez, E.D.3
  • 34
    • 15744404453 scopus 로고    scopus 로고
    • Metabolic changes in Japanese medaka (Oryzias latipes) during embryogenesis and hypoxia as determined by in vivo 31P NMR
    • Pincetich C.A., Viant M.R., Hinton D.E., and Tjeerdema R.S. Metabolic changes in Japanese medaka (Oryzias latipes) during embryogenesis and hypoxia as determined by in vivo 31P NMR. Comp. Biochem. Physiol. C Toxicol. Pharmacol. 140 (2005) 103-113
    • (2005) Comp. Biochem. Physiol. C Toxicol. Pharmacol. , vol.140 , pp. 103-113
    • Pincetich, C.A.1    Viant, M.R.2    Hinton, D.E.3    Tjeerdema, R.S.4
  • 35
    • 0024487811 scopus 로고
    • Comparative studies of the anatomy of the brain in three species of Agnatha: Petromyzon marinus, Lampetra fluviatilis and Lampetra planeri
    • Platel R., and Vesselkin N.P. Comparative studies of the anatomy of the brain in three species of Agnatha: Petromyzon marinus, Lampetra fluviatilis and Lampetra planeri. J. Hirnforsch 30 (1989) 23-32
    • (1989) J. Hirnforsch , vol.30 , pp. 23-32
    • Platel, R.1    Vesselkin, N.P.2
  • 36
    • 9444231671 scopus 로고    scopus 로고
    • Biologically meaningful expression profiling across species using heterologous hybridization to a cDNA microarray
    • Renn S.C., Aubin-Horth N., and Hofmann H.A. Biologically meaningful expression profiling across species using heterologous hybridization to a cDNA microarray. BMC Genomics 5 (2004) 42
    • (2004) BMC Genomics , vol.5 , pp. 42
    • Renn, S.C.1    Aubin-Horth, N.2    Hofmann, H.A.3
  • 38
    • 4544332184 scopus 로고    scopus 로고
    • Aquatic hypoxia is a teratogen and affects fish embryonic development
    • Shang E.H., and Wu R.S. Aquatic hypoxia is a teratogen and affects fish embryonic development. Environ. Sci. Technol. 38 (2004) 4763-4767
    • (2004) Environ. Sci. Technol. , vol.38 , pp. 4763-4767
    • Shang, E.H.1    Wu, R.S.2
  • 39
    • 1542377310 scopus 로고    scopus 로고
    • Application of DNA microarray to toxicological research
    • Shioda T. Application of DNA microarray to toxicological research. J. Environ. Pathol. Toxicol. Oncol. 23 (2004) 13-31
    • (2004) J. Environ. Pathol. Toxicol. Oncol. , vol.23 , pp. 13-31
    • Shioda, T.1
  • 40
    • 0141814610 scopus 로고    scopus 로고
    • Gene expression profile of zebrafish exposed to hypoxia during development
    • Ton C., Stamatiou D., and Liew C.C. Gene expression profile of zebrafish exposed to hypoxia during development. Physiol. Genomics 13 (2003) 97-106
    • (2003) Physiol. Genomics , vol.13 , pp. 97-106
    • Ton, C.1    Stamatiou, D.2    Liew, C.C.3
  • 41
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • Tusher V.G., Tibshirani R., and Chu G. Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl. Acad. Sci. U. S. A. 98 (2001) 5116-5121
    • (2001) Proc. Natl. Acad. Sci. U. S. A. , vol.98 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 43
    • 0035224708 scopus 로고    scopus 로고
    • Xiphophorus interspecies hybrids as genetic models of induced neoplasia
    • Walter R.B., and Kazianis S. Xiphophorus interspecies hybrids as genetic models of induced neoplasia. Ilar J. 42 (2001) 299-321
    • (2001) Ilar J. , vol.42 , pp. 299-321
    • Walter, R.B.1    Kazianis, S.2
  • 45
    • 33749223143 scopus 로고    scopus 로고
    • The Kyoto encyclopedia of genes and genomes-KEGG
    • Wixon J., and Kell D. The Kyoto encyclopedia of genes and genomes-KEGG. Yeast 17 (2000) 48-55
    • (2000) Yeast , vol.17 , pp. 48-55
    • Wixon, J.1    Kell, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.