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Volumn 37, Issue 3, 2009, Pages 931-938

A novel chair-type G-quadruplex formed by a Bombyx mori telomeric sequence

Author keywords

[No Author keywords available]

Indexed keywords

GUANINE; GUANINE QUADRUPLEX; POTASSIUM ION; THYMINE; URIDINE;

EID: 63349088711     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkn990     Document Type: Article
Times cited : (58)

References (44)
  • 1
    • 38049030699 scopus 로고    scopus 로고
    • Human telomere, oncogenic promoter and 5′-UTR G-quadruplexes: Diverse higher order DNA and RNA targets for cancer therapeutics
    • Patel,D.J., Phan,A.T. and Kuryavyi,V. (2007) Human telomere, oncogenic promoter and 5′-UTR G-quadruplexes: Diverse higher order DNA and RNA targets for cancer therapeutics. Nucleic Acids Res., 35, 7429-7455.
    • (2007) Nucleic Acids Res , vol.35 , pp. 7429-7455
    • Patel, D.J.1    Phan, A.T.2    Kuryavyi, V.3
  • 4
    • 1042268168 scopus 로고    scopus 로고
    • G-quartets 40 years later: From 5′-GMP to molecular biology and supramolecular chemistry
    • Davis,J.T. (2004) G-quartets 40 years later: From 5′-GMP to molecular biology and supramolecular chemistry. Angew. Chem. Int. Ed. Engl., 43, 668-698.
    • (2004) Angew. Chem. Int. Ed. Engl , vol.43 , pp. 668-698
    • Davis, J.T.1
  • 5
    • 0035018021 scopus 로고    scopus 로고
    • G-quadruplex DNA structures - variations on a theme
    • Simonsson,T. (2001) G-quadruplex DNA structures - variations on a theme. Biol. Chem., 382, 621-628.
    • (2001) Biol. Chem , vol.382 , pp. 621-628
    • Simonsson, T.1
  • 7
    • 0031727943 scopus 로고    scopus 로고
    • G-quadruplex DNA: A target for drug design
    • Mergny,J.L. and Hélène,C. (1998) G-quadruplex DNA: A target for drug design. Nat. Med., 4, 1366-1367.
    • (1998) Nat. Med , vol.4 , pp. 1366-1367
    • Mergny, J.L.1    Hélène, C.2
  • 9
    • 0037142071 scopus 로고    scopus 로고
    • Crystal structure of parallel quadruplexes from human telomeric DNA
    • Parkinson,G.N., Lee,M.P.H. and Neidle,S. (2002) Crystal structure of parallel quadruplexes from human telomeric DNA. Nature, 417, 876-880.
    • (2002) Nature , vol.417 , pp. 876-880
    • Parkinson, G.N.1    Lee, M.P.H.2    Neidle, S.3
  • 11
    • 33646943863 scopus 로고    scopus 로고
    • Human telomeric sequence forms a hybrid-type intramolecular G-quadruplex structure with mixed parallel/antiparallel strands in potassium solution
    • Ambrus,A., Chen,D., Dai,J., Bialis,T., Jones,R.A. and Yang,D. (2006) Human telomeric sequence forms a hybrid-type intramolecular G-quadruplex structure with mixed parallel/antiparallel strands in potassium solution. Nucleic Acids Res., 34, 2723-2735.
    • (2006) Nucleic Acids Res , vol.34 , pp. 2723-2735
    • Ambrus, A.1    Chen, D.2    Dai, J.3    Bialis, T.4    Jones, R.A.5    Yang, D.6
  • 14
    • 0029980523 scopus 로고    scopus 로고
    • Reconciliation of the X-ray and NMR structures of the thrombin-binding aptamer d(GGTTGGTGTGGTTGG)
    • Kelly,J.A., Feigon,J. and Yeates,T.O. (1996) Reconciliation of the X-ray and NMR structures of the thrombin-binding aptamer d(GGTTGGTGTGGTTGG). J. Mol. Biol., 256, 417-422.
    • (1996) J. Mol. Biol , vol.256 , pp. 417-422
    • Kelly, J.A.1    Feigon, J.2    Yeates, T.O.3
  • 17
    • 0032709102 scopus 로고    scopus 로고
    • TTAGG telomeric repeats in chromosomes of some insects and other arthropods
    • Sahara,K., Marec,F. and Traut,W. (1999) TTAGG telomeric repeats in chromosomes of some insects and other arthropods. Chromosome Res., 7, 449-460.
    • (1999) Chromosome Res , vol.7 , pp. 449-460
    • Sahara, K.1    Marec, F.2    Traut, W.3
  • 18
    • 33750533396 scopus 로고    scopus 로고
    • Canonical TTAGG-repeat telomeres and telomerase in the honey bee, Apis mellifera
    • Robertson,H.M. and Gordon,K.H. (2006) Canonical TTAGG-repeat telomeres and telomerase in the honey bee, Apis mellifera. Genome Res., 16, 1345-1351.
    • (2006) Genome Res , vol.16 , pp. 1345-1351
    • Robertson, H.M.1    Gordon, K.H.2
  • 19
    • 0014725117 scopus 로고
    • Oligonucleotide interactions. III. Circular dichroism studies of the conformation of deoxyoligonucleotides
    • Cantor,C.R., Warshaw,M.M. and Shapiro,H. (1970) Oligonucleotide interactions. III. Circular dichroism studies of the conformation of deoxyoligonucleotides. Biopolymers, 9, 1059-1077.
    • (1970) Biopolymers , vol.9 , pp. 1059-1077
    • Cantor, C.R.1    Warshaw, M.M.2    Shapiro, H.3
  • 20
    • 0032508468 scopus 로고    scopus 로고
    • Following G-quartet formation by UV-spectroscopy
    • Mergny,J.L., Phan,A.T. and Lacroix,L. (1998) Following G-quartet formation by UV-spectroscopy. FEBS Lett., 435, 74-78.
    • (1998) FEBS Lett , vol.435 , pp. 74-78
    • Mergny, J.L.1    Phan, A.T.2    Lacroix, L.3
  • 21
    • 27144440078 scopus 로고    scopus 로고
    • Thermal difference spectra: A specific signature for nucleic acid structures
    • Mergny,J.L., Li,J., Lacroix,L., Amrane,S. and Chaires,J.B. (2005) Thermal difference spectra: A specific signature for nucleic acid structures. Nucleic Acids Res., 33, e138.
    • (2005) Nucleic Acids Res , vol.33
    • Mergny, J.L.1    Li, J.2    Lacroix, L.3    Amrane, S.4    Chaires, J.B.5
  • 22
    • 0037138634 scopus 로고    scopus 로고
    • 13C isotope-labeling approach to unambiguous NMR spectral assignments in nucleic acids
    • 13C isotope-labeling approach to unambiguous NMR spectral assignments in nucleic acids. J. Am. Chem. Soc., 124, 1160-1161.
    • (2002) J. Am. Chem. Soc , vol.124 , pp. 1160-1161
    • Phan, A.T.1    Patel, D.J.2
  • 23
    • 0034090950 scopus 로고    scopus 로고
    • 13C J-couplings and the through-bond correlation of imino and non-exchangeable protons in unlabeled DNA
    • 13C J-couplings and the through-bond correlation of imino and non-exchangeable protons in unlabeled DNA. J. Biomol. NMR, 16, 175-178.
    • (2000) J. Biomol. NMR , vol.16 , pp. 175-178
    • Phan, A.T.1
  • 24
    • 0034924446 scopus 로고    scopus 로고
    • Investigation of unusual DNA motifs
    • Phan,A.T., Guéron,M. and Leroy,J.L. (2001) Investigation of unusual DNA motifs. Methods Enzymol., 338, 341-371.
    • (2001) Methods Enzymol , vol.338 , pp. 341-371
    • Phan, A.T.1    Guéron, M.2    Leroy, J.L.3
  • 25
    • 0345098322 scopus 로고    scopus 로고
    • Two-repeat human telomeric d(TA GGGTTAGGGT) sequence forms interconverting parallel and antiparallel G-quadruplexes in solution: Distinct topologies, thermodynamic properties, and folding/unfolding kinetics
    • Phan,A.T. and Patel,D.J. (2003) Two-repeat human telomeric d(TA GGGTTAGGGT) sequence forms interconverting parallel and antiparallel G-quadruplexes in solution: Distinct topologies, thermodynamic properties, and folding/unfolding kinetics. J. Am. Chem. Soc., 125, 15021-15027.
    • (2003) J. Am. Chem. Soc , vol.125 , pp. 15021-15027
    • Phan, A.T.1    Patel, D.J.2
  • 28
    • 0034716937 scopus 로고    scopus 로고
    • The solution structure and internal motions of a fragment of the cytidine-rich strand of the human telomere
    • Phan,A.T., Guéron,M. and Leroy,J.L. (2000) The solution structure and internal motions of a fragment of the cytidine-rich strand of the human telomere. J. Mol. Biol., 299, 123-144.
    • (2000) J. Mol. Biol , vol.299 , pp. 123-144
    • Phan, A.T.1    Guéron, M.2    Leroy, J.L.3
  • 29
    • 0027172294 scopus 로고
    • The structure of alpha-thrombin inhibited by a 15-mer single-stranded DNA aptamer
    • Padmanabhan,K., Padmanabhan,K.P., Ferrara,J.D., Sadler,J.E. and Tulinsky,A. (1993) The structure of alpha-thrombin inhibited by a 15-mer single-stranded DNA aptamer. J. Biol. Chem., 268, 17651-17654.
    • (1993) J. Biol. Chem , vol.268 , pp. 17651-17654
    • Padmanabhan, K.1    Padmanabhan, K.P.2    Ferrara, J.D.3    Sadler, J.E.4    Tulinsky, A.5
  • 30
    • 33646359481 scopus 로고    scopus 로고
    • Predictive modelling of topology and loop variations in dimeric DNA quadruplex structures
    • Hazel,P., Parkinson,G.N. and Neidle,S. (2006) Predictive modelling of topology and loop variations in dimeric DNA quadruplex structures. Nucleic Acids Res., 34, 2117-2127.
    • (2006) Nucleic Acids Res , vol.34 , pp. 2117-2127
    • Hazel, P.1    Parkinson, G.N.2    Neidle, S.3
  • 31
    • 1842578967 scopus 로고    scopus 로고
    • Two-repeat Tetrahymena telomeric d(TGGGGTTGGGGT) sequence interconverts between asymmetric dimeric G-quadruplexes in solution
    • Phan,A.T., Modi,Y.S. and Patel,D.J. (2004) Two-repeat Tetrahymena telomeric d(TGGGGTTGGGGT) sequence interconverts between asymmetric dimeric G-quadruplexes in solution. J. Mol. Biol., 338, 93-102.
    • (2004) J. Mol. Biol , vol.338 , pp. 93-102
    • Phan, A.T.1    Modi, Y.S.2    Patel, D.J.3
  • 32
    • 0030993474 scopus 로고    scopus 로고
    • Bombyx mori single repeat telomeric DNA sequence forms a G-quadruplex capped by base triads
    • Kettani,A., Bouaziz,S., Wang,W., Jones,R.A. and Patel,D.J. (1997) Bombyx mori single repeat telomeric DNA sequence forms a G-quadruplex capped by base triads. Nat. Struct. Biol., 4, 382-389.
    • (1997) Nat. Struct. Biol , vol.4 , pp. 382-389
    • Kettani, A.1    Bouaziz, S.2    Wang, W.3    Jones, R.A.4    Patel, D.J.5
  • 33
    • 33947359032 scopus 로고    scopus 로고
    • Effect of G-tract length on the topology and stability of intramolecular DNA quadruplexes
    • Rachwal,P.A., Brown,T. and Fox,K.R. (2007) Effect of G-tract length on the topology and stability of intramolecular DNA quadruplexes. Biochemistry, 46, 3036-3044.
    • (2007) Biochemistry , vol.46 , pp. 3036-3044
    • Rachwal, P.A.1    Brown, T.2    Fox, K.R.3
  • 35
    • 33747860882 scopus 로고    scopus 로고
    • QGRS Mapper: A web-based server for predicting G-quadruplexes in nucleotide sequences
    • Kikin,O., D'Antonio,L. and Bagga,P.S. (2006) QGRS Mapper: A web-based server for predicting G-quadruplexes in nucleotide sequences. Nucleic Acids Res., 34, W676-W682.
    • (2006) Nucleic Acids Res , vol.34
    • Kikin, O.1    D'Antonio, L.2    Bagga, P.S.3
  • 37
    • 20144369806 scopus 로고    scopus 로고
    • Highly prevalent putative quadruplex sequence motifs in human DNA
    • Todd,A.K., Johnston,M. and Neidle,S. (2005) Highly prevalent putative quadruplex sequence motifs in human DNA. Nucleic Acids Res., 33 2901-2907.
    • (2005) Nucleic Acids Res , vol.33 , pp. 2901-2907
    • Todd, A.K.1    Johnston, M.2    Neidle, S.3
  • 38
    • 20144364292 scopus 로고    scopus 로고
    • Prevalence of quadruplexes in the human genome
    • Huppert,J.L. and Balasubramanian,S. (2005) Prevalence of quadruplexes in the human genome. Nucleic Acids Res., 33, 2908-2916.
    • (2005) Nucleic Acids Res , vol.33 , pp. 2908-2916
    • Huppert, J.L.1    Balasubramanian, S.2
  • 39
    • 33748519569 scopus 로고    scopus 로고
    • Gene function correlates with potential for G4 DNA formation in the human genome
    • Eddy,J. and Maizels,N. (2006) Gene function correlates with potential for G4 DNA formation in the human genome. Nucleic Acids Res., 34, 3887-3896.
    • (2006) Nucleic Acids Res , vol.34 , pp. 3887-3896
    • Eddy, J.1    Maizels, N.2
  • 40
    • 33747819216 scopus 로고    scopus 로고
    • Quadfinder: Server for identification and analysis of quadruplex-forming motifs in nucleotide sequences
    • Scaria,V., Hariharan,M., Arora,A. and Maiti,S. (2006) Quadfinder: Server for identification and analysis of quadruplex-forming motifs in nucleotide sequences. Nucleic Acids Res., 34, W683-W685.
    • (2006) Nucleic Acids Res , vol.34
    • Scaria, V.1    Hariharan, M.2    Arora, A.3    Maiti, S.4
  • 41
    • 38349095525 scopus 로고    scopus 로고
    • Genomic distribution and functional analyses of potential G-quadruplex-forming sequences in Saccharomyces cerevisiae
    • Hershman,S.G., Chen,Q., Lee,J.Y., Kozak,M.L., Yue,P., Wang,L.S. and Johnson,F.B. (2008) Genomic distribution and functional analyses of potential G-quadruplex-forming sequences in Saccharomyces cerevisiae. Nucleic Acids Res., 36, 144-156.
    • (2008) Nucleic Acids Res , vol.36 , pp. 144-156
    • Hershman, S.G.1    Chen, Q.2    Lee, J.Y.3    Kozak, M.L.4    Yue, P.5    Wang, L.S.6    Johnson, F.B.7
  • 42
    • 38549157087 scopus 로고    scopus 로고
    • Greglist: A database listing potential G-quadruplex regulated genes
    • Zhang,R., Lin,Y. and Zhang,C.T. (2008) Greglist: A database listing potential G-quadruplex regulated genes. Nucleic Acids Res., 36 D372-D376.
    • (2008) Nucleic Acids Res , vol.36
    • Zhang, R.1    Lin, Y.2    Zhang, C.T.3
  • 43
    • 38549092075 scopus 로고    scopus 로고
    • QuadBase: Genome-wide database of G4 DNA - occurrence and conservation in human, chimpanzee, mouse and rat promoters and 146 microbes
    • Yadav,V.K., Abraham,J.K., Mani,P., Kulshrestha,R. and Chowdhury,S. (2008) QuadBase: Genome-wide database of G4 DNA - occurrence and conservation in human, chimpanzee, mouse and rat promoters and 146 microbes. Nucleic Acids Res., 36, D381-D385.
    • (2008) Nucleic Acids Res , vol.36
    • Yadav, V.K.1    Abraham, J.K.2    Mani, P.3    Kulshrestha, R.4    Chowdhury, S.5
  • 44
    • 39049170386 scopus 로고    scopus 로고
    • Genome-wide analysis reveals regulatory role of G4 DNA in gene transcription
    • Du,Z., Zhao,Y. and Li,N. (2008) Genome-wide analysis reveals regulatory role of G4 DNA in gene transcription. Genome Res., 18, 233-241.
    • (2008) Genome Res , vol.18 , pp. 233-241
    • Du, Z.1    Zhao, Y.2    Li, N.3


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