Kitasatospora saccharophila sp. nov. and Kitasatospora kazusanensis sp. nov., isolated from soil and transfer of Streptomyces atroaurantiacus to the genus Kitasatospora as Kitasatospora atroaurantiaca comb. nov

Journal of General and Applied Microbiology

Volumn 55, Issue 1, 2009, Pages 19-26

  Li, Bing ^a   Furihata, Keiko ^a   Kudo, Takuji ^b   Yokota, Akira ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b RIKEN BIORESOURCE CENTER   (Japan)

Author keywords

Kitasatospora atroaurantiaca comb. nov.; Kitasatospora kazusanensis sp. nov.; Kitasatospora saccharophila sp. nov.

Indexed keywords

DIAMINO ACID; DIAMINOPIMELIC ACID; FATTY ACID; GALACTOSE; MANNOSE; PEPTIDOGLYCAN; QUINONE DERIVATIVE; RIBOSE; RNA 16S;

ACTINOBACTERIA; ARTICLE; BACTERIAL CELL WALL; BACTERIAL STRAIN; BACTERIUM ISOLATE; CHEMOTAXONOMY; CONTROLLED STUDY; DNA DNA HYBRIDIZATION; GENUS; KITASATOSPORA KAZUSANENSIS; KITASATOSPORA SACCHAROPHILA; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; RNA SEQUENCE; SOIL MICROFLORA; STREPTOMYCES ATROAURANTICUS; TAXONOMY; TYPE STRAIN;

BACTERIAL TYPING TECHNIQUES; DNA, BACTERIAL; DNA, RIBOSOMAL; JAPAN; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SPECIES SPECIFICITY; STREPTOMYCES; STREPTOMYCETACEAE;

KITASATOSPORA; KITASATOSPORA MEDIOCIDICA; KITASATOSPORA SETAE; STREPTOMYCES;

EID: 63249113026     PISSN: 00221260     EISSN: 13498037     Source Type: Journal    
DOI: 10.2323/jgam.55.19     Document Type: Article

References (32)

1. Brosius, J., Palmer, M. L., Kennedy, P. J., and Noller, H. F. (1978) Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc. Natl. Acad. Sci. USA, 75, 4801-4805.
2. Cowan, S. T. and Steel, K. J. (1965) Manual for the Identification of Medical Bacteria, Cambridge University Press, London.
3. Ezaki, T., Hashimoto, Y., and Yabuuchi, E. (1989) Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int. J. Syst. Bacteriol., 39, 224-229.
4. Felsenstein, J. (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution, 39, 783-791.
5. Groth, I., Rodriguez, C., Schütze, B., Schmitz, P., Leistner, E., and Goodfellow, M. (2004) Five novel Kitasatospora species from soil: Kitasatospora arboriphila sp. nov., K. gansuensis sp. nov., K. nipponensis sp, nov., K. paranensis sp. nov. and K. terrestris sp. nov. Int. J. Syst. Evol. Microbiol., 54, 2121-2129.
6. Groth. I., Schütze, B., Boettcher, T., Pullen, C. B., Rodriguez, C., Leistner, E., and Goodfellow, M. (2003) Kitasatospora putterlickiae sp. nov., isolated from rhizosphere soil, transfer of Streptomyces kifunensis to the genus Kitasatospora as Kitasatospora kifunensis comb. nov., and emended description of Streptomyces aureofaciens Duggar 1948. Int. J. Syst. Evol. Microbiol., 53, 2033-2040.
7. Harper, J. J. and Davis, G. H. G. (1979) Two-dimensional thin-layer chromatography for amino acid analysis of bacterial cell walls. Int J Syst.. Bacteriol., 29, 56-58.
8. Hayakawa, M. and Nonomura, H. (1987) Humic acid-vitamin agar, a new medium for the selective isolation of soil actinomycetes. J. Ferment Technol., 65, 501-509.
9. Kimura, M. (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol., 16, 111-120.
10. Komagata, K. and Suzuki, K. (1987) Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol., 19, 161-207.
11. Kumar, S., Tamura, K., and Nei, M. (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform., 5, 150-163.
12. Kusukawa, N., Uemori, T., Asada, K., and Kato, I. (1990) Rapid and reliable protocol for direct sequencing of material amplified by the polymerase chain reaction. BioTechniques, 9, 66-72.
13. Lányi, B. (1987) Classical and rapid identification methods for medically important bacteria. Methods Microbiol., 19, 1-67.
14. Liu, Z., Rodríguez, C., Wang, L., Cui, Q., Huang, Y., Quintana, E. T., and Goodfellow, M. (2005) Kitasatospora viridis sp. nov., a novel actinomycete from soil. Int. J. Syst. Evol. Microbiol., 55, 707-711.
15. Marmur, J. (1961) A procedure for the isolation of deoxyribonucleic acid from microorganisms. J. Moi. Biol., 3, 208-218.
16. Mayilraj, S., Krishnamurthi, S., Saha, P., and Saini, H. S. (2006) Kitasatospora sampliensis sp. nov., a novel actinobacterium isolated from soil of a sugar-cane field in India. Int. J. Syst. Evol. Microbiol., 56, 519-522.
17. Mesbah, M., Premachandran, U., and Whitman, W. B. (1989) Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int. J. Syst. Bacteriol., 39, 159-167.
18. Minnikin, D. E., Hutchinson, I. G., Caldicott, A. B., and Goodfellow, M. (1980) Thin-layer chromatography of methanolysates of mycolic acid containing bacteria. J. Chromatogr., 188, 221-233.
19. Nakagaito, Y., Shimazu, A., Yokota, A., and Hasegawa, T. (1992) Proposal of Streptomyces atroaurantiacus sp. nov. and Streptomyces kifunensis sp. nov. and transferring Kitasatosporia cystarginea Kusakabe and Isono to the genus Streptomyces as Streptomyces cystargineus comb. nov. J. Gen. Appl. Microbiol., 38, 627-633.
20. Omura, S., Iwai, Y, Takahashi, Y., Kojima, K., Otoguro, K., and Oiwa, R. (1981) Type of diaminopimelic acid different in aerial and vegetative mycelia of setamycin-producing actinomycete KM-6054. J. Antibiot., 34, 1633-1634.
21. Omura, S., Takahashi, Y., Iwai, Y., and Tanaka. H. (1982) Kitasatosporia, a new genus of the order Actinomycetales. J. Antibiot., 35, 1013-1019.
22. Saitou, N. and Nei, M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4, 406-425.
23. Shirling, E. B. and Gottlieb, D. (1966) Methods for characterization of Streptomyces species. Int. J. Syst. Bacteriol., 16, 313-340.
24. Takahashi, Y., Iwai, Y., and Omura, S. (1984) Two new species of the genus Kitasatosporia, Kitasatosporia phosalacinea sp. nov. and Kitasatosporia griseola sp. nov. J. Gen. Appl. Microbiol., 30, 377-387.
25. Taylor, H. D., Knoche, L., and Granville, W. C. (editors) (1958) Color Harmony Manual, 4th ed., Container Corporation of America, Chicago.
26. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F., and Higgins, D. G. (1997) The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res., 25, 4876-4882.
27. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E., Stackebrandt, E.,Starr, M. P, and Trüper, H. G. (1987) International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int. J. Syst. Bacteriol., 37, 463-464.
28. Wellington, E. M. H., Stackebrandt, E., Sanders, D., Wolstrup, J., and Jorgensen, N. O. G. (1992) Taxonomic status of Kitasatosporia, and proposed unification with Streptomyces on the basis of phenotypic and 16S rRNA analysis and emendation of Streptomyces Waksman and Henrici 1943, 339AL. Int. J. Syst. Bacteriol., 42, 156-160.
29. Xie, C.-H. and Yokota, A. (2003) Phylogenetic analyses of Lampropedia hyalina based on the 16S rRNA gene sequence. J. Gen. Appl. Microbiol., 49, 345-349.
30. Yokota, A. and Takashima, M. (2001) Cell wall. In Classification and Identification of Microorganisms, ed. by Suzuki, K., Hiraishi, A., and Yokota, A., Springer-Verlag, Tokyo, pp. 97-117 (in Japanese).
31. Yokota, A., Tamura, T., Nishii, T., and Hasegawa, T. (1993) Kine-ococcus aurantiacus gen. nov., sp. nov., a new aerobic gram-positive, motile coccus with meso-diaminopimelic acid and arabinogalactan in the cell wall. Int. J. Syst. Bacteriol., 43, 52-57.
32. Zhang, Z., Wang, Y., and Ruan, J. (1997) A proposal to revive the genus Kitasatospora (Omura, Takahashi, Iwai, and Tanaka 1982). Int. J. Syst. Bacteriol., 47, 1048-1054.