Protein extraction methods compatible with proteomic analysis for the cotton seedling

Crop Science

Volumn 49, Issue 2, 2009, Pages 395-402

  Xie, Chengjian ^a   Wang, De ^a   Yang, Xingyong ^a  

^a SOUTHWEST UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

GOSSYPIUM HIRSUTUM;

EID: 63149114267     PISSN: 0011183X     EISSN: None     Source Type: Journal    
DOI: 10.2135/cropsci2008.06.0367     Document Type: Article

References (33)

1. Bodzon-Kulakowska, A., A. Bierczynska-Krzysik, T. Dylag, A. Drabik, P. Suder, M. Noga, J. Jarzebinska, and J. Silberring. 2007. Methods for samples preparation in proteomic research. J. Chromatogr. B 849:1-31.
2. Bradford, M.M. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72:248-254.
3. Candiano, G., M. Bruschi, L. Musante, L. Santucci, G.M. Ghiggeri, B. Carnemolla, P. Orecchia, L. Zardi, and P.G. Righetti. 2004. Blue silver: A very sensitive colloidal Coomassie G-250 staining for proteome analysis. Electrophoresis 25:1327-1333.
4. Carpentier, S.C., E. Witters, K. Laukens, P. Deckers, R. Swennen, and B. Panis. 2005. Preparation of protein extracts from recalcitrant plant tissues: An evaluation of different methods for two-dimensional gel electrophoresis analysis. Proteomics 5:2497-2507.
5. Damerval, C., D.D. Vienne, M. Zivy, and H. Thiellement. 1986. Technical improvements in two-dimensional electrophoresis increase the level of genetic variation detected in wheat-seedling proteins. Electrophoresis 7:52-54.
6. Geddes, J., F. Eudes, A. Laroche, and L.B. Selinger. 2008. Differential expression of proteins in response to the interaction between the pathogen Fusarium graminearum and its host, Hordeum vulgare. Proteomics 8:545-554.
7. Gómez-Vidal, S., M. Tena, L.V. Lopez-Llorca, and J. Salinas. 2008. Protein extraction from Phoenix dactylifera L. leaves, a recalcitrant material, for two-dimensional electrophoresis. Electrophoresis 29:448-456.
8. Görg, A., C. Obermaier, G. Boguth, A. Harder, B. Scheibe, R. Wildgruber, and W. Weiss. 2000. The current state of two-dimensional electrophoresis with immobilized pH gradients. Electrophoresis 21:1037-1053.
9. Görg, A., W. Weiss, and M.J. Dunn. 2004. Current two-dimensional electrophoresis technology for proteomics. Proteomics 4:3665-3685.
10. Hochholdinger, F., M. Sauer, D. Dembinsky, N. Hoecker, N. Muthreich, M. Saleem, and Y. Liu. 2006. Proteomic dissection of plant development. Proteomics 6:4076-4083.
11. Huang, B., L.G. Jin, and J.Y. Liu. 2008. Identification and characterization of the novel gene GhDBP2 encoding a DRE-binding protein from cotton (Gossypium hirsutum). J. Plant Physiol. 165:214-223.
12. Hurkman, W.J., and C.K. Tanaka. 1986. Solubilization of plant membrane proteins for analysis by two-dimensional gel electrophoresis. Plant Physiol. 81:802-806.
13. Isaacson, T., C.M.B. Damasceno, R.S. Saravanan, Y. He, C. Catala, M. Saladie, and J.K.C. Rose. 2006. Sample extraction techniques for enhanced proteomic analysis of plant tissues. Nat. Protocols 1:769-774.
14. Jorrin, J.V., A.M. Maldonado, and M.A. Castillejo. 2007. Plant proteome analysis: A 2006 update. Proteomics 7:2947-2962.
15. Kim, S.T., S.K. Cho, Y.S. Jang, and K.Y. Kang. 2001. Two-dimensional electrophoretic analysis of rice proteins by polyethylene glycol fractionation for protein arrays. Electrophoresis 22:2103-2109.
16. Laemmli, U.K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680-685.
17. Laukens, K., P. Deckers, E. Esmans, H. Van Onckelen, and E. Witters. 2004. Construction of a two-dimensional gel electrophoresis protein database for the Nicotiana tabacum cv. Bright Yellow-2 cell suspension culture. Proteomics 4:720-727.
18. Mijnsbrugge, K.V., H. Meyermans, M. Van Montagu, G. Bauw, and W. Boerjan. 2000. Wood formation in poplar: Identification, characterization, and seasonal variation of xylem proteins. Planta 210:589-598.
19. Nandakumar, M.P., J. Shen, B. Raman, and M.R. Marten. 2003. Solubilization of trichloroacetic acid (TCA) precipitated microbial proteins via NaOH for two-dimensional electrophoresis. J. Proteome Res. 2:89-93.
20. O'Farrell, P.H. 1975. High resolution two-dimensional electrophoresis of proteins. J. Biol. Chem. 250:4007-4021.
21. Qin, Y.M., and Y.X. Zhu. 2007. A brief summary of major advances in cotton functional genomics and molecular breeding studies in China. Chin. Sci. Bull. 52:3174-3178.
22. Qureshi, M.I., S. Qadir, and L. Zolla. 2007. Proteomics-based dissection of stress-responsive pathways in plants. J. Plant Physiol. 164:1239-1260.
23. Rabilloud, T., C. Adessi, A. Giraudel, and J. Lunardi. 1997. Improvement of the solubilization of proteins in two-dimensional electrophoresis with immobilized pH gradients. Electrophoresis 18:307-316.
24. Saravanan, R.S., and J.K.C. Rose. 2004. A critical evaluation of sample extraction techniques for enhanced proteomic analysis of recalcitrant plant tissues. Proteomics 4:2522-2532.
25. Schägger, H. 2006. Tricine-SDS-PAGE. Nat. Protocols 1:16-22.
26. Vincent, D., M.D. Wheatley, and G.R. Cramer. 2006. Optimization of protein extraction and solubilization for mature grape berry clusters. Electrophoresis 27:1853-1865.
27. Wang, W., R. Vignani, M. Scali, and M. Cresti. 2006. A universal and rapid protocol for protein extraction from recalcitrant plant tissues for proteomic analysis. Electrophoresis 27:2782-2786.
28. Wang, W., M. Scali, R. Vignani, A. Spadafora, E. Sensi, S. Mazzuca, and M. Cresti. 2003. Protein extraction for two-dimensional electrophoresis from olive leaf, a plant tissue containing high levels of interfering compounds. Electrophoresis 24:2369-2375.
29. Wang, W., R. Vignani, M. Scali, E. Sensi, P. Tiberi, and M. Cresti. 2004. Removal of lipid contaminants by organic solvents from oilseed protein extract prior to electrophoresis. Anal. Biochem. 329:139-141.
30. Wang, X.C., X.F. Li, X. Deng, H.P. Han, W.L. Shi, and Y.X. Li. 2007. A protein extraction method compatible with proteomic analysis for the euhalophyte Salicornia europaea. Electrophoresis 28:3976-3987.
31. Xie, H., S.L. Pan, S.F. Liu, K. Ye, and K.K. Huo. 2007. A novel method of protein extraction from perennial Bupleurum root for 2-DE. Electrophoresis 28:871-875.
32. Yao, Y., Y.W. Yang, and J.Y. Liu. 2006. An efficient protein preparation for proteomic analysis of developing cotton fibers by 2-DE. Electrophoresis 27:4559-4569.
33. Zhou, W., F. Eudes, and A. Laroche. 2006. Identification of differentially regulated proteins in response to a compatible interaction between the pathogen Fusarium graminearum and its host, Triticum aestivum. Proteomics 6:4599-4609.