-
1
-
-
1042288931
-
Multi-stability in monotone input/output systems
-
March
-
D. Angeli and E. D. Sontag, "Multi-stability in monotone input/output systems," Systems and Control Letters, vol. 51, no. 3-4, pp. 185-202, March 2004.
-
(2004)
Systems and Control Letters
, vol.51
, Issue.3-4
, pp. 185-202
-
-
Angeli, D.1
Sontag, E.D.2
-
2
-
-
0033552613
-
Regulation of p53 stability
-
M. Ashcroft and K. H. Vousden, "Regulation of p53 stability," Oncogene, vol. 18, pp. 7637-7643, 1999.
-
(1999)
Oncogene
, vol.18
, pp. 7637-7643
-
-
Ashcroft, M.1
Vousden, K.H.2
-
3
-
-
62949169927
-
Reachability algorithm for a class of biologically inspired piecewise-affine hybrid systems,
-
Master's thesis, University of California at Berkeley
-
A. Aswani, "Reachability algorithm for a class of biologically inspired piecewise-affine hybrid systems," Master's thesis, University of California at Berkeley, 2007.
-
(2007)
-
-
Aswani, A.1
-
4
-
-
38049162560
-
Reachability algorithm for biological piecewise-affine hybrid systems
-
A. Aswani and C. Tomlin, "Reachability algorithm for biological piecewise-affine hybrid systems," in HSCC, 2007, pp. 633-636.
-
(2007)
HSCC
, pp. 633-636
-
-
Aswani, A.1
Tomlin, C.2
-
5
-
-
13444269250
-
Computational techniques for analysis of genetic network dynamics
-
C. Belta, J. Esposito, J. Kim, and V. Kumar, "Computational techniques for analysis of genetic network dynamics," International Journal of Robotics Research, vol. 24, no. 2-3, 2005.
-
(2005)
International Journal of Robotics Research
, vol.24
, Issue.2-3
-
-
Belta, C.1
Esposito, J.2
Kim, J.3
Kumar, V.4
-
6
-
-
84949433135
-
Verification of polyhedral-invariant hybrid automata using polygonal flow pipe approximations
-
HSCC, F. W. Vaandrager and J. H. van Schuppen, Eds, Springer
-
A. Chutinan and B. H. Krogh, "Verification of polyhedral-invariant hybrid automata using polygonal flow pipe approximations," in HSCC, ser. Lecture Notes in Computer Science, F. W. Vaandrager and J. H. van Schuppen, Eds., vol. 1569. Springer, 1999, pp. 76-90.
-
(1999)
ser. Lecture Notes in Computer Science
, vol.1569
, pp. 76-90
-
-
Chutinan, A.1
Krogh, B.H.2
-
7
-
-
1242333310
-
Qualitative simulation of genetic regulatory networks using piecewise-linear models
-
Mar
-
H. de Jong, J.-L. Gouzé, C. Hernandez, M. Page, T. Sari, and J. Geiselmann, "Qualitative simulation of genetic regulatory networks using piecewise-linear models," Bulletin of Mathematical Biology, vol. 66, no. 2, pp. 301-340, Mar. 2004.
-
(2004)
Bulletin of Mathematical Biology
, vol.66
, Issue.2
, pp. 301-340
-
-
de Jong, H.1
Gouzé, J.-L.2
Hernandez, C.3
Page, M.4
Sari, T.5
Geiselmann, J.6
-
8
-
-
34447505900
-
A tunable genetic switch based on RNAi and repressor proteins for regulating gene expression in mammalian cells
-
T. Deans, C. Cantor, and J. Collins, "A tunable genetic switch based on RNAi and repressor proteins for regulating gene expression in mammalian cells," Cell, vol. 130, pp. 363-372, 2007.
-
(2007)
Cell
, vol.130
, pp. 363-372
-
-
Deans, T.1
Cantor, C.2
Collins, J.3
-
10
-
-
0345824731
-
p53-independent functions of MDM2
-
G. Ganguli and B. Wasylyk, "p53-independent functions of MDM2," Molecular Cancer Research, vol. 1, pp. 1027-1035, 2003.
-
(2003)
Molecular Cancer Research
, vol.1
, pp. 1027-1035
-
-
Ganguli, G.1
Wasylyk, B.2
-
11
-
-
14344265954
-
Symbolic reachable set computation of piecewise affine hybrid automata and its application to biological modelling: Delta-Notch protein signalling
-
Jun
-
R. Ghosh and C. Tomlin, "Symbolic reachable set computation of piecewise affine hybrid automata and its application to biological modelling: Delta-Notch protein signalling," Systems Biology, vol. 1, no. 1, pp. 170-183, Jun. 2005.
-
(2005)
Systems Biology
, vol.1
, Issue.1
, pp. 170-183
-
-
Ghosh, R.1
Tomlin, C.2
-
12
-
-
33749553474
-
Combinatorial and topological methods in nonlinear chemical kinetics
-
L. Glass, "Combinatorial and topological methods in nonlinear chemical kinetics," J. Chem. Phys, vol. 63, no. 4, pp. 1325-1335, 1975.
-
(1975)
J. Chem. Phys
, vol.63
, Issue.4
, pp. 1325-1335
-
-
Glass, L.1
-
14
-
-
0036938728
-
A class of piecewise linear differential equations arising in biological models
-
J.-L. Gouzé and T. Sari, "A class of piecewise linear differential equations arising in biological models," Dynamical Systems, vol. 17, no. 4, pp. 299-316, 2002.
-
(2002)
Dynamical Systems
, vol.17
, Issue.4
, pp. 299-316
-
-
Gouzé, J.-L.1
Sari, T.2
-
15
-
-
18344377030
-
The p53 pathway: Positive and negative feedback loops
-
S. L. Harris and A. J. Levine, "The p53 pathway: positive and negative feedback loops," Oncogene, vol. 24, pp. 2899-2908, 2005.
-
(2005)
Oncogene
, vol.24
, pp. 2899-2908
-
-
Harris, S.L.1
Levine, A.J.2
-
16
-
-
33745815315
-
Stability and convergence in strongly monotone dynamical systems
-
M. W. Hirsch, "Stability and convergence in strongly monotone dynamical systems," Journal für die reine und angewandte Mathematik, vol. 383, pp. 1-53, 1988.
-
(1988)
Journal für die reine und angewandte Mathematik
, vol.383
, pp. 1-53
-
-
Hirsch, M.W.1
-
17
-
-
0013560711
-
A graph theoretical approach to monotonicity with respect to initial conditions
-
X. Liu and D. Siegal, Eds. CRC
-
H. Kunze and D. Siegel, "A graph theoretical approach to monotonicity with respect to initial conditions," in Comparison Methods and Stability Theory, X. Liu and D. Siegal, Eds. CRC, 1994.
-
(1994)
Comparison Methods and Stability Theory
-
-
Kunze, H.1
Siegel, D.2
-
18
-
-
1842378642
-
ii 250 and is required for MDM2 regulation of the Cyclin A promoter
-
ii 250 and is required for MDM2 regulation of the Cyclin A promoter," The Journal of Biological Chemistry, vol. 272, no. 49, pp. 30651-30661, 1997.
-
(1997)
The Journal of Biological Chemistry
, vol.272
, Issue.49
, pp. 30651-30661
-
-
Léveillard, T.1
Wasylyk, B.2
-
19
-
-
0033100636
-
Controllers for reachability specifications for hybrid systems
-
Mar
-
J. Lygeros, C. Tomlin, and S. Sastry, "Controllers for reachability specifications for hybrid systems," Automatica, vol. 35, no. 3, pp. 349- 370, Mar. 1999.
-
(1999)
Automatica
, vol.35
, Issue.3
, pp. 349-370
-
-
Lygeros, J.1
Tomlin, C.2
Sastry, S.3
-
20
-
-
0034814071
-
Control motifs for intracellular regulatory networks
-
C. V. Rao and A. P. Arkin, "Control motifs for intracellular regulatory networks," Annual Review of Biomedical Engineering, vol. 3, no. 1, pp. 391-419, 2001.
-
(2001)
Annual Review of Biomedical Engineering
, vol.3
, Issue.1
, pp. 391-419
-
-
Rao, C.V.1
Arkin, A.P.2
-
21
-
-
0034644506
-
Opposing effects of Ras on p53: Transcriptional activation of MDM2 and induction of pl9 ARF
-
S. Ries, C. Biederer, D. Woods, O. Shifman, S. Shirasawa, T. Sasazuki, M. McMahon, M. Oren, and F. McCormick, "Opposing effects of Ras on p53: Transcriptional activation of MDM2 and induction of pl9 ARF," Cell, vol. 103, pp. 321-330, 2000.
-
(2000)
Cell
, vol.103
, pp. 321-330
-
-
Ries, S.1
Biederer, C.2
Woods, D.3
Shifman, O.4
Shirasawa, S.5
Sasazuki, T.6
McMahon, M.7
Oren, M.8
McCormick, F.9
-
22
-
-
33645870422
-
Production of the antimalarial drug precursor artemisinic acid in engineered yeast
-
D.-K. Ro, E. M. Paradise, M. Ouellet, K. J. Fisher, K. L. Newman, J. M. Ndungu, K. A. Ho, R. A. Eachus, T. S. Ham, J. Kirby, M. C. Y. Chang, S. T. Withers, Y. Shiba, R. Sarpong, and J. D. Keasling, "Production of the antimalarial drug precursor artemisinic acid in engineered yeast," Nature, vol. 440, pp. 940-943, 2006.
-
(2006)
Nature
, vol.440
, pp. 940-943
-
-
Ro, D.-K.1
Paradise, E.M.2
Ouellet, M.3
Fisher, K.J.4
Newman, K.L.5
Ndungu, J.M.6
Ho, K.A.7
Eachus, R.A.8
Ham, T.S.9
Kirby, J.10
Chang, M.C.Y.11
Withers, S.T.12
Shiba, Y.13
Sarpong, R.14
Keasling, J.D.15
-
23
-
-
0029134903
-
Michaelis-menten mechanism reconsidered: Implications of fractal kinetics
-
M. A. Savageau, "Michaelis-menten mechanism reconsidered: Implications of fractal kinetics," Journal of Theoretical Biology, vol. 176, no. 1, pp. 115-124, 1995.
-
(1995)
Journal of Theoretical Biology
, vol.176
, Issue.1
, pp. 115-124
-
-
Savageau, M.A.1
-
24
-
-
0031853923
-
Development of fractal kinetic theory for enzyme-catalysed reactions and implications for the design of biochemical pathways
-
-, "Development of fractal kinetic theory for enzyme-catalysed reactions and implications for the design of biochemical pathways," Biosystems, vol. 47, no. 1-2, pp. 9-36, 1998.
-
(1998)
Biosystems
, vol.47
, Issue.1-2
, pp. 9-36
-
-
Savageau, M.A.1
-
25
-
-
0024916497
-
Qualitative dynamics of piecewise-linear differential equations: A discrete mapping approach
-
E. H. Snoussi, "Qualitative dynamics of piecewise-linear differential equations: A discrete mapping approach," Dynam. Stabil. Syst., vol. 4, no. 3-4, pp. 189-207, 1989.
-
(1989)
Dynam. Stabil. Syst
, vol.4
, Issue.3-4
, pp. 189-207
-
-
Snoussi, E.H.1
-
26
-
-
34548530660
-
Monotone and near-monotone biochemical networks
-
April
-
E. D. Sontag, "Monotone and near-monotone biochemical networks," Systems and Synthetic Biology, vol. 1, no. 2, pp. 59-87, April 2007.
-
(2007)
Systems and Synthetic Biology
, vol.1
, Issue.2
, pp. 59-87
-
-
Sontag, E.D.1
-
27
-
-
26244459242
-
Regulation of p53 translation and induction after DNA damage by ribosomal protein L26 and Nucleolin
-
M. Takagi, M. J. Absalon, K. G. McLure, and M. B. Kastan, "Regulation of p53 translation and induction after DNA damage by ribosomal protein L26 and Nucleolin," Cell, vol. 123, pp. 49-63, 2005.
-
(2005)
Cell
, vol.123
, pp. 49-63
-
-
Takagi, M.1
Absalon, M.J.2
McLure, K.G.3
Kastan, M.B.4
-
29
-
-
0000274688
-
A game theoretic approach to controller design for hybrid systems
-
Jul
-
C. Tomlin, J. Lygeros, and S. Sastry, "A game theoretic approach to controller design for hybrid systems," Proceedings of the IEEE, vol. 88, no. 7, pp. 949-969, Jul. 2000.
-
(2000)
Proceedings of the IEEE
, vol.88
, Issue.7
, pp. 949-969
-
-
Tomlin, C.1
Lygeros, J.2
Sastry, S.3
-
30
-
-
10744221485
-
In vivo activation of the p53 pathway by small-molecule antagonists of MDM2
-
L. T. Vassilev, B. T. Vu, B. Graves, D. Carvajal, F. Podlaski, Z. Filipovic, N. Kong, U. Kammlott, C. Lukacs, C. Klein, N. Fotouhi, and E. A. Liu, "In vivo activation of the p53 pathway by small-molecule antagonists of MDM2," Science, vol. 303, no. 5659, pp. 844-848, 2004.
-
(2004)
Science
, vol.303
, Issue.5659
, pp. 844-848
-
-
Vassilev, L.T.1
Vu, B.T.2
Graves, B.3
Carvajal, D.4
Podlaski, F.5
Filipovic, Z.6
Kong, N.7
Kammlott, U.8
Lukacs, C.9
Klein, C.10
Fotouhi, N.11
Liu, E.A.12
-
31
-
-
33845390022
-
A new kinetic model for heterogeneous (or spatially confined) enzymatic catalysis: Contributions from the fractal and jamming (overcrowding) effects
-
F. Xu and H. Ding, "A new kinetic model for heterogeneous (or spatially confined) enzymatic catalysis: Contributions from the fractal and jamming (overcrowding) effects," Applied Catalysis A: General, vol. 317, no. 1, pp. 70-81, 2007.
-
(2007)
Applied Catalysis A: General
, vol.317
, Issue.1
, pp. 70-81
-
-
Xu, F.1
Ding, H.2
|