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Volumn 83, Issue 6, 2009, Pages 2446-2459

Ecology, genetic diversity, and phylogeographic structure of andes virus in humans and rodents in Chile

Author keywords

[No Author keywords available]

Indexed keywords

ANDES VIRUS; ARTICLE; CHILE; GENETIC VARIABILITY; HANTAVIRUS; HANTAVIRUS PULMONARY SYNDROME; NUCLEOTIDE SEQUENCE; PHYLOGENY; PHYLOGEOGRAPHY; PRIORITY JOURNAL; VIRUS GENE; VIRUS MORPHOLOGY; ANIMAL; ANIMAL DISEASE; CLASSIFICATION; DNA SEQUENCE; EPIDEMIOLOGY; FEMALE; GENETIC RECOMBINATION; GENETICS; GEOGRAPHY; HUMAN; ISOLATION AND PURIFICATION; MALE; MOLECULAR GENETICS; RODENT; VIROLOGY; VIRUS INFECTION;

EID: 62749096814     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.01057-08     Document Type: Article
Times cited : (65)

References (66)
  • 1
    • 18744382506 scopus 로고    scopus 로고
    • ProtTest: Selection of best-fit models of protein evolution
    • Abascal, F., R. Zardoya, and D. Posada. 2005. ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21:2104-2105.
    • (2005) Bioinformatics , vol.21 , pp. 2104-2105
    • Abascal, F.1    Zardoya, R.2    Posada, D.3
  • 2
    • 0037329391 scopus 로고    scopus 로고
    • Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence
    • Alfaro, M. E., S. Zoller, and F. Lutzoni. 2003. Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence. Mol. Biol. Evol. 20:255-266.
    • (2003) Mol. Biol. Evol , vol.20 , pp. 255-266
    • Alfaro, M.E.1    Zoller, S.2    Lutzoni, F.3
  • 3
    • 0031810436 scopus 로고    scopus 로고
    • A bioclimatic classification of Chile: Woodland communities in the temperate zone
    • Amigo, J., and C. Ramirez. 1998. A bioclimatic classification of Chile: woodland communities in the temperate zone. Plant Ecol. 136:9-26.
    • (1998) Plant Ecol , vol.136 , pp. 9-26
    • Amigo, J.1    Ramirez, C.2
  • 4
    • 61749085323 scopus 로고    scopus 로고
    • The Mediterranean environment of central Chile
    • T. T. Veblen, A. R. Orme, and K. R. Young ed, Oxford University Press, Oxford, United Kingdom
    • Armesto, J. J., M. T. K. Arroyo, L. F. Hinojosa, T. T. Veblen, K. R. Young, and A. R. Orme. 2007. The Mediterranean environment of central Chile, p. 184-199. In T. T. Veblen, A. R. Orme, and K. R. Young (ed.), The physical geography of South America. Oxford University Press, Oxford, United Kingdom.
    • (2007) The physical geography of South America , pp. 184-199
    • Armesto, J.J.1    Arroyo, M.T.K.2    Hinojosa, L.F.3    Veblen, T.T.4    Young, K.R.5    Orme, A.R.6
  • 5
    • 0032900678 scopus 로고    scopus 로고
    • Median-joining networks for inferring intraspecific phylogenies
    • Bandelt, H. J., P. Forster, and A. Rohl. 1999. Median-joining networks for inferring intraspecific phylogenies. Mol. Biol. Evol. 16:37-48.
    • (1999) Mol. Biol. Evol , vol.16 , pp. 37-48
    • Bandelt, H.J.1    Forster, P.2    Rohl, A.3
  • 6
    • 31544457370 scopus 로고    scopus 로고
    • A virus reveals population structure and recent demographic history of its carnivore host
    • Biek, R., A. J. Drummond, and M. Poss. 2006. A virus reveals population structure and recent demographic history of its carnivore host. Science 311:538-541.
    • (2006) Science , vol.311 , pp. 538-541
    • Biek, R.1    Drummond, A.J.2    Poss, M.3
  • 7
    • 34249932299 scopus 로고    scopus 로고
    • A high-resolution genetic signature of demographic and spatial expansion in epizootic rabies virus
    • Biek, R., J. C. Henderson, L. A. Waller, C. E. Rupprecht, and L. A. Real. 2007. A high-resolution genetic signature of demographic and spatial expansion in epizootic rabies virus. Proc. Natl. Acad. Sci. USA 104:7993-7998.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 7993-7998
    • Biek, R.1    Henderson, J.C.2    Waller, L.A.3    Rupprecht, C.E.4    Real, L.A.5
  • 9
    • 0036317962 scopus 로고    scopus 로고
    • Shedding and intracage transmission of Sin Nombre hanta-virus in the deer mouse (Peromyscus maniculatus) model
    • Botten, J., K. Mirowsky, C. Y. Ye, K. Gottlieb, M. Saavedra, L. Ponce, and B. Hjelle. 2002. Shedding and intracage transmission of Sin Nombre hanta-virus in the deer mouse (Peromyscus maniculatus) model. J. Virol. 76:7587-7594.
    • (2002) J. Virol , vol.76 , pp. 7587-7594
    • Botten, J.1    Mirowsky, K.2    Ye, C.Y.3    Gottlieb, K.4    Saavedra, M.5    Ponce, L.6    Hjelle, B.7
  • 10
    • 38849093337 scopus 로고    scopus 로고
    • Phylogenetic and geographical relationships of hantavirus strains in eastern and western Paraguay
    • Chu, Y. K., B. Milligan, R. D. Owen, D. G. Goodin, and C. B. Jonsson. 2006. Phylogenetic and geographical relationships of hantavirus strains in eastern and western Paraguay. Am. J. Trop. Med. Hyg. 75:1127-1134.
    • (2006) Am. J. Trop. Med. Hyg , vol.75 , pp. 1127-1134
    • Chu, Y.K.1    Milligan, B.2    Owen, R.D.3    Goodin, D.G.4    Jonsson, C.B.5
  • 13
    • 33745628747 scopus 로고    scopus 로고
    • Phylogeography of the deer mouse (Peromyscus maniculatus) provides a predictive framework for research on hantaviruses
    • Dragoo, J. W., J. A. Lackey, K. E. Moore, E. P. Lessa, J. A. Cook, and T. L. Yates. 2006. Phylogeography of the deer mouse (Peromyscus maniculatus) provides a predictive framework for research on hantaviruses. J. Gen. Virol. 87:1997-2003.
    • (2006) J. Gen. Virol , vol.87 , pp. 1997-2003
    • Dragoo, J.W.1    Lackey, J.A.2    Moore, K.E.3    Lessa, E.P.4    Cook, J.A.5    Yates, T.L.6
  • 14
    • 0036021407 scopus 로고    scopus 로고
    • Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data
    • Drummond, A. J., G. K. Nicholls, A. G. Rodrigo, and W. Solomon. 2002. Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data. Genetics 161:1307-1320.
    • (2002) Genetics , vol.161 , pp. 1307-1320
    • Drummond, A.J.1    Nicholls, G.K.2    Rodrigo, A.G.3    Solomon, W.4
  • 15
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond, A. J., and A. Rambaut. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7:214.
    • (2007) BMC Evol. Biol , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 16
    • 17744381574 scopus 로고    scopus 로고
    • Bayesian coalescent inference of past population dynamics from molecular sequences
    • Drummond, A. J., A. Rambaut, B. Shapiro, and O. G. Pybus. 2005. Bayesian coalescent inference of past population dynamics from molecular sequences. Mol. Biol. Evol. 22:1185-1192.
    • (2005) Mol. Biol. Evol , vol.22 , pp. 1185-1192
    • Drummond, A.J.1    Rambaut, A.2    Shapiro, B.3    Pybus, O.G.4
  • 17
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies - an approach using the bootstrap
    • Felsenstein, J. 1985. Confidence limits on phylogenies - an approach using the bootstrap. Evolution 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 19
    • 0030821992 scopus 로고    scopus 로고
    • Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection
    • Fu, Y. X. 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147:915-925.
    • (1997) Genetics , vol.147 , pp. 915-925
    • Fu, Y.X.1
  • 20
    • 64249167922 scopus 로고    scopus 로고
    • Hall, T. A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41:95-98.
    • Hall, T. A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41:95-98.
  • 23
    • 0034530557 scopus 로고    scopus 로고
    • Modeling hantavirus maintenance and transmission in rodent communities
    • Hjelle, B., and T. Yates. 2001. Modeling hantavirus maintenance and transmission in rodent communities. Curr. Top. Microbiol. Immunol. 256:77-90.
    • (2001) Curr. Top. Microbiol. Immunol , vol.256 , pp. 77-90
    • Hjelle, B.1    Yates, T.2
  • 24
    • 1642362771 scopus 로고    scopus 로고
    • The phylogeography of human viruses
    • Holmes, E. C. 2004. The phylogeography of human viruses. Mol. Ecol. 13:745-756.
    • (2004) Mol. Ecol , vol.13 , pp. 745-756
    • Holmes, E.C.1
  • 25
    • 33748672063 scopus 로고    scopus 로고
    • Phylogenetic analysis reveals a correlation between the expansion of very virulent infectious bursal disease virus and reassortment of its genome segment B
    • Hon, C. C., T. Y. Lam, A. Drummond, A. Rambaut, Y. F. Lee, C. W. Yip, F. Zeng, P. Y. Lam, P. T. Ng, and F. C. Leung. 2006. Phylogenetic analysis reveals a correlation between the expansion of very virulent infectious bursal disease virus and reassortment of its genome segment B. J. Virol. 80:8503-8509.
    • (2006) J. Virol , vol.80 , pp. 8503-8509
    • Hon, C.C.1    Lam, T.Y.2    Drummond, A.3    Rambaut, A.4    Lee, Y.F.5    Yip, C.W.6    Zeng, F.7    Lam, P.Y.8    Ng, P.T.9    Leung, F.C.10
  • 26
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck, J. P., and F. Ronquist. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 29
    • 0037213608 scopus 로고    scopus 로고
    • Genetic interaction between distinct Dobrava hantavirus subtypes in Apodemus agrarius and A. flavicollis in nature
    • Klempa, B., H. A. Schmidt, R. Ulrich, S. Kaluz, M. Labuda, H. Meisel, B. Hjelle, and D. H. Kruger. 2003. Genetic interaction between distinct Dobrava hantavirus subtypes in Apodemus agrarius and A. flavicollis in nature. J. Virol. 77:804-809.
    • (2003) J. Virol , vol.77 , pp. 804-809
    • Klempa, B.1    Schmidt, H.A.2    Ulrich, R.3    Kaluz, S.4    Labuda, M.5    Meisel, H.6    Hjelle, B.7    Kruger, D.H.8
  • 30
    • 17744395033 scopus 로고    scopus 로고
    • Datamonkey: Rapid detection of selective pressure on individual sites of codon alignments
    • Kosakovsky Pond, S. L., and S. D. Frost. 2005. Datamonkey: rapid detection of selective pressure on individual sites of codon alignments. Bioinformatics 21:2531-2533.
    • (2005) Bioinformatics , vol.21 , pp. 2531-2533
    • Kosakovsky Pond, S.L.1    Frost, S.D.2
  • 32
    • 17744396121 scopus 로고    scopus 로고
    • Not so different after all: A comparison of methods for detecting amino acid sites under selection
    • Kosakovsky Pond, S. L., and S. D. Frost. 2005. Not so different after all: a comparison of methods for detecting amino acid sites under selection. Mol. Biol. Evol. 22:1208-1222.
    • (2005) Mol. Biol. Evol , vol.22 , pp. 1208-1222
    • Kosakovsky Pond, S.L.1    Frost, S.D.2
  • 36
    • 2542509266 scopus 로고    scopus 로고
    • Genetic identification of a new hantavirus causing severe pulmonary syndrome in Argentina
    • Lopez, N., P. Padula, C. Rossi, M. E. Lazaro, and M. T. Franze-Fernandez. 1996. Genetic identification of a new hantavirus causing severe pulmonary syndrome in Argentina. Virology 220:223-226.
    • (1996) Virology , vol.220 , pp. 223-226
    • Lopez, N.1    Padula, P.2    Rossi, C.3    Lazaro, M.E.4    Franze-Fernandez, M.T.5
  • 44
    • 0032519398 scopus 로고    scopus 로고
    • Hantavirus pulmonary syndrome outbreak in Argentina: Molecular evidence for person-to-person transmission of Andes virus
    • Padula, P. J., A. Edelstein, S. D. L. Miguel, N. M. Lopez, C. M. Rossi, and R. D. Rabinovich. 1998. Hantavirus pulmonary syndrome outbreak in Argentina: molecular evidence for person-to-person transmission of Andes virus. Virology 241:323-330.
    • (1998) Virology , vol.241 , pp. 323-330
    • Padula, P.J.1    Edelstein, A.2    Miguel, S.D.L.3    Lopez, N.M.4    Rossi, C.M.5    Rabinovich, R.D.6
  • 45
    • 4243140058 scopus 로고    scopus 로고
    • A phylogenetic mixture model for detecting pattern-heterogeneity in gene sequence or character-state data
    • Pagel, M., and A. Meade. 2004. A phylogenetic mixture model for detecting pattern-heterogeneity in gene sequence or character-state data. Syst. Biol. 53:571-581.
    • (2004) Syst. Biol , vol.53 , pp. 571-581
    • Pagel, M.1    Meade, A.2
  • 47
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • Posada, D., and K. A. Crandall. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 48
    • 58149487593 scopus 로고    scopus 로고
    • Pybus, O. G., E. Barnes, R. Taggart, P. Lemey, P. V. Markov, B. Rasachak, B. Syhavong, R. Phetsouvanah, I. Sheridan, I. S. Humphreys, L. Lu, P. N. Newton, and P. Klenerman. 29 October 2008. Genetic history of hepatitis C virus in East Asia. J. Virol. doi:10.1128/JVI.01501-08.
    • Pybus, O. G., E. Barnes, R. Taggart, P. Lemey, P. V. Markov, B. Rasachak, B. Syhavong, R. Phetsouvanah, I. Sheridan, I. S. Humphreys, L. Lu, P. N. Newton, and P. Klenerman. 29 October 2008. Genetic history of hepatitis C virus in East Asia. J. Virol. doi:10.1128/JVI.01501-08.
  • 49
    • 0036897674 scopus 로고    scopus 로고
    • Statistical properties of new neutrality tests against population growth
    • Ramos-Onsins, S. E., and J. Rozas. 2002. Statistical properties of new neutrality tests against population growth. Mol. Biol. Evol. 19:2092-2100.
    • (2002) Mol. Biol. Evol , vol.19 , pp. 2092-2100
    • Ramos-Onsins, S.E.1    Rozas, J.2
  • 52
    • 0347513220 scopus 로고    scopus 로고
    • DnaSP, DNA polymorphism analyses by the coalescent and other methods
    • Rozas, J., J. C. Sanchez-DelBarrio, X. Messeguer, and R. Rozas. 2003. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19:2496-2497.
    • (2003) Bioinformatics , vol.19 , pp. 2496-2497
    • Rozas, J.1    Sanchez-DelBarrio, J.C.2    Messeguer, X.3    Rozas, R.4
  • 53
    • 33749827106 scopus 로고    scopus 로고
    • Robust inference of positive selection from recombining coding sequences
    • Scheffler, K., D. P. Martin, and C. Seoighe. 2006. Robust inference of positive selection from recombining coding sequences. Bioinformatics 22: 2493-2499.
    • (2006) Bioinformatics , vol.22 , pp. 2493-2499
    • Scheffler, K.1    Martin, D.P.2    Seoighe, C.3
  • 54
    • 0031113395 scopus 로고    scopus 로고
    • Hantaviruses: A global disease problem
    • Schmaljohn, C., and B. Hjelle. 1997. Hantaviruses: a global disease problem. Emerg. Infect. Dis. 3:95-104.
    • (1997) Emerg. Infect. Dis , vol.3 , pp. 95-104
    • Schmaljohn, C.1    Hjelle, B.2
  • 55
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
    • Schmidt, H. A., K. Strimmer, M. Vingron, and A. von Haeseler. 2002. TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18:502-504.
    • (2002) Bioinformatics , vol.18 , pp. 502-504
    • Schmidt, H.A.1    Strimmer, K.2    Vingron, M.3    von Haeseler, A.4
  • 57
    • 0035163971 scopus 로고    scopus 로고
    • Molecular evolution of Puumala hantavirus
    • Sironen, T., A. Vaheri, and A. Plyusnin. 2001. Molecular evolution of Puumala hantavirus. J. Virol. 75:11803-11810.
    • (2001) J. Virol , vol.75 , pp. 11803-11810
    • Sironen, T.1    Vaheri, A.2    Plyusnin, A.3
  • 58
    • 1642293014 scopus 로고    scopus 로고
    • Biologia de roedores reservorios de hantavirus en Chile.
    • Spotorno, A., R. E. Palma, and J. P. Valladares. 2000. Biologia de roedores reservorios de hantavirus en Chile. Rev. Chilena Infectol. 17:197-210.
    • (2000) Rev. Chilena Infectol , vol.17 , pp. 197-210
    • Spotorno, A.1    Palma, R.E.2    Valladares, J.P.3
  • 60
    • 0024762773 scopus 로고
    • The effect of change in population size on DNA polymorphism
    • Tajima, F. 1989. The effect of change in population size on DNA polymorphism. Genetics 123:597-601.
    • (1989) Genetics , vol.123 , pp. 597-601
    • Tajima, F.1
  • 61
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura, K., and M. Nei. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10:512-526.
    • (1993) Mol. Biol. Evol , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 65
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang, Z. H. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13:555-556.
    • (1997) Comput. Appl. Biosci , vol.13 , pp. 555-556
    • Yang, Z.H.1


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