-
1
-
-
33644520519
-
The Genomes On Line Database (GOLD) v.2: A monitor of genome projects worldwide
-
(Database) 1347507 16381880 10.1093/nar/gkj145
-
Liolios K Tavernarakis N Hugenholtz P Kyrpides NC The Genomes On Line Database (GOLD) v.2: A monitor of genome projects worldwide Nucleic acids research 2006, 34(Database):D332-334. 1347507 16381880 10.1093/nar/ gkj145
-
(2006)
Nucleic Acids Research
-
-
Liolios, K.1
Tavernarakis, N.2
Hugenholtz, P.3
Kyrpides, N.C.4
-
2
-
-
22044443709
-
The Sequence Ontology: A tool for the unification of genome annotations
-
1175956 15892872 10.1186/gb-2005-6-5-r44
-
Eilbeck K Lewis SE Mungall CJ Yandell M Stein L Durbin R Ashburner M The Sequence Ontology: A tool for the unification of genome annotations Genome biology 2005, 6(5):R44. 1175956 15892872 10.1186/gb-2005-6-5-r44
-
(2005)
Genome Biology
, vol.6
, Issue.5
-
-
Eilbeck, K.1
Lewis, S.E.2
Mungall, C.J.3
Yandell, M.4
Stein, L.5
Durbin, R.6
Ashburner, M.7
-
4
-
-
34547844136
-
A Chado case study: An ontology-based modular schema for representing genome-associated biological information
-
10.1093/bioinformatics/btm189 17646315
-
Mungall CJ Emmert DB A Chado case study: An ontology-based modular schema for representing genome-associated biological information Bioinformatics (Oxford, England) 2007, 23(13):i337-346. 10.1093/ bioinformatics/btm189 17646315
-
(2007)
Bioinformatics (Oxford, England)
, vol.23
, Issue.13
-
-
Mungall, C.J.1
Emmert, D.B.2
-
6
-
-
38549143656
-
SmedGD: The Schmidtea mediterranea genome database
-
(Database) 2238899 17881371
-
Robb SM Ross E Alvarado AS SmedGD: The Schmidtea mediterranea genome database Nucleic Acids Res 36, (Database):D599-606. 2238899 17881371
-
Nucleic Acids Res
-
-
Robb, S.M.1
Ross, E.2
Alvarado, A.S.3
-
7
-
-
0002636459
-
Annotation of the Drosophila melanogaster euchromatic genome: A systematic review
-
RESEARCH0083 151185 12537572 10.1186/gb-2002-3-12-research0083
-
Misra S Crosby MA Mungall CJ Matthews BB Campbell KS Hradecky P Huang Y Kaminker JS Millburn GH Prochnik SE et al Annotation of the Drosophila melanogaster euchromatic genome: A systematic review Genome biology 2002, 3:12. RESEARCH0083 151185 12537572 10.1186/ gb-2002-3-12-research0083
-
(2002)
Genome Biology
, vol.3
, pp. 12
-
-
Misra, S.1
Crosby, M.A.2
Mungall, C.J.3
Matthews, B.B.4
Campbell, K.S.5
Hradecky, P.6
Huang, Y.7
Kaminker, J.S.8
Millburn, G.H.9
Prochnik, S.E.10
-
8
-
-
0034708444
-
Comparative genomics of the eukaryotes
-
10.1126/science.287.5461.2204 10731134
-
Rubin GM Yandell MD Wortman JR Gabor Miklos GL Nelson CR Hariharan IK Fortini ME Li PW Apweiler R et al Fleischmann W Comparative genomics of the eukaryotes Science 2000, 287(5461):2204-2215. 10.1126/ science.287.5461.2204 10731134
-
(2000)
Science
, vol.287
, Issue.5461
, pp. 2204-2215
-
-
Rubin, G.M.1
Yandell, M.D.2
Wortman, J.R.3
Gabor Miklos, G.L.4
Nelson, C.R.5
Hariharan, I.K.6
Fortini, M.E.7
Li, P.W.8
Apweiler, R.9
Fleischmann, W.10
-
9
-
-
0035895505
-
The sequence of the human genome
-
10.1126/science.1058040 11181995
-
Venter JC Adams MD Myers EW Li PW Mural RJ Sutton GG Smith HO Yandell M Evans CA Holt RA et al The sequence of the human genome Science 2001, 291(5507):1304-1351. 10.1126/science.1058040 11181995
-
(2001)
Science
, vol.291
, Issue.5507
, pp. 1304-1351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
Li, P.W.4
Mural, R.J.5
Sutton, G.G.6
Smith, H.O.7
Yandell, M.8
Evans, C.A.9
Holt, R.A.10
-
10
-
-
33645769791
-
Large-scale trends in the evolution of gene structures within 11 animal genomes
-
1386723 16518452 10.1371/journal.pcbi.0020015
-
Yandell M Mungall CJ Smith C Prochnik S Kaminker J Hartzell G Lewis S Rubin GM Large-scale trends in the evolution of gene structures within 11 animal genomes PLoS Comput Biol 2006, 2(3):e15. 1386723 16518452 10.1371/journal.pcbi.0020015
-
(2006)
PLoS Comput Biol
, vol.2
, Issue.3
-
-
Yandell, M.1
Mungall, C.J.2
Smith, C.3
Prochnik, S.4
Kaminker, J.5
Hartzell, G.6
Lewis, S.7
Rubin, G.M.8
-
11
-
-
0037246718
-
ASAP: The Alternative Splicing Annotation Project
-
165476 12519958 10.1093/nar/gkg029
-
Lee C Atanelov L Modrek B Xing Y ASAP: The Alternative Splicing Annotation Project Nucleic acids research 2003, 31(1):101-105. 165476 12519958 10.1093/nar/gkg029
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.1
, pp. 101-105
-
-
Lee, C.1
Atanelov, L.2
Modrek, B.3
Xing, Y.4
-
12
-
-
33646866597
-
Automated classification of alternative splicing and transcriptional initiation and construction of visual database of classified patterns
-
10.1093/bioinformatics/btl067 16500940
-
Nagasaki H Arita M Nishizawa T Suwa M Gotoh O Automated classification of alternative splicing and transcriptional initiation and construction of visual database of classified patterns Bioinformatics (Oxford, England) 2006, 22(10):1211-1216. 10.1093/bioinformatics/btl067 16500940
-
(2006)
Bioinformatics (Oxford, England)
, vol.22
, Issue.10
, pp. 1211-1216
-
-
Nagasaki, H.1
Arita, M.2
Nishizawa, T.3
Suwa, M.4
Gotoh, O.5
-
13
-
-
0030585734
-
Evaluation of gene structure prediction programs
-
10.1006/geno.1996.0298 8786136
-
Burset M Guigo R Evaluation of gene structure prediction programs Genomics 1996, 34(3):353-367. 10.1006/geno.1996.0298 8786136
-
(1996)
Genomics
, vol.34
, Issue.3
, pp. 353-367
-
-
Burset, M.1
Guigo, R.2
-
14
-
-
0034098729
-
Genome annotation assessment in Drosophila melanogaster
-
310877 10779488 10.1101/gr.10.4.483
-
Reese MG Hartzell G Harris NL Ohler U Abril JF Lewis SE Genome annotation assessment in Drosophila melanogaster Genome research 2000, 10(4):483-501. 310877 10779488 10.1101/gr.10.4.483
-
(2000)
Genome Research
, vol.10
, Issue.4
, pp. 483-501
-
-
Reese, M.G.1
Hartzell, G.2
Harris, N.L.3
Ohler, U.4
Abril, J.F.5
Lewis, S.E.6
-
15
-
-
23144437736
-
EGASP: Collaboration through competition to find human genes
-
10.1038/nmeth0805-575 16094379
-
Guigo R Reese MG EGASP: Collaboration through competition to find human genes Nature methods 2005, 2(8):575-577. 10.1038/nmeth0805-575 16094379
-
(2005)
Nature Methods
, vol.2
, Issue.8
, pp. 575-577
-
-
Guigo, R.1
Reese, M.G.2
-
16
-
-
33748671541
-
EGASP: Introduction
-
1810546 16925831 10.1186/gb-2006-7-s1-s1
-
Reese MG Guigo R EGASP: Introduction Genome biology 2006, 7(Suppl 1):S1.1-S1.3. 1810546 16925831 10.1186/gb-2006-7-s1-s1
-
(2006)
Genome Biology
, vol.7
, Issue.SUPPL. 1
-
-
Reese, M.G.1
Guigo, R.2
-
18
-
-
33846049901
-
WormBase: New content and better access
-
(Database) 1669750 17099234 10.1093/nar/gkl818
-
Bieri T Blasiar D Ozersky P Antoshechkin I Bastiani C Canaran P Chan J Chen N Chen WJ Davis P et al WormBase: New content and better access Nucleic acids research 2007, 35(Database):D506-510. 1669750 17099234 10.1093/nar/gkl818
-
(2007)
Nucleic Acids Research
-
-
Bieri, T.1
Blasiar, D.2
Ozersky, P.3
Antoshechkin, I.4
Bastiani, C.5
Canaran, P.6
Chan, J.7
Chen, N.8
Chen, W.J.9
Davis, P.10
-
21
-
-
0012340085
-
Finishing a whole-genome shotgun: Release 3 of the Drosophila melanogaster euchromatic genome sequence
-
RESEARCH0079 151181 12537568 10.1186/gb-2002-3-12-research0079
-
Celniker SE Wheeler DA Kronmiller B Carlson JW Halpern A Patel S Adams M Champe M Dugan SP Frise E et al Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence Genome biology 2002, 3:12. RESEARCH0079 151181 12537568 10.1186/ gb-2002-3-12-research0079
-
(2002)
Genome Biology
, vol.3
, pp. 12
-
-
Celniker, S.E.1
Wheeler, D.A.2
Kronmiller, B.3
Carlson, J.W.4
Halpern, A.5
Patel, S.6
Adams, M.7
Champe, M.8
Dugan, S.P.9
Frise, E.10
-
22
-
-
13444306641
-
NCBI Reference Sequence (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
-
(Database) 539979 15608248
-
Pruitt KD Tatusova T Maglott DR NCBI Reference Sequence (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins Nucleic acids research 2005, 33(Database):D501-504. 539979 15608248
-
(2005)
Nucleic Acids Research
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
23
-
-
33748641351
-
EGASP: The human ENCODE Genome Annotation Assessment Project
-
1-31 1810551 16925836 10.1186/gb-2006-7-s1-s2
-
Guigo R Flicek P Abril JF Reymond A Lagarde J Denoeud F Antonarakis S Ashburner M Bajic VB Birney E et al EGASP: The human ENCODE Genome Annotation Assessment Project Genome biology 2006, 7(Suppl 1):S2. 1-31 1810551 16925836 10.1186/gb-2006-7-s1-s2
-
(2006)
Genome Biology
, vol.7
, Issue.SUPPL. 1
-
-
Guigo, R.1
Flicek, P.2
Abril, J.F.3
Reymond, A.4
Lagarde, J.5
Denoeud, F.6
Antonarakis, S.7
Ashburner, M.8
Bajic, V.B.9
Birney, E.10
-
24
-
-
0034625260
-
Drosophila Dscam is an axon guidance receptor exhibiting extraordinary molecular diversity
-
10.1016/S0092-8674(00)80878-8 10892653
-
Schmucker D Clemens JC Shu H Worby CA Xiao J Muda M Dixon JE Zipursky SL Drosophila Dscam is an axon guidance receptor exhibiting extraordinary molecular diversity Cell 2000, 101(6):671-684. 10.1016/ S0092-8674(00)80878-8 10892653
-
(2000)
Cell
, vol.101
, Issue.6
, pp. 671-684
-
-
Schmucker, D.1
Clemens, J.C.2
Shu, H.3
Worby, C.A.4
Xiao, J.5
Muda, M.6
Dixon, J.E.7
Zipursky, S.L.8
-
25
-
-
33645521073
-
Evolution of exon-intron structure and alternative splicing in fruit flies and malarial mosquito genomes
-
1457027 16520458 10.1101/gr.4236606
-
Malko DB Makeev VJ Mironov AA Gelfand MS Evolution of exon-intron structure and alternative splicing in fruit flies and malarial mosquito genomes Genome research 2006, 16(4):505-509. 1457027 16520458 10.1101/ gr.4236606
-
(2006)
Genome Research
, vol.16
, Issue.4
, pp. 505-509
-
-
Malko, D.B.1
Makeev, V.J.2
Mironov, A.A.3
Gelfand, M.S.4
-
28
-
-
13444267288
-
A computational and experimental approach to validating annotations and gene predictions in the Drosophila melanogaster genome
-
545494 15668397 10.1073/pnas.0409421102
-
Yandell M Bailey AM Misra S Shu S Wiel C Evans-Holm M Celniker SE Rubin GM A computational and experimental approach to validating annotations and gene predictions in the Drosophila melanogaster genome Proceedings of the National Academy of Sciences of the United States of America 2005, 102(5):1566-1571. 545494 15668397 10.1073/pnas.0409421102
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.5
, pp. 1566-1571
-
-
Yandell, M.1
Bailey, A.M.2
Misra, S.3
Shu, S.4
Wiel, C.5
Evans-Holm, M.6
Celniker, S.E.7
Rubin, G.M.8
-
29
-
-
17844368081
-
Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions
-
1074372 15805498 10.1101/gr.3329005
-
Wei C Lamesch P Arumugam M Rosenberg J Hu P Vidal M Brent MR Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions Genome Res 2005, 15(4):577-582. 1074372 15805498 10.1101/gr.3329005
-
(2005)
Genome Res
, vol.15
, Issue.4
, pp. 577-582
-
-
Wei, C.1
Lamesch, P.2
Arumugam, M.3
Rosenberg, J.4
Hu, P.5
Vidal, M.6
Brent, M.R.7
-
30
-
-
0037705467
-
Conservation of human alternative splice events in mouse
-
156037 12736303 10.1093/nar/gkg355
-
Thanaraj TA Clark F Muilu J Conservation of human alternative splice events in mouse Nucleic Acids Res 2003, 31(10):2544-2552. 156037 12736303 10.1093/nar/gkg355
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.10
, pp. 2544-2552
-
-
Thanaraj, T.A.1
Clark, F.2
Muilu, J.3
-
31
-
-
0037669010
-
Low conservation of alternative splicing patterns in the human and mouse genomes
-
10.1093/hmg/ddg137 12761046
-
Nurtdinov RN Artamonova II Mironov AA Gelfand MS Low conservation of alternative splicing patterns in the human and mouse genomes Hum Mol Genet 2003, 12(11):1313-1320. 10.1093/hmg/ddg137 12761046
-
(2003)
Hum Mol Genet
, vol.12
, Issue.11
, pp. 1313-1320
-
-
Nurtdinov, R.N.1
Artamonova, I.I.2
Mironov, A.A.3
Gelfand, M.S.4
-
32
-
-
0036337915
-
A genomic view of alternative splicing
-
10.1038/ng0102-13 11753382
-
Modrek B Lee C A genomic view of alternative splicing Nature genetics 2002, 30(1):13-19. 10.1038/ng0102-13 11753382
-
(2002)
Nature Genetics
, vol.30
, Issue.1
, pp. 13-19
-
-
Modrek, B.1
Lee, C.2
-
33
-
-
0035861990
-
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
-
10.1006/jmbi.2000.5197 11743721
-
Remm M Storm CE Sonnhammer EL Automatic clustering of orthologs and in-paralogs from pairwise species comparisons J Mol Biol 2001, 314(5):1041-1052. 10.1006/jmbi.2000.5197 11743721
-
(2001)
J Mol Biol
, vol.314
, Issue.5
, pp. 1041-1052
-
-
Remm, M.1
Storm, C.E.2
Sonnhammer, E.L.3
|