Analysis of gene expression patterns by microarray hybridization in blood mononuclear cells of SLA-DRB1 defined Canadian Yorkshire pigs

BMC Research Notes

Volumn 1, Issue , 2008, Pages

  Nino Soto, Maria I ^a   Jozani, Razi Jafari ^b   Bridle, Byram ^a   Mallard, Bonnie A ^a  

^a UNIVERSITY OF GUELPH   (Canada)

^b UNIVERSITY OF TEHRAN   (Iran)

Author keywords

[No Author keywords available]

Indexed keywords

BOVINAE; SUIDAE; SUS;

EID: 62449207976     PISSN: None     EISSN: 17560500     Source Type: Journal    
DOI: 10.1186/1756-0500-1-31     Document Type: Article

References (24)

1. Gene organization and polymorphism of the swine major histocompatibility complex. A Ando P Chardon, Anim Sci J 2006 77 127 133 10.1111/j.1740-0929.2006. 00331.x
2. Genomic organization of the mammalian MHC. A Kumanovics T Takada KF Lindahl, Annu Rev Immunol 2003 21 629 657 10.1146/annurev.immunol.21.090501. 080116 12500978
3. Nomenclature for factors of the swine leukocyte antigen class II system, 2005. DM Smith JK Lunney CS Ho GW Martens A Ando JH Lee L Schook C Renard P Chardon, Tissue Antigens 2005 66 623 639 10.1111/j.1399-0039.2005.00492.x 16305679
4. Porcine major histocompatibility complex. M Vaiman P Chardon MF Rothschild, Rev Sci Tech 1998 17 95 107 9638803
5. Characterization of swine leukocyte antigen polymorphism by sequence-based and PCR-SSP methods in Meishan pigs. CS Ho ES Rochelle GW Martens LB Schook DM Smith, Immunogenetics 2006 58 873 882 10.1007/s00251-006-0145-y 17039361
6. Advances in swine biomedical model genomics. JK Lunney, Int J Biol Sci 2007 3 179 184 17384736
7. Rat genotype influences quantitative and qualitative aspects of xenogeneic immune response to pig blood mononuclear cells. BW Bridle BN Wilkie AM Jevnikar BA Mallard, Xenotransplantation 2006 13 299 307 10.1111/j.1399-3089. 2006.00306.x 16768723
8. Deviation of xenogeneic immune response and bystander suppression in rats fed porcine blood mononuclear cells. BW Bridle BN Wilkie AM Jevnikar BA Mallard, Transpl Immunol 2007 17 262 270 10.1016/j.trim.2007.01.010 17493529
9. Basic local alignment search tool. SF Altschul W Gish W Miller EW Myers DJ Lipman, J Mol Biol 1990 215 403 410 2231712
10. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. JD Thompson DG Higgins TJ Gibson, Nucleic Acids Res 1994 22 4673 4680 7984417 10.1093/nar/22.22.4673
11. Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. A Brazma P Hingamp J Quackenbush G Sherlock P Spellman C Stoeckert J Aach W Ansorge CA Ball HC Causton T Gaasterland P Glenisson FC Holstege IF Kim V Markowitz JC Matese H Parkinson A Robinson U Sarkans S Schulze-Kremer J Stewart R Taylor J Vilo M Vingron, Nat Genet 2001 29 365 371 10.1038/ng1201-365 11726920
12. Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. YH Yang S Dudoit P Luu DM Lin V Peng J Ngai TP Speed, Nucleic Acids Res 2002 30 15 11842121 10.1093/nar/30.4.e15
13. Controlling the false discovery rate: a practical and powerful approach to multiple testing. Y Benjamini Y Hochberg, J Roy Statistic Soc Ser B 1995 57 289 300
14. Construction and application of a bovine immune-endocrine cDNA microarray. W Tao B Mallard N Karrow B Bridle, Vet Immunol Immunopathol 2004 101 1 17 10.1016/j.vetimm.2003.10.011 15261689
15. Comparative environmental genomics in non-model species: using heterologous hybridization to DNA-based microarrays. BA Buckley, J Exp Biol 2007 210 1602 1606 10.1242/jeb.002402 17449825
16. The influence of the swine major histocompatibility genes on antibody and cell-mediated immune responses to immunization with an aromatic-dependent mutant of Salmonella typhimurium. JS Lumsden BW Kennedy BA Mallard BN Wilkie, Can J Vet Res 1993 57 14 18 8431799
17. Trichinella spiralis: genetic basis and kinetics of the anti-encysted muscle larval response in miniature swine. KB Madden RF Moeller Jr. LW Douglass T Goldman JK Lunney, Exp Parasitol 1993 77 23 35 10.1006/expr.1993.1057 8344404
18. Possible relationships between SLA and porcine reproduction. C Renard M Vaiman, Reprod Nutr Dev 1989 29 569 576 10.1051/rnd:19890506 2513834
19. The effect of swine leukocyte antigen haplotype on birth and weaning weights in miniature pigs and the role of statistical analysis in this estimation. BA Mallard BW Kennedy BN Wilkie, J Anim Sci 1991 69 559 564 1901842
20. Conserved extended haplotypes of the major histocompatibility complex: further characterization. MT Dorak W Shao HK Machulla ES Lobashevsky J Tang MH Park RA Kaslow, Genes Immun 2006 7 450 467 10.1038/sj.gene.6364315 16791278
21. HLA genomics in the third millennium. J Trowsdale, Curr Opin Immunol 2005 17 498 504 16085407
22. Ligation of MHC class II molecules differentially upregulates TNF beta gene expression in B cell lines of different MHC class II haplotypes. W Guo W Mourad D Charron R Al Daccak, Hum Immunol 1999 60 312 322 10.1016/S0198-8859(98) 00131-1 10363722
23. An update of the HLA genomic region, locus information and disease associations: 2004. T Shiina H Inoko JK Kulski, Tissue Antigens 2004 64 631 649 10.1111/j.1399-0039.2004.00327.x 15546336
24. RC Littell GA Milliken WW Stroup RD Wolfinger, SAS System for Mixed Models Cary, NC, USA, Inc. SASI, 1996 656