Helix-coil transition of DNA monitored by pressure perturbation calorimetry

Journal of Physical Chemistry B

Volumn 113, Issue 6, 2009, Pages 1738-1742

  Rayan, Gamal ^a,b   Tsamaloukas, Alekos D ^a   Macgregor Jr , Robert B ^a   Heerklotz, Heiko ^a  

^a UNIVERSITY OF TORONTO   (Canada)

^b LABORATOIRE DE PHYSIQUE STATISTIQUE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

CALORIMETRY; DNA; GENES; IONIC STRENGTH; IONIZATION OF LIQUIDS; METALLIC GLASS; NUCLEIC ACIDS; PHOTOLITHOGRAPHY; POLYMERS; PRESSURE EFFECTS; SODIUM; THERMAL EFFECTS; THERMAL EXPANSION; ULTRAVIOLET SPECTROSCOPY; VOLUME MEASUREMENT;

ALTERNATING COPOLYMERS; AQUEOUS SOLUTIONS; BASE PAIRS; CO-EFFICIENT OF THERMAL EXPANSIONS; COIL FORMS; DNA POLYMERS; EFFECT OF PRESSURES; ENTHALPY CHANGES; HELIX-COIL TRANSITIONS; HELIX-TO-COIL TRANSITIONS; MOLAR VOLUMES; PRESSURE PERTURBATION CALORIMETRIES; SHEDDING LIGHTS; UV SPECTROSCOPIES; VOLUME CHANGES; WATER MOLECULES; WATER-ACCESSIBLE SURFACES;

ORGANIC POLYMERS;

EID: 62149097929     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp808253t     Document Type: Article

References (46)

1. Wu, J. Q.; Macgregor, R. B., Jr. Biochemistry 1993, 52 (46), 12531-7.
2. Wu, J. Q.; Macgregor, R. B., Jr. Biopolymers 1995, 35 (4), 369-76.
3. Rayan, G.; Macgregor, R. B., Jr. J. Phys. Chem. B 2005, 109(32), 15558-65.
4. Macgregor, R. B., Jr. Biopolymers 1996, 38 (3), 321-7.
5. Buckin, V. A.; Kankiya, B. I.; Bulichov, N. V.; Lebedev, A. V.; Gukovsky, I.; Chuprina, V. P.; Sarvazyan, A. P.; Williams, A. R. Nature 1989, 340 (6231), 321-2.
6. Chalikian, T. V.; Volker, J.; Srinivasan, A. R.; Olson, W. K.; Breslauer, K. J. Biopolymers 1999, 50 (5), 459-71.
7. Marky, L. A.; Kupke, D. W. Biochemistry 1989, 28 (26), 9982-8.
8. Marky, L. A.; Macgregor, R. B., Jr. Biochemistry 1990, 29 (20), 4805-11.
9. Kopka, M. L.; Fratini, A. V.; Drew, H. R.; Dickerson, R. E. J. Mol. Biol. 1983, 163 (1), 129-46.
10. Chuprina, V. P. Nucleic Acids Res. 1987, 15 (1), 293-311.
11. (a) Brandts, J.; Lin, L. Thermochim. Acta 2003, 414, 75-80.
12. (b) 2003, 414, 95-100.
13. Heerklotz, H.; Tsamaloukas, A.; Kita-Tokarczyk, K.; Strunz, P.; Gutberlet, T. J. Am. Chem. Soc. 2004, 126 (50), 16544-52.
14. Kujawa, P.; Winnik, F. M. Macromolecules 2001, 34, 4130-4135.
15. Lin, L. N.; Brandts, J. F.; Brandts, J. M.; Plotnikov, V. Anal. Biochem. 2002, 302(1), 144-60.
16. Mitra, L.; Smolin, N.; Ravindra, R.; Royer, C; Winter, R. Phys. Chem. Chem. Phys. 2006, 8 (11), 1249-65.
17. Dzwolak, W.; Ravindra, R.; Winter, R. Phys. Chem. Chem. Phys. 2004, 6 (8), 1938-1943.
18. Heerklotz, H. Biophys. J. 2002, 83 (5), 2693-701.
19. Heerklotz, H.; Seelig, J. Biophys. J. 2002, 82 (3), 1445-52.
20. Wang, S. L.; Epand, R. M. Chem. Phys. Lipids 2004, 129 (1), 21-30.
21. Heerklotz, H.; Tsamaloukas, A. Biophys. J. 2006, 91 (2), 600-7.
22. Inman, R. B.; Baldwin, R. L. J. Mol. Biol. 1962, 5, 172-84.
23. Heerklotz, P. D. Methods Mol. Biol. 2007, 400, 197-206.
24. Privalov, G. P.; Privalov, P. L. Methods Enzymol. 2000, 323, 31-62.
25. Privalov, P. L.; Dragan, A. I. Biophys Chem 2007, 126 (1-3), 16-24.
26. Chalikian, T. V.; Sarvazyan, A. P.; Plum, G. E.; Breslauer, K. J. Biochemistry 1994, 33 (9), 2394-401.
27. Tikhomirova, A.; Chalikian, T. V. J. Mol. Biol. 2004, 341 (2), 551-63.
28. Wu, J. Q.; Macgregor, R. B., Jr. Anal. Biochem. 1993, 211 (1), 66-71.
29. Marky, L. A.; Breslauer, K. J. Biopolymers 1987, 26 (9), 1601-20.
30. Winter, R. Curr. Opin. Colloid Interface Sci. 2001, 6, 303-312.
31. Kauzmann, W. Nature 1987, 325, 763-764.
32. Lin, M. C; Eid, P.; Wong, P. T.; Macgregor, R. B., Jr. Biophys. Chem. 1999, 76 (2), 87-94.
33. Collins, M. D.; Hummer, G.; Quillin, M. L.; Matthews, B. W.; Gruner, S. M. Proc. Natl. Acad. Sci. U. S. A. 2005, 102 (46), 16668-71.
34. Day, R.; Garcia, A. E. Proteins 2008, 70 (4), 1175-84.
35. Girard, E.; Prange, T.; Dhaussy, A. C; Migianu-Griffoni, E.; Lecouvey, M.; Chervin, J. C; Mezouar, M.; Kahn, R.; Fourme, R. Nucleic Acids Res. 2007, 35 (14), 4800-8.
36. Chalikian, T. V.; Volker, J.; Plum, G. E.; Breslauer, K. J. Proc. Natl. Acad. Sci. U. S. A. 1999, 96 (14), 7853-8.
37. Chalikian, T. V.; Macgregor, R.B., Jr. Phys. Life Rev. 2007, 4, 91-115.
38. Chalikian, T. V.; Breslauer, K. J. Biopolymers 1998, 48 (4), 264-80.
39. Rentzeperis, D.; Kupke, D. W.; Marky, L. A. Biopolymers 1993, 55(1), 117-25.
40. Marky, L. A.; Kupke, D. W. Methods Enzymol. 2000, 323, 419-41.
41. Ebel, H.; Grabitz, P.; Heimburg, T. J. Phys. Chem. B 2001, 105(30), 7353-7360.
42. Haq, I.; Chowdhry, B. Z.; Chaires, J. B. Eur. Biophys. J. 1997, 26 (6), 419-26.
43. Gruenwedel, D. W.; Salt effects on the denaturation of, DNA. IV. Biochim. Biophys. Acta 1975, 395 (3), 246-57.
44. Heerklotz, H. J. Phys.: Condens. Matter 2004, 16, R441-R467.
45. Ledru, J.; Imrie, C. T.; Hutchinson, J. M.; Höhne, G. W. H. Thermochim. Acta 2006, 446, 66-72.
46. Dragan, A. I.; Russell, D. J.; P. L. Biopolymers 2009, 91 (1), 95-101.