Comparison of the heat- and pressure-induced helix-coil transition of two DNA copolymers

Journal of Physical Chemistry B

Volumn 109, Issue 32, 2005, Pages 15558-15565

  Rayan, Gamal ^a   Macgregor Jr , Robert B ^a  

^a UNIVERSITY OF TORONTO   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ATMOSPHERIC PRESSURE; DNA; HYDROSTATIC PRESSURE; ISOTHERMS; PHASE DIAGRAMS; PHASE TRANSITIONS; THERMAL EFFECTS; THERMAL EXPANSION;

ION CONCENTRATION; ISOTHERMAL CONDITIONS; PRESSURE-INDUCED HELIX-COIL TRANSITION; TEMPERATURE DEPENDENCE;

COPOLYMERS;

BIOPOLYMER; DNA;

ARTICLE; CHEMISTRY; COMPARATIVE STUDY; CONFORMATION; DNA DENATURATION; HEAT; PRESSURE;

BIOPOLYMERS; DNA; HEAT; NUCLEIC ACID CONFORMATION; NUCLEIC ACID DENATURATION; PRESSURE;

EID: 24344484719     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp050899c     Document Type: Article

References (51)

1. Franklin, R. E.; Gosling, R. G. Nature 1953, 171, 740-741.
2. Wilkins, M. H. F. Science 1963, 140, 941-950.
3. Mahendrasingam, A.; Forsyth, V. T.; Hussain, R.; Greenall, R. J.; Pigram, W. J.; Fuller, W. Science 1986, 233, 195-197.
4. Fuller, W.; Forsyth, T.; Mahendrasingam, A. Philos. Trans. R. Soc. London, Ser. B 2004, 359, 1237-1248.
5. Drew, H. R.; Dickerson, R. E. J. Mol. Biol. 1981, 151, 535-556.
6. Prive, G. G.; Heinenmann, U.; Chandrasegran, S.; Kan, L. S.; Kopka, M. L.; Dickerson, R. E. Science 1981, 238, 498-504.
7. Kuntz, I. D.; Brassfield, T. S.; Law, G. D.; Purcell, G. V. Science 1969, 163, 1329-1331.
8. Belton, P. S. Cell. Mol. Life. Sci. 2000, 57, 993-998.
9. Falk, M.; Hartman, K. A., Jr.; Lord, R. C. J. Am. Chem. Soc. 1963, 85, 387-391.
10. Keller, P. B.; Hartman, K. A. Nucleic Acids Res. 1986, 14, 8167-8182.
11. Falk, M.; Hartman, K. A., Jr.; Lord, R. C. J. Am. Chem. Soc. 1962, 84, 3843-3846.
12. Chalikian, T. V.; Breslauer, K. J. Curr. Opin. Struct. Biol. 1998, 5, 657-664.
13. Chalikian, T. V.; Sarvazyan, A. P.; Plum, G. E.; Breslauer, K. J. Biochemistry 1994, 33, 2394-2401.
14. Chalikian, T. V.; Volker, J.; Plum, G. E.; Breslauer, K. J. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 7853-7858.
15. Chalikian, T. V.; Volker, J.; Srinivasan, A. R.; Olson, W. K.; Breslauer, K. J. Biopolymeers 1999, 50, 459-471.
16. Saenger, W. In Principles of Nucleic Acid Structure; Springer-Verlag: Berlin, Germany, 1984; pp 368-384.
17. Bloomfield, V. A.; Crothers, D. M.; Tinoco, I., Jr. In Nucleic Acids: Structures, Properties, and Functions; University Science Books: Sausalito, CA, 2000; pp 475-534.
18. Wu, J. Q.; Macgregor, R. B., Jr. Biochemistry 1993, 32, 12531-12537.
19. Wu, J. Q.; Macgregor, R. B., Jr. Biopolymers 1995, 35, 369-375.
20. Macgregor, R. B., Jr. Biopolymers 1996, 38, 321-327.
21. Lin, M. C.; Macgregor, R. B., Jr. Biochemistry 1996, 35, 11846-11851.
22. Lin, M. C.; Macgregor, R. B., Jr. Biochemistry 1997, 36, 6539-6544.
23. Macgregor, R. B., Jr. Biopolymers 1998, 48, 253-263.
24. Macgregor, R. B., Jr. Biochim. Biophys. Acta 2002, 1595, 266-276.
25. Chalikian, T. V.; Breslauer, K. J. Biopolymers 1998, 48, 264-280.
26. Dubins, D. N.; Lee, A.; Macgregor, R. B., Jr.; Chalikian, T. V. J. Am. Chem. Soc. 2001, 123, 9254-9259.
27. Schmechel, D. E.; Crothers, D. M. Biopolymers 1971, 10, 465-480.
28. Grant, R. C.; Harwood, S. J.; Wells, R. D. J. Am. Chem. Soc. 1968, 90, 4474-4476.
29. Wu, J. Q.; Macgregor, R. B., Jr. Anal. Biochem. 1993, 211, 66-71.
30. Marky, L. A.; Breslauer, K. J. Biopolymers 1987, 26, 1601-1620.
31. Haq, I.; Chowdhry, B. Z.; Chaires, J. B. Eur. Biophys. J. 1997, 26, 419-426.
32. Nordmeier, E. J. Phys. Chem. 1992, 96, 1494-1501.
33. Tikhomirova, A.; Taulier, N.; Chalikian, T. V. J. Am. Chem. Soc. 2004, 126, 16387-16394.
34. Rouzina, I.; Bloomfield, V. A. Biophys. J. 1999, 77, 3242-3251.
35. Klump, H. H. In Biochemical Thermodynamics; Jones, M. N., Ed.; Elsevier: Amsterdam, The Netherlands, 1988; pp 100-144.
36. Gruenwedel, D. W. Biochim. Biophys. Acta 1975, 395, 246-257.
37. Elson, E. L. J. Mol. Biol. 1970, 54, 401-415.
38. Record, M. T., Jr.; Anderson, C. F.; Lohman, T. M. Q. Rev. Biophys. 1978, 2, 103-178.
39. Gruenwedel, D. W. Biochim. Biophys. Acta 1975, 340, 16-30.
40. Duguid, J. G.; Bloomfield, V. A.; Benevides, J. M.; Thomas, G. J., Jr. Biophys. J. 1996, 71, 3350-3360.
41. Saenger, W.; Hunter, W. N.; Kennard, O. Nature 1986, 6095, 385-388.
42. Saenger, W. Annu. Rev. Biophys. Biophys. Chem. 1987, 16, 93-114.
43. Westhof, E. Annu. Rev. Biophys. Biophys. Chem. 1988, 17, 125-144.
44. Squire, P. G.; Himmel, M. E. Arch. Biochem. Biophys. 1979, 196, 165-177.
45. Chalikian, T. V.; Totrov, M.; Abagyan, R.; Breslauer, K. J. J. Mol. Biol. 1996, 260, 588-603.
46. Chalikian, T. V. Annu. Rev. Biophys. Biomol. Struct. 2003, 32, 207-235.
47. Pierotti, R. A. J. Phys. Chem. 1965, 69, 281-288.
48. Stillinger, F. H. J. Solution Chem. 1973, 2, 141-158.
49. Pierotti, R. A. Chem. Rev. 1976, 76, 717-726.
50. Kharakoz, D. P. J. Solution Chem. 1992, 21, 569-595.
51. Lin, M. C.; Eid, P.; Wong, P. T. T.; Macgregor, R. B., Jr. Biophys. Chem. 1999, 76, 87-94.