메뉴 건너뛰기




Volumn 26, Issue 6, 1997, Pages 419-426

Singular value decomposition of 3-d DNA melting curves reveals complexity in the melting process

Author keywords

Calorimetry; DNA; Statistical analysis; Thermodynamics; UV spectroscopy

Indexed keywords

DNA;

EID: 0030724792     PISSN: 01757571     EISSN: None     Source Type: Journal    
DOI: 10.1007/s002490050096     Document Type: Article
Times cited : (61)

References (23)
  • 2
    • 0002659517 scopus 로고
    • Methods for obtaining thermodynamic data on oligonucleotide transitions
    • Hinz H-J (ed) Springer, Berlin Heidelberg New York
    • Breslauer KJ (1986) Methods for obtaining thermodynamic data on oligonucleotide transitions. In: Hinz H-J (ed) Thermodynamic data for biochemistry and biotechnology. Springer, Berlin Heidelberg New York, pp 402-427
    • (1986) Thermodynamic Data for Biochemistry and Biotechnology , pp. 402-427
    • Breslauer, K.J.1
  • 3
    • 0029100232 scopus 로고
    • Extracting thermodynamic data from equilibrium melting curves for oligonucleotide order-disorder transitions
    • Johnson MJ, Ackers GK (eds) Academic Press, New York
    • Breslauer KJ (1995) Extracting thermodynamic data from equilibrium melting curves for oligonucleotide order-disorder transitions. In: Johnson MJ, Ackers GK (eds) Methods in enzymology, vol 259. Academic Press, New York, pp 221 -242
    • (1995) Methods in Enzymology , vol.259 , pp. 221-242
    • Breslauer, K.J.1
  • 5
    • 0011379308 scopus 로고
    • On the mechanism of deoxyribonucleic acid unwinding
    • Crothers DM (1969) On the mechanism of deoxyribonucleic acid unwinding. Accounts Chem Res 2: 225-232
    • (1969) Accounts Chem Res , vol.2 , pp. 225-232
    • Crothers, D.M.1
  • 6
    • 0002673697 scopus 로고
    • The thermodynamics of conformation transitions in polynucleotides
    • Hinz H-J (ed) Springer, Berlin Heidelberg New York
    • Filmanov VV (1986) The thermodynamics of conformation transitions in polynucleotides. In: Hinz H-J (ed) Thermodynamic data for biochemistry and biotechnology. Springer, Berlin Heidelberg New York, pp 377-401
    • (1986) Thermodynamic Data for Biochemistry and Biotechnology , pp. 377-401
    • Filmanov, V.V.1
  • 7
    • 0017836908 scopus 로고
    • Statistical mechanical deconvolution of thermal transitions in macromolecules. I. Theory and application to homogeneous systems
    • Friere E, Biltonen RL (1978 a) Statistical mechanical deconvolution of thermal transitions in macromolecules. I. Theory and application to homogeneous systems. Biopolymers 17: 463-479
    • (1978) Biopolymers , vol.17 , pp. 463-479
    • Friere, E.1    Biltonen, R.L.2
  • 8
    • 0017887322 scopus 로고
    • Statistical mechanical deconvolution of thermal transitions in macromolecules. III. Application to double-stranded to single stranded transitions of nucleic acids
    • Friere E, Biltonen RL (1978 b) Statistical mechanical deconvolution of thermal transitions in macromolecules. III. Application to double-stranded to single stranded transitions of nucleic acids. Biopolymers 17: 497-510
    • (1978) Biopolymers , vol.17 , pp. 497-510
    • Friere, E.1    Biltonen, R.L.2
  • 9
    • 0027976593 scopus 로고
    • Deconvolutions based on singular value decomposition and the pseudoinverse: A guide for beginners
    • Hendler RW, Shrager RI (1994) Deconvolutions based on singular value decomposition and the pseudoinverse: a guide for beginners. J Biochem Biophys Methods 28: 1-33
    • (1994) J Biochem Biophys Methods , vol.28 , pp. 1-33
    • Hendler, R.W.1    Shrager, R.I.2
  • 10
    • 0026633609 scopus 로고
    • Singular value decomposition: Application to analysis of experimental data
    • Brand L, Johnson ML (eds) Academic Press, New York
    • Henry ER, Hofrichter J (1992) Singular value decomposition: application to analysis of experimental data. In: Brand L, Johnson ML (eds) Methods in enzymology, vol 210. Academic Press, New York, pp 129-191
    • (1992) Methods in Enzymology , vol.210 , pp. 129-191
    • Henry, E.R.1    Hofrichter, J.2
  • 11
    • 0024589495 scopus 로고
    • A premelting conformational transition in poly(dA)-poly(dT) coupled to daunomycin binding
    • Herrera JE, Chaires JB (1989) A premelting conformational transition in poly(dA)-poly(dT) coupled to daunomycin binding. Biochemistry 28: 1993-2000
    • (1989) Biochemistry , vol.28 , pp. 1993-2000
    • Herrera, J.E.1    Chaires, J.B.2
  • 13
    • 0026703842 scopus 로고
    • Analysis of circular dichroism spectra
    • Brand L, Johnson ML (eds) Academic Press, New York
    • Johnson WC Jr (1992) Analysis of circular dichroism spectra. In: Brand L, Johnson ML (eds) Methods in enzymology, vol 210. Academic Press, New York, pp 426-447
    • (1992) Methods in Enzymology , vol.210 , pp. 426-447
    • Johnson W.C., Jr.1
  • 14
    • 0002934186 scopus 로고
    • Conformational transitions in nucleic acids
    • Jones MN (ed) Elsevier, Amsterdam
    • Klump H (1988) Conformational transitions in nucleic acids. In: Jones MN (ed) Biochemical thermodynamics. Elsevier, Amsterdam, pp 100-144
    • (1988) Biochemical Thermodynamics , pp. 100-144
    • Klump, H.1
  • 15
    • 0023406843 scopus 로고
    • Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves
    • Marky LA, Breslauer KJ (1987) Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves. Biopolymers 26: 1601-1620
    • (1987) Biopolymers , vol.26 , pp. 1601-1620
    • Marky, L.A.1    Breslauer, K.J.2
  • 16
    • 0016906026 scopus 로고
    • Premelting changes in DNA conformation
    • Palecek E (1976) Premelting changes in DNA conformation. Prog Nucleic Acid Res Mol Biol 18: 151-213
    • (1976) Prog Nucleic Acid Res Mol Biol , vol.18 , pp. 151-213
    • Palecek, E.1
  • 17
    • 0029036464 scopus 로고
    • Thermodynamics of an intramolecular DNA triple helix: A calorimetric and specroscopic study of the pH and salt dependence of thermally induce structural transitions
    • Plum GE, Breslauer KJ (1995) Thermodynamics of an intramolecular DNA triple helix: a calorimetric and specroscopic study of the pH and salt dependence of thermally induce structural transitions. J Mol Biol 248: 679-695
    • (1995) J Mol Biol , vol.248 , pp. 679-695
    • Plum, G.E.1    Breslauer, K.J.2
  • 19
    • 0024407937 scopus 로고
    • Helix - Coil transitions of parallel-stranded DNA. Thermodynamics of hairpin and linear duplex oligonucleotides
    • Ramsing NB, Rippe K, Jovin TM (1989) Helix - coil transitions of parallel-stranded DNA. Thermodynamics of hairpin and linear duplex oligonucleotides. Biochemistry 28: 9528-9535
    • (1989) Biochemistry , vol.28 , pp. 9528-9535
    • Ramsing, N.B.1    Rippe, K.2    Jovin, T.M.3
  • 21
    • 0028290602 scopus 로고
    • Hemoglobin - Oxygen equilibrium binding: Rapid-scanning spectrophotometry and singular value decomposition
    • Everse J, Vandegriff KD, Winslow RM (eds) Academic Press, New York
    • Vandegriff KD, Shrager RI (1994) Hemoglobin - oxygen equilibrium binding: rapid-scanning spectrophotometry and singular value decomposition. In: Everse J, Vandegriff KD, Winslow RM (eds) Methods in enzymology, vol 232. Academic Press, New York, pp 460-485
    • (1994) Methods in Enzymology , vol.232 , pp. 460-485
    • Vandegriff, K.D.1    Shrager, R.I.2
  • 22
    • 0015258260 scopus 로고
    • The helix-coil transition of poly(dA) · poly(dT) and poly(dA-dT) · poly(dA-dT)
    • Wartell RM (1972) The helix-coil transition of poly(dA) · poly(dT) and poly(dA-dT) · poly(dA-dT). Biopolymers 11: 745-759
    • (1972) Biopolymers , vol.11 , pp. 745-759
    • Wartell, R.M.1
  • 23
    • 0002459355 scopus 로고
    • Thermal denaturation of DNA molecules: A comparison of theory with experiment
    • Wartell RM, Benight AS (1985) Thermal denaturation of DNA molecules: a comparison of theory with experiment. Phys Rep 126: 67-107
    • (1985) Phys Rep , vol.126 , pp. 67-107
    • Wartell, R.M.1    Benight, A.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.