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Volumn 49, Issue 2, 2009, Pages 378-386

In vitro-targeted gene identification in patients with hepatitis C using a genome-wide microarray technology

Author keywords

[No Author keywords available]

Indexed keywords

ALPHA TROPOMYOSIN; ANAPHASE PROMOTING COMPLEX; B LYMPHOCYTE GROWTH FACTOR; CANNABINOID 1 RECEPTOR; COMPLEMENTARY DNA; DICKKOPF 1 PROTEIN; HYPOXIA INDUCIBLE FACTOR 1ALPHA; IRON REGULATORY FACTOR; NATRIURETIC FACTOR; NATRIURETIC PEPTIDE RECEPTOR B; PHOSPHODIESTERASE IV; PROTEIN TYROSINE PHOSPHATASE; REACTIVE OXYGEN METABOLITE; SODIUM PHOSPHATE COTRANSPORTER 1; TRANSMEMBRANE CONDUCTANCE REGULATOR; TYROSINE; VASCULOTROPIN; ATRIAL NATRIURETIC FACTOR RECEPTOR; HIF1A PROTEIN, HUMAN; IRON; MESSENGER RNA;

EID: 61949276507     PISSN: 02709139     EISSN: None     Source Type: Journal    
DOI: 10.1002/hep.22677     Document Type: Article
Times cited : (18)

References (42)
  • 1
    • 0033916804 scopus 로고    scopus 로고
    • Epidemiology of hepatitis C: Geographic differences and temporal trends
    • Wasley A, Alter MJ. Epidemiology of hepatitis C: Geographic differences and temporal trends. Semin Liver Dis 2000;20:1-16.
    • (2000) Semin Liver Dis , vol.20 , pp. 1-16
    • Wasley, A.1    Alter, M.J.2
  • 2
    • 0036242165 scopus 로고    scopus 로고
    • Impact of pegylated interferon alfa-2b and ribavirin on liver fibrosis in patients with chronic hepatitis C
    • Poynard T, McHutchison J, Manns M, Trepo C, Lindsay K, Goodman Z, et al. Impact of pegylated interferon alfa-2b and ribavirin on liver fibrosis in patients with chronic hepatitis C. Gastroenterology 2002;122:1303-1313.
    • (2002) Gastroenterology , vol.122 , pp. 1303-1313
    • Poynard, T.1    McHutchison, J.2    Manns, M.3    Trepo, C.4    Lindsay, K.5    Goodman, Z.6
  • 3
    • 0033180064 scopus 로고    scopus 로고
    • Hepatocellular mitochondrial alterations in patients with chronic hepatitis C: Ultrastructural and biochemical findings
    • Barbaro G, Di Lorenzo G, Asti A, Ribersani M, Belloni G, Grisorio B, et al. Hepatocellular mitochondrial alterations in patients with chronic hepatitis C: Ultrastructural and biochemical findings. Am J Gastroenterol 1999;94:2198-2205.
    • (1999) Am J Gastroenterol , vol.94 , pp. 2198-2205
    • Barbaro, G.1    Di Lorenzo, G.2    Asti, A.3    Ribersani, M.4    Belloni, G.5    Grisorio, B.6
  • 4
    • 0036023302 scopus 로고    scopus 로고
    • Oxidative stress EPR measurement in human liver by radical-probe technique. Correlation with etiology, histology and cell proliferation
    • Valgimigli M, Valgimigli L, Trere D, Gaiani S, Pedulli GF, Gramantieri L, et al. Oxidative stress EPR measurement in human liver by radical-probe technique. Correlation with etiology, histology and cell proliferation. Free Radic Res 2002;36:939-948.
    • (2002) Free Radic Res , vol.36 , pp. 939-948
    • Valgimigli, M.1    Valgimigli, L.2    Trere, D.3    Gaiani, S.4    Pedulli, G.F.5    Gramantieri, L.6
  • 5
    • 28244466794 scopus 로고    scopus 로고
    • Induction of the hypoxia-inducible factor system by low levels of heat shock protein 90 inhibitors
    • Ibrahim NO, Hahn T, Franke C, Stiehl DP, Wirthner R, Wenger RH, et al. Induction of the hypoxia-inducible factor system by low levels of heat shock protein 90 inhibitors. Cancer Res 2005;65:11094-11100.
    • (2005) Cancer Res , vol.65 , pp. 11094-11100
    • Ibrahim, N.O.1    Hahn, T.2    Franke, C.3    Stiehl, D.P.4    Wirthner, R.5    Wenger, R.H.6
  • 6
    • 33744517652 scopus 로고    scopus 로고
    • Iron, HCV, and liver cancer: Hard metal setting the pace?
    • Mueller S, Afdhal NH, Schuppan D. Iron, HCV, and liver cancer: Hard metal setting the pace? Gastroenterology 2006;130:2229-2234.
    • (2006) Gastroenterology , vol.130 , pp. 2229-2234
    • Mueller, S.1    Afdhal, N.H.2    Schuppan, D.3
  • 7
    • 0036165333 scopus 로고    scopus 로고
    • Mitochondrial injury, oxidative stress, and antioxidant gene expression are induced by hepatitis C virus core protein
    • Okuda M, Li K, Beard MR, Showalter LA, Scholle F, Lemon SM, et al. Mitochondrial injury, oxidative stress, and antioxidant gene expression are induced by hepatitis C virus core protein. Gastroenterology 2002;122:366-375.
    • (2002) Gastroenterology , vol.122 , pp. 366-375
    • Okuda, M.1    Li, K.2    Beard, M.R.3    Showalter, L.A.4    Scholle, F.5    Lemon, S.M.6
  • 8
    • 0035859871 scopus 로고    scopus 로고
    • Human hepatitis C virus NS5A protein alters intracellular calcium levels, induces oxidative stress, and activates STAT-3 and NF-kappa B
    • Gong G, Waris G, Tanveer R, Siddiqui A. Human hepatitis C virus NS5A protein alters intracellular calcium levels, induces oxidative stress, and activates STAT-3 and NF-kappa B. Proc Natl Acad Sci U S A 2001;98:9599-9604.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 9599-9604
    • Gong, G.1    Waris, G.2    Tanveer, R.3    Siddiqui, A.4
  • 9
    • 7044222320 scopus 로고    scopus 로고
    • Iron, hemochromatosis, and hepatocellular carcinoma
    • Kowdley KV. Iron, hemochromatosis, and hepatocellular carcinoma. Gastroenterology 2004;127:S79-S86.
    • (2004) Gastroenterology , vol.127
    • Kowdley, K.V.1
  • 10
    • 0034113670 scopus 로고    scopus 로고
    • Successful interferon therapy reverses enhanced hepatic iron accumulation and lipid peroxidation in chronic hepatitis C
    • Kageyama F, Kobayashi Y, Kawasaki T, Toyokuni S, Uchida K, Nakamura H. Successful interferon therapy reverses enhanced hepatic iron accumulation and lipid peroxidation in chronic hepatitis C. Am J Gastroenterol 2000;95:1041-1050.
    • (2000) Am J Gastroenterol , vol.95 , pp. 1041-1050
    • Kageyama, F.1    Kobayashi, Y.2    Kawasaki, T.3    Toyokuni, S.4    Uchida, K.5    Nakamura, H.6
  • 11
    • 0028946727 scopus 로고
    • Iron storage, lipid peroxidation and glutathione turnover in chronic anti-HCV positive hepatitis
    • Farinati F, Cardin R, De Maria N, Della Libera G, Marafin C, Lecis E, et al. Iron storage, lipid peroxidation and glutathione turnover in chronic anti-HCV positive hepatitis. J Hepatol 1995;22:449-456.
    • (1995) J Hepatol , vol.22 , pp. 449-456
    • Farinati, F.1    Cardin, R.2    De Maria, N.3    Della Libera, G.4    Marafin, C.5    Lecis, E.6
  • 13
    • 0029834842 scopus 로고    scopus 로고
    • Iron overload in patients with chronic hepatitis C: A clinicopathologic study
    • Haque S, Chandra B, Gerber MA, Lok AS. Iron overload in patients with chronic hepatitis C: A clinicopathologic study. Hum Pathol 1996;27:1277-1281.
    • (1996) Hum Pathol , vol.27 , pp. 1277-1281
    • Haque, S.1    Chandra, B.2    Gerber, M.A.3    Lok, A.S.4
  • 14
    • 36348935617 scopus 로고    scopus 로고
    • Prevalence of hepatic iron overload and association with hepatocellular cancer in end-stage liver disease: Results from the National Hemochromatosis Transplant Registry
    • Ko C, Siddaiah N, Berger J, Gish R, Brandhagen D, Sterling RK, et al. Prevalence of hepatic iron overload and association with hepatocellular cancer in end-stage liver disease: Results from the National Hemochromatosis Transplant Registry. Liver Int 2007;27:1394-1401.
    • (2007) Liver Int , vol.27 , pp. 1394-1401
    • Ko, C.1    Siddaiah, N.2    Berger, J.3    Gish, R.4    Brandhagen, D.5    Sterling, R.K.6
  • 15
    • 2042546096 scopus 로고    scopus 로고
    • Balancing acts: Molecular control of mammalian iron metabolism
    • Hentze MW, Muckenthaler MU, Andrews NC. Balancing acts: Molecular control of mammalian iron metabolism. Cell 2004;117:285-297.
    • (2004) Cell , vol.117 , pp. 285-297
    • Hentze, M.W.1    Muckenthaler, M.U.2    Andrews, N.C.3
  • 16
    • 33644509858 scopus 로고    scopus 로고
    • Hepatitis C - identifying patients with progressive liver injury
    • Feld JJ, Liang TJ. Hepatitis C - identifying patients with progressive liver injury. HEPATOLOGY 2006;43:S194-S206.
    • (2006) HEPATOLOGY , vol.43
    • Feld, J.J.1    Liang, T.J.2
  • 17
    • 33744512454 scopus 로고    scopus 로고
    • Hepatic iron overload induces hepatocellular carcinoma in transgenic mice expressing the hepatitis C virus polyprotein
    • Furutani T, Hino K, Okuda M, Gondo T, Nishina S, Kitase A, et al. Hepatic iron overload induces hepatocellular carcinoma in transgenic mice expressing the hepatitis C virus polyprotein. Gastroenterology 2006;130: 2087-2098.
    • (2006) Gastroenterology , vol.130 , pp. 2087-2098
    • Furutani, T.1    Hino, K.2    Okuda, M.3    Gondo, T.4    Nishina, S.5    Kitase, A.6
  • 18
    • 10844258104 scopus 로고    scopus 로고
    • Hepcidin regulates cellular iron effiux by binding to ferroportin and inducing its internalization
    • Nemeth E, Tuttle MS, Powelson J, Vaughn MB, Donovan A, Ward DM, et al. Hepcidin regulates cellular iron effiux by binding to ferroportin and inducing its internalization. Science 2004;306:2090-2093.
    • (2004) Science , vol.306 , pp. 2090-2093
    • Nemeth, E.1    Tuttle, M.S.2    Powelson, J.3    Vaughn, M.B.4    Donovan, A.5    Ward, D.M.6
  • 19
    • 33745526068 scopus 로고    scopus 로고
    • Tumour necrosis factor alpha causes hypoferraemia and reduced intestinal iron absorption in mice
    • Laftah AH, Sharma N, Brookes MJ, McKie AT, Simpson RJ, Iqbal TH, et al. Tumour necrosis factor alpha causes hypoferraemia and reduced intestinal iron absorption in mice. Biochem J 2006;397:61-67.
    • (2006) Biochem J , vol.397 , pp. 61-67
    • Laftah, A.H.1    Sharma, N.2    Brookes, M.J.3    McKie, A.T.4    Simpson, R.J.5    Iqbal, T.H.6
  • 21
    • 19944372054 scopus 로고    scopus 로고
    • Upregulation of transferrin receptor 2 and ferroportin 1 mRNA in the liver of patients with chronic hepatitis C
    • Takeo M, Kobayashi Y, Fujita N, Urawa N, Iwasa M, Horiike S, et al. Upregulation of transferrin receptor 2 and ferroportin 1 mRNA in the liver of patients with chronic hepatitis C. J Gastroenterol Hepatol 2005;20:562-569.
    • (2005) J Gastroenterol Hepatol , vol.20 , pp. 562-569
    • Takeo, M.1    Kobayashi, Y.2    Fujita, N.3    Urawa, N.4    Iwasa, M.5    Horiike, S.6
  • 22
    • 0035933846 scopus 로고    scopus 로고
    • IRP1 activation by extracellular oxidative stress in the perfused rat liver
    • Mueller S, Pantopoulos K, Hübner CA, Stremmel W, Hentze MW. IRP1 activation by extracellular oxidative stress in the perfused rat liver. J Biol Chem 2001;276:23192-23196.
    • (2001) J Biol Chem , vol.276 , pp. 23192-23196
    • Mueller, S.1    Pantopoulos, K.2    Hübner, C.A.3    Stremmel, W.4    Hentze, M.W.5
  • 23
    • 34547125378 scopus 로고    scopus 로고
    • Sustained hydrogen peroxide induces iron uptake by transferrin receptor-1 independent of the iron regulatory protein/iron-responsive element network
    • Andriopoulos B, Hegedusch S, Mangin J, Riedel HD, Hebling U, Wang J, et al. Sustained hydrogen peroxide induces iron uptake by transferrin receptor-1 independent of the iron regulatory protein/iron-responsive element network. J Biol Chem 2007;282:20301-20308.
    • (2007) J Biol Chem , vol.282 , pp. 20301-20308
    • Andriopoulos, B.1    Hegedusch, S.2    Mangin, J.3    Riedel, H.D.4    Hebling, U.5    Wang, J.6
  • 24
    • 33745204684 scopus 로고    scopus 로고
    • DNA microarray technology for target identification and validation
    • Jayapal M, Melendez AJ. DNA microarray technology for target identification and validation. Clin Exp Pharmacol Physiol 2006;33:496-503.
    • (2006) Clin Exp Pharmacol Physiol , vol.33 , pp. 496-503
    • Jayapal, M.1    Melendez, A.J.2
  • 25
    • 0036185440 scopus 로고    scopus 로고
    • Microarray analysis of hepatic-regulated gene expression: Specific applications and nonspecific problems
    • Barton MC, Stivers DN. Microarray analysis of hepatic-regulated gene expression: Specific applications and nonspecific problems. HEPATOLOGY 2002;35:727-729.
    • (2002) HEPATOLOGY , vol.35 , pp. 727-729
    • Barton, M.C.1    Stivers, D.N.2
  • 26
    • 4544275336 scopus 로고    scopus 로고
    • Hepatitis C virus NS5A-regulated gene expression and signaling revealed via microarray and comparative promoter analyses
    • Girard S, Vossman E, Misek DE, Podevin P, Hanash S, Brechot C, et al. Hepatitis C virus NS5A-regulated gene expression and signaling revealed via microarray and comparative promoter analyses. HEPATOLOGY 2004;40: 708-718.
    • (2004) HEPATOLOGY , vol.40 , pp. 708-718
    • Girard, S.1    Vossman, E.2    Misek, D.E.3    Podevin, P.4    Hanash, S.5    Brechot, C.6
  • 27
    • 35448940511 scopus 로고    scopus 로고
    • Identification of cellular targets for the human papillomavirus E6 and E7 oncogenes by RNA interference and transcriptome analyses
    • Kuner R, Vogt M, Sultmann H, Buness A, Dymalla S, Bulkescher J, et al. Identification of cellular targets for the human papillomavirus E6 and E7 oncogenes by RNA interference and transcriptome analyses. J Mol Med 2007;85:1253-1262.
    • (2007) J Mol Med , vol.85 , pp. 1253-1262
    • Kuner, R.1    Vogt, M.2    Sultmann, H.3    Buness, A.4    Dymalla, S.5    Bulkescher, J.6
  • 28
    • 25444458298 scopus 로고    scopus 로고
    • Considerations when using the significance analysis of microarrays (SAM) algorithm
    • Larsson O, Wahlestedt C, Timmons JA. Considerations when using the significance analysis of microarrays (SAM) algorithm. BMC Bioinformatics 2005;6:129.
    • (2005) BMC Bioinformatics , vol.6 , pp. 129
    • Larsson, O.1    Wahlestedt, C.2    Timmons, J.A.3
  • 29
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • Pfaffl MW. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 2001;29:e45.
    • (2001) Nucleic Acids Res , vol.29
    • Pfaffl, M.W.1
  • 30
    • 11244315697 scopus 로고    scopus 로고
    • Transcriptional regulation of vascular endothelial cell responses to hypoxia by HIF-1
    • Manalo DJ, Rowan A, Lavoie T, Natarajan L, Kelly BD, Ye SQ, et al. Transcriptional regulation of vascular endothelial cell responses to hypoxia by HIF-1. Blood 2005;105:659-669.
    • (2005) Blood , vol.105 , pp. 659-669
    • Manalo, D.J.1    Rowan, A.2    Lavoie, T.3    Natarajan, L.4    Kelly, B.D.5    Ye, S.Q.6
  • 31
    • 0027136260 scopus 로고
    • Desferrioxamine induces erythropoietin gene expression and hypoxia-inducible factor 1 DNA-binding activity: Implications for models of hypoxia signal transduction
    • Wang GL, Semenza GL. Desferrioxamine induces erythropoietin gene expression and hypoxia-inducible factor 1 DNA-binding activity: implications for models of hypoxia signal transduction. Blood 1993;82:3610-3615.
    • (1993) Blood , vol.82 , pp. 3610-3615
    • Wang, G.L.1    Semenza, G.L.2
  • 32
    • 28644443925 scopus 로고    scopus 로고
    • Iron regulatory protein 1 as a sensor of reactive oxygen species
    • Mueller S. Iron regulatory protein 1 as a sensor of reactive oxygen species. Biofactors 2005;24:171-181.
    • (2005) Biofactors , vol.24 , pp. 171-181
    • Mueller, S.1
  • 33
    • 33846060162 scopus 로고    scopus 로고
    • Exon-based mapping of microarray probes: Recovering differential gene expression signal in underpowered hypoxia experiment
    • Grigoryev DN, Ma SF, Shimoda LA, Johns RA, Lee B, Garcia JG. Exon-based mapping of microarray probes: Recovering differential gene expression signal in underpowered hypoxia experiment. Mol Cell Probes 2007; 21:134-139.
    • (2007) Mol Cell Probes , vol.21 , pp. 134-139
    • Grigoryev, D.N.1    Ma, S.F.2    Shimoda, L.A.3    Johns, R.A.4    Lee, B.5    Garcia, J.G.6
  • 34
    • 33845358660 scopus 로고    scopus 로고
    • The metastasis suppressor, Ndrg-1: A new ally in the fight against cancer
    • Kovacevic Z, Richardson DR. The metastasis suppressor, Ndrg-1: A new ally in the fight against cancer. Carcinogenesis 2006;27:2355-2366.
    • (2006) Carcinogenesis , vol.27 , pp. 2355-2366
    • Kovacevic, Z.1    Richardson, D.R.2
  • 35
    • 14844351853 scopus 로고    scopus 로고
    • Genetics of type 2 diabetes mellitus: Status and perspectives
    • Hansen L, Pedersen O. Genetics of type 2 diabetes mellitus: Status and perspectives. Diabetes Obes Metab 2005;7:122-135.
    • (2005) Diabetes Obes Metab , vol.7 , pp. 122-135
    • Hansen, L.1    Pedersen, O.2
  • 36
    • 34347226273 scopus 로고    scopus 로고
    • ISG20, an actor of the innate immune response
    • Degols G, Eldin P, Mechti N. ISG20, an actor of the innate immune response. Biochimie 2007;89:831-835.
    • (2007) Biochimie , vol.89 , pp. 831-835
    • Degols, G.1    Eldin, P.2    Mechti, N.3
  • 37
    • 36348960622 scopus 로고    scopus 로고
    • Hepatic gene expression during treatment with peginterferon and ribavirin: Identifying molecular pathways for treatment response
    • Feld JJ, Nanda S, Huang Y, Chen W, Cam M, Pusek SN, et al. Hepatic gene expression during treatment with peginterferon and ribavirin: identifying molecular pathways for treatment response. HEPATOLOGY 2007;46: 1548-1563.
    • (2007) HEPATOLOGY , vol.46 , pp. 1548-1563
    • Feld, J.J.1    Nanda, S.2    Huang, Y.3    Chen, W.4    Cam, M.5    Pusek, S.N.6
  • 39
    • 33646588346 scopus 로고    scopus 로고
    • Mig6 is a negative regulator of EGF receptor-mediated skin morphogenesis and tumor formation
    • Ferby I, Reschke M, Kudlacek O, Knyazev P, Pante G, Amann K, et al. Mig6 is a negative regulator of EGF receptor-mediated skin morphogenesis and tumor formation. Nat Med 2006;12:568-573.
    • (2006) Nat Med , vol.12 , pp. 568-573
    • Ferby, I.1    Reschke, M.2    Kudlacek, O.3    Knyazev, P.4    Pante, G.5    Amann, K.6
  • 40
    • 0035813169 scopus 로고    scopus 로고
    • Med9/Cse2 and Gal11 modules are required for transcriptional repression of distinct group of genes
    • Han SJ, Lee JS, Kang JS, Kim YJ. Med9/Cse2 and Gal11 modules are required for transcriptional repression of distinct group of genes. J Biol Chem 2001;276:37020-37026.
    • (2001) J Biol Chem , vol.276 , pp. 37020-37026
    • Han, S.J.1    Lee, J.S.2    Kang, J.S.3    Kim, Y.J.4
  • 41
    • 0013592684 scopus 로고    scopus 로고
    • Activator-specific requirement of yeast mediator proteins for RNA polymerase II transcriptional activation
    • Han SJ, Lee YC, Gim BS, Ryu GH, Park SJ, Lane WS, et al. Activator-specific requirement of yeast mediator proteins for RNA polymerase II transcriptional activation. Mol Cell Biol 1999;19:979-988.
    • (1999) Mol Cell Biol , vol.19 , pp. 979-988
    • Han, S.J.1    Lee, Y.C.2    Gim, B.S.3    Ryu, G.H.4    Park, S.J.5    Lane, W.S.6
  • 42
    • 2442672860 scopus 로고    scopus 로고
    • Systematic analysis of T7 RNA polymerase based in vitro linear RNA amplification for use in microarray experiments
    • Schneider J, Buness A, Huber W, Volz J, Kioschis P, Hafner M, et al. Systematic analysis of T7 RNA polymerase based in vitro linear RNA amplification for use in microarray experiments. BMC Genomics 2004;5:29.
    • (2004) BMC Genomics , vol.5 , pp. 29
    • Schneider, J.1    Buness, A.2    Huber, W.3    Volz, J.4    Kioschis, P.5    Hafner, M.6


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