Phylogeography and historical demography of the Lusitanian snail Elona quimperiana reveal survival in unexpected separate glacial refugia

BMC Evolutionary Biology

Volumn 8, Issue 1, 2008, Pages

  Vialatte, Aude ^a   Guiller, Annie ^a   Bellido, Alain ^a   Madec, Luc ^a  

^a CNRS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME DNA;

ANIMAL; ARTICLE; DNA SEQUENCE; FRANCE; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; HAPLOTYPE; MOLECULAR EVOLUTION; PHYLOGENY; POPULATION DYNAMICS; POPULATION GENETICS; SEQUENCE ALIGNMENT; SNAIL; SPAIN;

ANIMALS; DNA, RIBOSOMAL; EVOLUTION, MOLECULAR; FRANCE; GENETIC VARIATION; GENETICS, POPULATION; GEOGRAPHY; HAPLOTYPES; PHYLOGENY; POPULATION DYNAMICS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SNAILS; SPAIN;

EID: 61849148920     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-8-339     Document Type: Article

References (75)

1. The effect of Quaternary climatic changes on plant distribution and evolution. HP Comes JW Kadereit, Trends Plant Sci 1998 3 432 438
2. Spatial genetic structure of human populations in Japan. RR Sokal BA Thomson, Hum Biol 1998 70 1 22 9489231
3. Genetic differentiation and gene flow among populations of the alpine butterfly, Parnassius smintheus, vary with landscape connectivity. N Keyghobadi J Roland C Strobeck, Mol Ecol 1999 8 1481 1495 10564454
4. Landscape structure and hierarchical genetic diversity in the brook charr, Salvelinus fontinalis. V Castric F Bonney L Bernatchez, Evolution 2001 55 1016 1026 11430638
5. Landscape genetics of alpine-snowbed plants: comparisons along geographic and snowmelt gradients. AS Hirao G Kudo, Heredity 2004 93 290 298 15241452
6. High dispersal in a frog species suggests that it is vulnerable to habitat fragmentation. WC Funk AE Greene PS Corn FW Allendorf, Biol Lett 2005 1 13 16 17148116
7. Patterns, mechanisms and rates of decline among UK invertebrates. JA Thomas MG Morris, Philos Trans R Soc Lond B 1994 344 47 54
8. Genetic analysis of founder bottlenecks in the rare British butterfly Plebejus argus. MI Brookes YA Graneau P King OC Rose CD Thomas JLB Mallet, Conserv Biol 1997 11 648 661
9. Speciation durations and Pleistocene effects on vertebrate phylogeography. JC Avise D Walker GC Johns, Proc R Soc Lond B 1998 265 1407 1707 1712
10. Comparative phylogeography and postglacial colonisation routes in Europe. P Taberlet L Fumagalli A Wust-Saucy J Cosson, Mol Ecol 1998 7 453 464 9628000
11. Post-glacial re-colonisation of European biota. GM Hewitt, Biol J Linn Soc 1999 68 87 112
12. The genetic legacy of the Quaternary ice ages. GM Hewitt, Nature 2000 405 907 913 10879524
13. Genetic consequences of climatic oscillations in the Quaternary. GM Hewitt, Philos Trans R Soc Lond B 2004 359 183 195
14. Some genetic consequences of ice ages, and their role in divergence and speciation. GM Hewitt, Biol J Linn Soc 1996 58 247 276
15. Mitochondrial phylogeography of the woodmouse (Apodemus sylvaticus) in the western Palearctic region. JR Michaux E Magnanou E Paradis C Nieberding RM Libois, Mol Ecol 2003 12 685 697 12675824
16. Refugia within refugia: patterns of phylogeographic concordance in the Iberian Peninsula. A Gomez DH Lunt, Phylogeography of Southern European Refugia, Weiss S, Ferrand N, 2007 155 188 [Netherlands]
17. Stoats (Mustela erminea) provide evidence of natural overland colonisation of Ireland. N Martinkova RA McDonald JB Searle, Proc R Soc Lond B 2007 274 1387 1393
18. Cryptic northern refugia and the origins of the modern biota. JR Stewart AM Lister, Trends Ecol Evol 2001 16 608 613
19. Lusitania revisited: A phylogeographic analysis of the natterjack toad Bufo calamita across its entire biogeographical range. G Rowe DJ Harris TJC Beebee, Mol Phylogenet Evol 2006 39 2 335 346 16230033
20. Investigation of the relationship between permafrost distribution in NW Europe and extensive winter sea-ice cover in the North Atlantic Ocean during the cold phases of the Last Glaciation. H Renssen J Vandenberghe, Quat Sci Rev 2003 22 209 223
21. Late glacial history of the cold-adapted freshwater Cottus gobio, revealed by microsatellites. B Hanfling B Hellemans FAM Volckaert R Carvalho, Mol Ecol 2002 11 1717 1729 12207722
22. Plant Life of the Quaternary Cold Stages. RG West, Cambridge University Press 2000
23. Conservation genetics and populations history of the threatened European mink Mustela lutreola, with emphasis on the west European population. JR Michaud OJ Hardy F Justy P Fournier A Kranz M Cabria A Davison R Rosoux R Libois, Mol Ecol 2005 14 2373 2388 15969721
24. New biostratigraphic evidence of the post-glacial colonisation of Ireland and for Mesolithic forest disturbance. RC Preece P Coxon JE Robinson, J Biogeogr 1986 13 487 509
25. On Elona (Pulmonata, Elonidae Fam. Nov). E Gittenberger, Malacologia 1979 18 139 145
26. Revision de las especies ibericas de la familia Xanthonychidae (Gastropoda Pulmonata: Helicoidea). AI Puente K Altonaga, Butll Inst Cat Hist Nat 1995 63 85 101
27. La faune terrestre lusitanienne. E Caziot, Ann Soc Linn Lyon 1915 62 43 65
28. The Biogeography of the British Isles. P Vincent, Routledge, London 1990
29. Contribution l'écologie d'Elona quimperiana (de Férussac) (Gastéropode Pulmoné Stylommathophore) en Bretagne occidentale. J Daguzan JC Gloaquen, Haliotis 1986 15 17 30
30. Similarity of vegetation dynamics during interglacial periods. R Cheddadi JL de Beaulieu J Jouzel V Andrieu-Ponel J-M Laurent M Reille D Raynaud A Bar-Hen, Proc Natl Acad Sci USA 2005 102 13939 13943 16162676
31. Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution. HC Harpending, Hum Biol 1994 66 591 600 8088750
32. Small edge populations at risk: genetic diversity of the green lizard (Lacerta viridis viridis) in Germany and implications for conservation management. MU Böhme N Schneeweiss U Fritz M Schlegel TU Berendonk, Conserv Genet 2007 8 555 563
33. Speciation and paraphylogeny in Western Mediterranean hares (Lepus castroviejoi, L. europaeus, L. granatensis and L. capensis) revealed by mitochondrial DNA phylogeny. G Pérez-Suárez F Palacios P Boursot, Biochem Genet 1994 32 423 436 7748159
34. Refuge areas and suture zones in the Pyrenean and Cantabrian regions: geographic variation of the female MPI sex-linked alleles among oviparous populations of the lizard Lacerta (Zootoca) vivipara. GP Guillaume B Heulin MJ Arrayago A Bea F Brana, Ecography 2000 23 3 10
35. Mitochondrial sequence analysis of Salamandra taxa suggests old splits of major lineages and postglacial recolonizations of Central Europe from distinct source populations of Salamandra salamandra. S Steinfartz M Veith D Tautz, Mol Ecol 2000 9 397 410 10736043
36. Chloroplast DNA diversity in Calluna vulgaris (heather) populations in Europe. S Rendell RA Ennos, Mol Ecol 2002 11 69 78 11903905
37. Dispersal of viviparity across contact zones in Iberian populations of fire salamanders (Salamandra) inferred from discordance of genetic and morphological traits. M García-París M Alcobendas D Buckley DB Wake, Evolution 2003 57 129 143 12643573
38. The geographical distribution of genetic variation in silver fir (Abies alba, Pinaceae) in relation to its migration history. M Konnert F Bergmann, Plant Syst Evol 1995 196 19 30
39. Delimitation of Biogeographical Areas in the Iberian Peninsula on the Basis of Helicoidea Species (Pulmonata: Stylommatophora). AI Puente K Altonaga CE Prieto A Rallo, Glob Ecol Biogeogr Lett 1998 7 97 113
40. Trois cent ans d'histoire au Pays basque (Urrugne, Socoa, Béhobie, Hendayes, Biriatou). J Fourcade, 1901 Editions, France 1967
41. The population genetic consequences of habitat fragmentation for plants. A Young T Boyle T Brown, Trends Ecol Evol 1996 11 413 418
42. High selfing and high inbreeding depression in peripherl populations of Juncus atratus. S Mishalski W Durka, Mol Ecol 2007 16 22 4715 4727 17927705
43. Contrasting patterns of population subdivision and historical demography in three western Mediterranean lizard species inferred from mitochondrial DNA variation. C Pinho DJ Harris N Ferrand, Mol Ecol 2007 16 1191 1205 17391406
44. The full-glacial forests of Central and Southeastern Europe. KJ Willis, Quat Res 2000 53 203 213
45. The influence of changing orbital parameters and surface boundary conditions on climate simulations for the past 18,000 years. JF Kutzbach PJ Guetter, J Atmosph Sci 1986 43 1726 1759
46. Fauna cavernicola i intersticial de la Peninsula Ibèrica i les Illes Balears. X Belles, Monografie scientifiques, 4 Consell Superior d'Investigacions Cientifiques & Editorial Moll, Mallorca 1987
47. Using chloroplast DNA to trace postglacial migration routes of oaks into Britain. C Ferris RP Oliver AJ Davy GM Hewitt, Mol Ecol 1995 4 731 738 8564011
48. L'évolution de la fort française après la dernière glaciation: l'apport de la palynologie, l'archéologie et de la biologie moléculaire. B Demesure J Mush, Les Dossiers de l'Environnement de l'INRA 2001 21 23 28
49. Extreme divergence of mitochondrial DNA within species of pulmonate land snails. D Thomaz A Guiller B Clarke, Proc R Soc Lond B 1996 263 363 368
50. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. O Folmer M Black W Hoeh R Lutz R Vrijenhoek, Mol Mar Biol Biotechnol 1994 3 294 299 7881515
51. The Pleistocene glaciations and the evolutionary history of the polytypic snail species Arianta arbustorum (Gastropoda, Pulmonata, Helicidae). E Gittenberger WH Piel DSJ Groenenberg, Mol Phyl Evol 2004 30 64 73
52. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. JD Thompson DG Higgins TJ Gibson, Nucleic Acids Res 1994 22 4673 4680 7984417
53. BIOEDIT: a user friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. TA Hall, Nucleic Acids Symp Ser 1999 41 95 98
54. DnaSP, DNA polymorphism analyses by the coalescent and other methods. J Rozas JC Sánchez-DelBarrio X Messeguer R Rozas, Bioinformatics 2003 19 2496 2497 14668244
55. S Schneider D Roessli L Excofier, Arlequin, Version 2.0: a software for population genetic data analysis Genetics and Biometry Laboratory, University of Geneva, Geneva 2000
56. DL Swofford, PAUP* 4.0b Sinauer Associates, Sunderland, MA 2002
57. MRBAYES: Bayesian inference of phylogenetic trees. JP Huelsenbeck F Ronquist, Bioinformatics 2000 17 8 754 755
58. Information theory and an extension of the maximum likelihood principle. H Akaike, Second International Symposium on Information Theory, Petrov BN, Csaki F, 1973 267 281 [Akademiai Kiado, Budapest]
59. Bayesian phylogenetic analysis of combined data. JAA Nylander F Ronquist JP Huelsenbeck JL Nieves-Aldrey, Syst Biol 2004 53 47 67 14965900
60. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Felsenstein, J Mol Evol 1981 17 368 376 7288891
61. Phylogenetic relationships among eukaryotic kingdoms inferred from ribosomal RNA sequences. M Hasegawa Y Iida T Yano F Takaiwa M Iwabuchi, J Mol Evol 1985 22 32 38 3932662
62. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. S Guindon O Gascuel, Syst Biol 2003 52 696 704 14530136
63. Modeltest: testing the model of DNA substitution. D Posada KA Crandall, Bioinformatics 1998 14 817 818 9918953
64. Median-joining networks for inferring intraspecific phylogenies. H-J Bandelt P Forster A Röhl, Mol Biol Evol 1999 16 37 48 10331250
65. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. YX Fu, Genetics 1997 147 915 925 9335623
66. Statistical properties of new neutrality tests against population growth. SE Ramos-Onsins J Rozas, Mol Biol Evol 2002 19 2092 2100 12446801
67. Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. M Slatkin RR Hudson, Genetics 1991 129 555 562 1743491
68. Population-growth makes waves in the distribution of pairwise genetic-differences. AR Rogers H Harpending, Mol Biol Evol 1992 9 552 569 1316531
69. AJ Drummond A Rambaut, BEAST, version 1.3 University of Oxford, Oxford, UK 2005
70. Age, phylogeography and population structure of the microendemic banded spring snail, Mexipyrgus churinceanus. SG Johnson, Mol Ecol 2005 14 2299 2311 15969715
71. Integrated palaeontological and molecular phylogenetic approaches to the study of phylogeny: a case study of Umbonium (Gastropoda). R Ozawa K Okamoto, Chikyu Month 1993 15 589 595 (In Japanese)
72. Reconstruction of phylogeny of 11 species of Littorina (Gastropoda: Littorinidae) using mitochondrial DNA sequence data. E Rumbak DG Reid RH Thomas, The Nautilus Suppl 1994 2 91 97
73. Accelerated evolution of land snails Mandarina in the oceanic Bonin Islands: evidence from mitochondrial DNA sequences. S Chiba, Evolution 1999 53 460 471
74. Fossil calibration of molecular clocks and the divergence times of geminate species pairs separated by the Isthmus of Panama. PB Marko, Mol Biol Evol 2002 19 11 2005 2021 12411609
75. The Museum of Natural History. Elona quimperiana (Férussac 1821) http://www.mnhn.fr/