The basidiomycetous mushroom Lentinula edodes white collar-2 homolog PHRB, a partner of putative blue-light photoreceptor PHRA, binds to a specific site in the promoter region of the L. edodes tyrosinase gene

Fungal Genetics and Biology

Volumn 46, Issue 4, 2009, Pages 333-341

  Sano, Hiroaki ^a   Kaneko, Shinya ^a   Sakamoto, Yuichi ^b   Sato, Toshitsugu ^b   Shishido, Kazuo ^a  

^a TOKYO INSTITUTE OF TECHNOLOGY   (Japan)

^b IWATE BIOTECHNOLOGY RESEARCH CENTER   (Japan)

Author keywords

Electrophoretic mobility shift assay; GST pulldown immunoblotting; Lentinula edodes; Light induction; Melanin biosynthesis; Random binding site selection analysis; RT PCR; Target gene; Tyrosinase; White collar proteins

Indexed keywords

AMINO ACID; COMPLEMENTARY DNA; MONOPHENOL MONOOXYGENASE;

ARTICLE; BINDING SITE; BLUE LIGHT; CONTROLLED STUDY; DNA ISOLATION; ESCHERICHIA COLI; GEL MOBILITY SHIFT ASSAY; GENE EXPRESSION; IMMUNOBLOTTING; LENTINUS EDODES; MUSHROOM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHOTORECEPTOR; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN DOMAIN; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY; ZINC FINGER MOTIF;

AMINO ACID SEQUENCE; BINDING SITES; CLONING, MOLECULAR; DNA, FUNGAL; DNA-BINDING PROTEINS; ELECTROPHORETIC MOBILITY SHIFT ASSAY; ESCHERICHIA COLI; FUNGAL PROTEINS; GENE EXPRESSION REGULATION, FUNGAL; GENES, FUNGAL; MOLECULAR SEQUENCE DATA; MONOPHENOL MONOOXYGENASE; PHOTORECEPTORS, MICROBIAL; PROMOTER REGIONS, GENETIC; PROTEIN BINDING; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; SHIITAKE MUSHROOMS; TRANSCRIPTION FACTORS;

BASIDIOMYCOTA; ESCHERICHIA COLI; LENTINULA EDODES; NEUROSPORA CRASSA;

EID: 61449195613     PISSN: 10871845     EISSN: 10960937     Source Type: Journal    
DOI: 10.1016/j.fgb.2009.01.001     Document Type: Article

References (36)

1. Akiyama R., Sato Y., Kajiwara S., and Shishido K. Cloning and expression of cytochrome P450 genes, belonging to a new P450 family, of the basidiomycete Lentinnula edodes. Biosci. Biotechnol. Biochem. 66 (2002) 2183-2188
2. Ambra R., Grimaldi B., Zamboni S., Filetici P., Macino G., and Ballario P. Photomorphogenesis in the hypogeous fungus Tuber borchii: isolation and characterization of Tbwc-1, the homologue of the blue-light photoreceptor for Neurospora crassa. Fungal Genet. Biol. 41 (2004) 688-697
3. Ballario P., Talora C., Galli D., Linden H., and Macino G. Roles in dimerization and blue light photoresponse of the PAS and LOV domains of Neurospora crassa white collar proteins. Mol. Microbiol. 29 (1998) 719-729
4. Ballario P., Vittorioso P., Magrelli A., Talora C., Cabibbo A., and Macino G. White collar-1, a central regulator of blue light responses in Neurospora, is a zinc finger protein. EMBO J. 15 (1996) 1650-1657
5. Casas-Flores S., Rios-Momberg M., Bibbins M., Ponce-Noyola P., and Herrela-Estrella A. BLR-1 and BLR-2, key regulatory elements of photoconidiation and mycelial growth in Trichoderma atroviride. Microbiology 150 (2004) 3561-3569
6. Cashmore A.R., Jarillo J.A., Wu Y.J., and Liu D. Cryptochromes: blue light receptors for plants and animals. Science 284 (1999) 760-765
7. Cheng P., Yang Y., Gardner K.H., and Liu Y. PAS-domain-mediated WC-1/WC-2 interaction is essential for maintaining the steady-state level of WC-1 and function of both proteins in circadian clock and light responses of Neurospora. Mol. Cell. Biol. 22 (2002) 517-524
8. Cheng P., Yang Y., Wang L., He Q., and Liu Y. White Collar-1, multifunctional Neurospora protein involved in the circadian feedback loops, light sensing, and transcription repression of wc-2. J. Biol. Chem. 278 (2003) 3801-3808
9. Denault D.L., Loros J.J., and Dunlap J.C. WC-2 mediates WC-1-PRQ interaction within the PAS protein-linked circadian feedback loop of Neurospora. EMBO J. 20 (2001) 109-117
10. Donald R.G., and Cashmore A.R. Mutation of either G box or I box sequences profoundly affects expression from the Arabidopsis rbcS-1A promoter. EMBO J. 9 (1990) 1717-1726
11. Froehlich A.C., Liu Y., Loros J.J., and Dunlap J.C. White collar-1, a circadian blue light photoreceptor, binding to the frequency promoter. Science 297 (2002) 815-819
12. Giuliano G., Pichersky E., Malik V.S., Timko M.P., Scolnik P.A., and Cashmore A.R. An evolutionarily conserved protein binding sequence upstream of a plant light-regulated gene. Proc. Natl. Acad. Sci. USA 85 (1988) 7089-7093
13. Han J.H., Stratowa C., and Rutter W.J. Isolation of full-length putative rat lysophospholipase cDNA using improved methods for mRNA isolation and cDNA cloning. Biochemistry 26 (1987) 1617-1625
14. He Q., Cheng P., Yang Y., Wang L., Gardner K.H., and Liu Y. White collar-1, a DNA-binding transcription factor and a light sensor. Science 297 (2002) 840-843
15. He Q., and Liu Y. Molecular mechanism of light responses in Neurospora: from light-induced transcription to photoadaptation. Genes Dev. 19 (2005) 2888-2899
16. Herrera-Estrella A., and Horwitz B.A. Looking through the eyes of fungi: molecular genetics of photoreception. Mol. Microbiol. 64 (2007) 5-15
17. Hori K., Kajiwara S., Saito T., Miyazawa H., Katayose Y., and Shishido K. Cloning, sequence analysis and transcriptional expression of a ras gene of the edible basidiomycete Lentinus edodes. Gene 105 (1991) 91-96
18. 4-type zinc finger peptide. Nucl. Acids Symp. Ser. 44 (2000) 295-296
19. Huala E., Oeller P.W., Liscum E., Han I.S., Larsen E., and Briggs W.R. Arabidopsis NPH1: a protein kinase with a putative redox-sensing domain. Science 278 (1997) 2120-2123
20. Idnurm A., and Heitman J. Light controls growth and development via a conserved pathway in the fungal kingdom. PLoS. Biol. 3 (2005) e95
21. Idnurm A., Rodriguez-Romero J., Corrochano L.M., Sanz C., Iturriaga E.A., Eslava A.P., and Heitman J. The Phycomyces madA gene encodes a blue-light photoreceptor for phototropism and other light responses. Proc. Natl. Acad. Sci. USA 103 (2006) 4546-4551
22. Kaneko S., and Shishido K. Cloning and sequence analysis of the basidiomycete Lentinula edodes ribonucleotide reductase small subunit cDNA and expression of a corresponding gene in L. Edodes. Gene 262 (2001) 43-50
23. Katayose Y., Kajiwara S., and Shishido K. The basidiomycete Lentinula edodes linear mitochondrial DNA plasmid contains a segment exhibiting a high autonomously replicating activity in Saccharomyces cerevisiae. Nucl. Acids Res. 18 (1990) 1395-1400
24. Linden H., and Macino G. White collar 2, a partner in blue-light signal transduction, controlling expression of light-regulated genes in Neurospora crassa. EMBO J. 16 (1997) 98-109
25. + from the mushroom Lentinula edodes: characterization of the cDNA and its expressed product. Biochim. Biophys. Acta 1680 (2004) 93-102
26. Miyazaki Y., Tsunoka O., and Shishido K. Determination of the DNA-binding sequences of the Zn (II) 2Cys6 zinc-cluster-containing PRIB protein derived from the basidiomycete Lentinus edodes gene. J. Biochem. 122 (1997) 1088-1091
27. Nakazawa T., Kaneko S., Miyazaki Y., Jojima T., Yamazaki T., Katsukawa S., and Shishido K. Basidiomycete Lentinula edodes CDC5 and a novel interacting protein CIPB bind to a newly isolated target gene in an unusual manner. Fungal Genet. Biol. 45 (2008) 818-828
28. Nelson M.A., Morelli G., Carattoli A., Romano N., and Macino G. Molecular cloning of a Neurospora crassa carotenoid biosynthetic gene (albino-3) regulated by blue light and the products of the white collar genes. Mol. Cell. Biol. 9 (1989) 1271-1276
29. Pollock R., and Treisman R. A sensitive method for the determination of protein-DNA binding specificities. Nucl. Acids Res. 18 (1990) 6197-6204
30. Purschwitz J., Muller S., Kastner C., and Fischer R. Seeing the rainbow: light sensing in fungi. Curr. Opin. Microbiol. 9 (2006) 566-571
31. Sano H., Narikiyo T., Kaneko S., Yamazaki T., and Shishido K. Sequence analysis and expression of a blue-light photoreceptor gene, phrA from the basidiomycetous mushroom Lentinula edodes. Biosci. Biotechnol. Biochem. 71 (2007) 2206-2213
32. Silva F., Torres-Martinez S., and Garre V. Distinct white collar-1 genes control specific light responses in Mucor circinelloides. Mol. Microbiol. 61 (2006) 1023-1037
33. Takagi Y., Katayose Y., and Shishido K. Intracellular levels of cyclic AMP and adenylate cyclase activity during mycelial development in fruiting-body formation in L. edodes. FEMS Microbiol. Lett. 55 (1988) 275-278
34. Talora C., Franchi L., Linden H., Ballario P., and Macino G. Role of a white collar-1-white collar-2 complex in blue-light signal transduction. EMBO J. 18 (1999) 4961-4968
35. Taylor B.L., and Zhulin I.B. PAS domains: internal sensors of oxygen, redox potential, and light. Microbiol. Mol. Biol. Rev. 63 (1999) 479-506
36. Terashima K., Yuki K., Muraguchi H., Akiyama M., and Kamada T. The dst1 gene involved in mushroom photomorphogenesis of Coprinus cinereus encodes a putative photoreceptor for blue light. Genetics 171 (2005) 101-108