Basidiomycete Lentinula edodes CDC5 and a novel interacting protein CIPB bind to a newly isolated target gene in an unusual manner

Fungal Genetics and Biology

Volumn 45, Issue 6, 2008, Pages 818-828

  Nakazawa, Takehito ^a   Kaneko, Shinya ^a   Miyazaki, Yasumasa ^a   Jojima, Toru ^a   Yamazaki, Takashi ^a   Katsukawa, Shiho ^a   Shishido, Kazuo ^a  

^a Tokyo Institute of Technology ^*  (Japan)

Author keywords

Basidiomycetous mushroom; Binding site selection analysis; Chromatin immunoprecipitation assay; GST pulldown; Immunoblot analysis; Le.CDC5; Lentinula edodes; Sp.cdc5p related protein; Target gene; Transcription cis element; Yeast two hybrid analysis

Indexed keywords

AMINO ACID; CDC5 PROTEIN; CIPA PROTEIN; CIPB PROTEIN; CTG1 PROTEIN; FUNGAL PROTEIN; LEUCINE; TRANSCRIPTION FACTOR;

ARTICLE; BASIDIOMYCETES; CHROMATIN IMMUNOPRECIPITATION; CONSENSUS SEQUENCE; CONTROLLED STUDY; DNA BINDING; GENE EXPRESSION; GENE IDENTIFICATION; GENE SEQUENCE; IN VITRO STUDY; LENTINUS EDODES; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN BINDING; PROTEIN INTERACTION;

AMINO ACID SEQUENCE; BASE SEQUENCE; CLONING, MOLECULAR; DNA, FUNGAL; DNA-BINDING PROTEINS; FRUITING BODIES, FUNGAL; FUNGAL PROTEINS; FUNGI; GENE EXPRESSION REGULATION, FUNGAL; GENE LIBRARY; GENES, FUNGAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; PROTEIN BINDING; SEQUENCE HOMOLOGY, AMINO ACID; SHIITAKE MUSHROOMS; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC; TWO-HYBRID SYSTEM TECHNIQUES;

BASIDIOMYCOTA; LENTINULA EDODES;

EID: 43049176513     PISSN: 10871845     EISSN: 10960937     Source Type: Journal    
DOI: 10.1016/j.fgb.2008.02.007     Document Type: Article

References (29)

1. Ajuh P., Kuster B., Panov K., Zomerdijk J.C., Mann M., and Lamond A.I. Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry. EMBO J. 19 (2000) 6569-6581
2. Bernstein H.S., and Coughlin S.R. Pombe Cdc5-related protein. A putative human transcription factor implicated in mitogen-activated signaling. J. Biol. Chem. 272 (1997) 5833-5837
3. Bernstein H.S., and Coughlin S.R. A mammalian homolog of fission yeast cdc5 regulates G2 progression and mitotic entry. J. Biol. Chem. 273 (1998) 4666-4671
4. Burns C.G., Ohi R., Krainer A.R., and Gould K.L. Evidence that Myb-related CDC5 proteins are required for pre-mRNA splicing. Proc. Natl. Acad. Sci. USA 96 (1999) 13789-13794
5. Fields S., and Song O. A novel genetic system to detect protein-protein interactions. Nature 340 (1989) 245-246
6. Hagerman P.J. Sequence-dependent curvature of DNA. In: Wells R.D., and Harvey S.C. (Eds). Unusual DNA Structures (1988), Springer-Verlag, New York 225-236
7. + homolog of a higher plant Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 93 (1996) 13371-13376
8. Hori K., Kajiwara S., Saito T., Miyazawa H.Y., Katayose Y., and Shishido K. Cloning, sequence analysis and transcriptional expression of a ras gene of the edible basidiomycete Lentinus edodes. Gene 105 (1991) 91-96
9. Inoue S., Kondo S., Hashimoto M., Kondo T., and Muramatsu M. Isolation of estrogen receptor-binding sites in human genomic DNA. Nucleic Acids Res. 19 (1991) 4091-4096
10. Kanei-Ishii C., MacMillan E.M., Nomura T., Sarai A., Ramsay R.G., Aimoto S., Ishii S., and Gonda T.J. Transactivation and transformation by Myb are negatively regulated by a leucine-zipper structure. Proc. Natl. Acad. Sci. USA 89 (1992) 3088-3092
11. Kaneko S., and Shishido K. Cloning and sequence analysis of the basidiomycete Lentinus edodes ribonucleotide reductase small subunit cDNA and expression of a corresponding gene in L. edodes. Gene 262 (2001) 43-50
12. Kaneko S., Miyazaki Y., Yasuda T., and Shishido K. Cloning, sequence analysis and expression of the basidiomycete Lentinus edodes gene uck1, encoding UMP-CMP kinase, the homologue of Saccharomyces cerevisiae URA6 gene. Gene 211 (1998) 259-266
13. Katayose Y., Kajiwara S., and Shishido K. The basidiomycete Lentinus edodes linear mitochondrial DNA plasmid contains a segment exhibiting a high autonomously replicating sequence activity in Saccharomyces cerevisiae. Nucleic Acids Res. 18 (1990) 1395-1400
14. Katsukawa S., and Shishido K. Analysis of recQ gene transcript in fruiting bodies of basidionycetous mushroom Lentinula edodes. Biosci. Biotechnol. Biochem. 69 (2005) 2247-2249
15. Kuo M.H., and Allis C.D. In vivo cross-linking and immunoprecipitation for studying dynamic protein:DNA associations in a chromatin environment. Methods 19 (1999) 425-433
16. Lei X.H., Shen X., Xu X.Q., and Bernstein H.S. Human Cdc5, a regulator of mitotic entry, can act as a site-specific DNA binding protein. J. Cell Sci. 113 (2000) 4523-4531
17. Li B., and Fields S. Identifications in p53 that affects its binding SV40T antigen by using the yeast two-hybrid system. FASEB J. 7 (1993) 957-963
18. McDonald W.H., Ohi R., Smelkova N., Frendewey D., and Gould K.L. Myb-related fission yeast cdc5p is a component of a 40 snRNP-containing complex and is essential for pre-mRNA splicing. Mol. Cell. Biol. 19 (1999) 5352-5362
19. + from the mushroom Lentinula edodes: characterization of the cDNA and its expressed product. Biochim. Biophys. Acta 1680 (2004) 93-102
20. Miyazaki Y., Tsunoka O., and Shishido K. Determination of the DNA-binding sequences of the Zn(II)2Cys6 zinc-cluster-containing PRIB protein, derived from the basidiomycete Lentinus edodes gene. J. Biochem. 122 (1997) 1088-1091
21. Nakajima M., Sheikh Q.I., Yamaoka K., Yui Y., Kajiwara S., and Shishido K. Bending of DNA segments with Saccharomyces cerevisiae autonomously replicating sequence activity, isolated from basidiomycete mitochondrial linear plasmids. Mol. Gen. Genet. 273 (1993) 1-9
22. Nakazawa T., Miyazaki Y., Kaneko S., and Shishido K. Developmental regulator Le.CDC5 of the mushroom Lentinula edodes: analyses of its amount in each of the stages of fruiting-body formation and its distribution in parts of the fruiting bodies. FEMS Microbiol. Lett. 261 (2006) 60-63
23. Nomura T., Sakai N., Sarai A., Sudo T., Kanei-Ishii C., Ramsay R.G., Favier D., Gonda T.J., and Ishii S. Negative autoregulation of c-Myb activity by homodimer formation through the leucine zipper. J. Biol. Chem. 268 (1993) 21914-21923
24. Ohi R., Feoktistova A., McCann S., Valentine V., Look A.T., Lipsick J.S., and Gould K.L. Myb-related Schizosaccharomyces pombe cdc5p is structurally and functionally conserved in eukaryotes. Mol. Cell. Biol. 18 (1998) 4097-4108
25. + gene encodes an essential protein with homology to c-Myb. EMBO J. 13 (1994) 471-483
26. Orlando V., Strutt H., and Paro R. Analysis of chromatin structure by in vivo formaldehyde cross-linking. Methods 11 (1997) 205-214
27. Pollock R., and Treisman R. A sensitive method for the determination of protein-DNA binding specificities. Nucleic Acids Res. 18 (1990) 6197-6204
28. Trifonov E.N., and Ulanovsky L.E. Inherently curved DNA and its structural elements. In: Wells R.D., and Harvey S.C. (Eds). Unusual DNA Structures (1988), Springer-Verlag, New York 173-187
29. Tsai W.Y., Chow Y.T., Chen H.R., Huang K.T., Hong R.I., Jan S.P., Kuo N.Y., Tsao T.Y., Chen C.H., and Cheng S.C. Cef1p is a component of the Prp19-associated complex and essential for pre-mRNA splicing. J. Biol. Chem. 274 (1999) 9455-9462