Pentameric Assembly of Potassium Channel Tetramerization Domain-Containing Protein 5

Journal of Molecular Biology

Volumn 387, Issue 1, 2009, Pages 175-191

  Dementieva, Irina S ^a   Tereshko, Valentina ^a   McCrossan, Zoe A ^a   Solomaha, Elena ^a   Araki, Daniel ^a   Xu, Chen ^b   Grigorieff, Nikolaus ^b   Goldstein, Steve A N ^a  

^a UNIVERSITY OF CHICAGO   (United States)

^b BRANDEIS UNIVERSITY   (United States)

Author keywords

BTB; GRASP55; KCTD5; Kv channel; T1 domain

Indexed keywords

AMINO ACID; POTASSIUM CHANNEL; POTASSIUM CHANNEL KV1.2; SHAL POTASSIUM CHANNEL; SHAW POTASSIUM CHANNEL; TETRAMERIZATION DOMAIN CONTAINING PROTEIN 5; UNCLASSIFIED DRUG;

ARTICLE; ELECTRON MICROSCOPY; ELECTROPHYSIOLOGY; GOLGI COMPLEX; HUMAN; HUMAN CELL; IMMUNOPRECIPITATION; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN STRUCTURE; SCANNING TRANSMISSION ELECTRON MICROSCOPY; STOICHIOMETRY; ULTRACENTRIFUGATION; X RAY CRYSTALLOGRAPHY;

EID: 61349202109     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2009.01.030     Document Type: Article

References (44)

1. + channel assembly. Neuron 11 (1993) 67-76
2. + channels. Biophys. J. 66 (1994) 667-673
3. Bardwell V.J., and Treisman R. The POZ domain: a conserved protein-protein interaction motif. Genes Dev. 8 (1994) 1664-1677
4. Zollman S., Godt D., Prive G.G., Couderc J., and Laski F.A. The BTB domain, found primarily in zinc finger proteins, defines an evolutionarily conserved family that includes several developmentally regulated genes in Drosophila. Proc. Natl Acad. Sci. 91 (1994) 10717-10721
5. Marchler-Bauer A., Anderson J.B., Derbyshire M.K., DeWeese-Scott C., Gonzales N.R., Gwadz M., et al. CDD: a conserved domain database for interactive domain family analysis. Nucleic Acids Res. 35 (2007) D237-D240
6. Abbott G.W., and Goldstein S.A.N. A superfamily of small potassium channel subunits: form and function of the MinK-related peptides (MiRPs). Q. Rev. Biophys. 31 (1998) 357-398
7. Stogios P., Downs G., Jauhal J., Nandra S., and Prive G. Sequence and structural analysis of BTB domain proteins. Genome Biol. 6 (2005) R82
8. Gamse J.T., Kuan Y.-S., Macurak M., Brosamle C., Thisse B., Thisse C., et al. Directional asymmetry of the zebrafish epithalamus guides dorsoventral innervation of the midbrain target. Development 132 (2005) 4869-4881
9. Resendes B.L., Kuo S.F., Robertson N.G., Giersch A.B.S., Honrubia D., Ohara O., et al. Isolation from cochlea of a novel human intronless gene with predominant fetal expression. J. Assoc. Res. Otolaryngol. 5 (2004) 185-202
10. Di Marcotullio L., Ferretti E., De Smaele E., Argenti B., Mincione C., Zazzeroni F., et al. REN/KCTD11 is a suppressor of Hedgehog signaling and is deleted in human medulloblastoma. Proc. Natl Acad. Sci. 101 (2004) 10833-10838
11. Zawlik I., Zakrzewska M., Witusik M., Golanska E., Kulczycka-Wojdala D., Szybka M., et al. KCTD11 expression in medulloblastoma is lower than in adult cerebellum and higher than in neural stem cells. Cancer Genet. Cytogenet. 170 (2006) 24-28
12. Van Bogaert P., Azizieh R., Désir J., Aeby A., De Meirleir L., Florence J.-F., et al. Mutation of a potassium channel-related gene in progressive myoclonic epilepsy. Ann. Neurol. 61 (2007) 579-586
13. Gandhi T.K., Zhong J., Mathivanan S., Karthick L., Chandrika K.N., Mohan S.S., et al. Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets. Nat. Genet. 38 (2006) 285-293
14. Grigoryan G., and Keating A.E. Structural specificity in coiled-coil interactions. Curr. Opin. Struct. Biol. 18 (2008) 477-483
15. + channels. Nat. Struct. Biol. 6 (1999) 38-43
16. Holm L., and Sander C. The FSSP database: fold classification based on structure-structure alignment of proteins. Nucleic Acids Res. 24 (1996) 206-209
17. Li X., Romero P., Rani M., Dunker A.K., and Obradovic Z. Predicting protein disorder for N-, C-, and internal regions. Genome Inf. 10 (1999) 30-40
18. Li X., Peng H., Schultz D.C., Lopez-Guisa J.M., Rauscher III F.J., and Marmorstein R. Structure-function studies of the BTB/POZ transcriptional repression domain from the promyelocytic leukemia zinc finger oncoprotein. Cancer Res. 59 (1999) 5275-5282
19. Bayón Y., Trinidad A.G., de la Puerta M.L., Del Carmen Rodríguez M., Bogetz J., Rojas A., et al. KCTD5, a putative substrate adaptor for cullin3 ubiquitin ligases. FEBS J. 15 (2008) 3900-3910
20. Nanao M.H., Zhou W., Pfaffinger P.J., and Choe S. Determining the basis of channel-tetramerization specificity by X-ray crystallography and a sequence-comparison algorithm: family values (FamVal). Proc. Natl Acad. Sci. 100 (2003) 8670-8675
21. Barr F.A., Puype M., Vandekerckhove J., and Warren G. GRASP65, a protein involved in the stacking of Golgi cisternae. Cell 91 (1997) 253-262
22. Shorter J., Watson R., Giannakou M.E., Clarke M., Warren G., and Barr F.A. GRASP55, a second mammalian GRASP protein involved in the stacking of Golgi cisternae in a cell-free system. EMBO J. 18 (1999) 4949-4960
23. + channel-interacting protein 2. J. Biol. Chem. 279 (2004) 5549-5554
24. Kim L.A., Furst J., Gutierrez D., Butler M.H., Xu S., Goldstein S.A., et al. Three-dimensional structure of I(to); Kv4.2-KChIP2 ion channels by electron microscopy at 21 angstrom resolution. Neuron 41 (2004) 513-519
25. Koide A., Gilbreth R.N., Esaki K., Tereshko V., and Koide S. High-affinity single-domain binding proteins with a binary-code interface. Proc. Natl Acad. Sci. USA 104 (2007) 6632-6637
26. Sidhu S.S., and Kossiakoff A.A. Exploring and designing protein function with restricted diversity. Curr. Opin. Chem. Biol. 11 (2007) 347-354
27. Weger S., Hammer E., Götz A., and Heilbronn R. Identification of a cytoplasmic interaction partner of the large regulatory proteins Rep78/Rep68 of adeno-associated virus type 2 (AAV-2). Virology 362 (2007) 192-206
28. Van Duyne G.D., Standaert R.F., Karplus P.A., Schreiber S.L., and Clardy J. Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin. J. Mol. Biol. 229 (1993) 105-204
29. Otwinowski Z., and Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276 (1997) 307-326
30. Schneider T.R., and Sheldrick G.M. Substructure solution with SHELXD. Acta Crystallogr. Sect. D 58 (2002) 1772-1779
31. Terwilliger T.C., and Berendzen J. Automated MAD and MIR structure solution. Acta Crystallogr. Sect. D 55 (1999) 849-861
32. Terwilliger T.C. Maximum likelihood density modification. Acta Crystallogr. Sect. D 56 (2000) 965-972
33. Cambillau C., and Roussel A. Turbo Frodo, Version OpenGL.1 (1997), University Aix-Marseille II, Marseille
34. Adams P.D., Pannu N.S., Read R.J., and Brunger A.T. Cross-validated maximum likelihood enhances crystallographic simulated annealing and refinement. Proc. Natl Acad. Sci. USA 94 (1997) 5018-5023
35. Vagin A.A., and Teplyakov A. An automated program for molecular replacement: MOLREP. J. Appl. Crystallogr. 30 (1997) 1022-1025
36. Murshudov G.N., Vagin A.A., and Dodson E. Refinement of macromolecular structures by maximum-likelihood method. Acta Crystallogr. Sect. D 53 (1997) 240-255
37. Collaborative Computational Project. The CCP4 suit: programs for protein crystallography. Acta Crystallogr. Sect. D 50 (1994) 760-763
38. Smart O.S., Neduvelil J.G., Wang X., Wallace B.A., and Sansom M.S. HOLE: a program for the analysis of the pore dimensions of ion channel structural models. J. Mol. Graphics 14 (1996) 354-360
39. Carson M. RIBBONS. Methods Enzymol. 277 (1996) 493-505
40. Nicholls A., Sharp K.A., and Honig B. Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins Struct. Funct. Genet. 11 (1991) 281-296
41. Rice P., Longden I., and Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends Genet. 16 (2000) 276-277
42. SA channel complexes include four subunits each of DPP6 and Kv4.2. J. Biol. Chem. 283 (2008) 15072-15077
43. Myszka D.G. Improving biosensor analysis. J. Mol. Recognit. 12 (1999) 279-284
44. + channel currents. Eur. Biophys. J. 29 (2000) 555-557