Exceptional LINE density at V1R loci: The lyon repeat hypothesis revisited on autosomes

Journal of Molecular Evolution

Volumn 68, Issue 2, 2009, Pages 145-159

  Kambere, Marijo B ^a   Lane, Robert P ^a  

^a WESLEYAN UNIVERSITY   (United States)

Author keywords

Allelic exclusion; Duplication; Long interspersed nuclear element; Olfactory recept; Vomeronasal type 1 receptor genes; Vomeronasal type 2 receptor genes; X inactivation

Indexed keywords

ALGORITHMS; ANIMALS; CATTLE; CHROMOSOMES, MAMMALIAN; CLUSTER ANALYSIS; DOGS; DOSAGE COMPENSATION, GENETIC; EVOLUTION, MOLECULAR; GENE DUPLICATION; LONG INTERSPERSED NUCLEOTIDE ELEMENTS; MAMMALS; MICE; MODELS, GENETIC; OPOSSUMS; RATS; RECEPTORS, ODORANT; RECEPTORS, PHEROMONE; STATISTICS, NONPARAMETRIC; X CHROMOSOME;

MAMMALIA;

EID: 61349095309     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-008-9195-0     Document Type: Article

References (42)

1. G Abrusan HJ Krambeck 2006 The distribution of L1 and Alu retroelements in relation to GC content on human sex chromosomes is consistent with the ectopic recombination model J Mol Evol 63 484 492
2. E Allen S Horvath F Tong P Kraft E Spiteri AD Riggs Y Marahrens 2003 High concentrations of long interspersed nuclear element sequence distinguish monoallelically expressed genes Proc Natl Acad Sci USA 100 9940 9945
3. M Babcock A Pavlicek E Spiteri CD Kashork I Ioshikhes LG Shaffer J Jurka BE Morrow 2003 Shuffling of genes within low-copy repeats on 22q11 (LCR22) by Alu-mediated recombination events during evolution Genome Res 13 2519 2532
4. JA Bailey L Carrel A Chakravarti EE Eichler 2000 Molecular evidence for a relationship between LINE-1 elements and X chromosome inactivation: the Lyon repeat hypothesis Proc Natl Acad Sci USA 97 6634 6639
5. S Boissinot P Chevret AV Furano 2000 L1 (LINE-1) Retrotransposon evolution and amplification in recent human history Mol Biol Evol 17 915 928
6. LB Buck 2004 Olfactory receptors and odor coding in mammals Nutr Rev 62 S184 S188 discussion S224-S241
7. L Buck R Axel 1991 A novel multigene family may encode odorant receptors: a molecular basis for odor recognition Cell 65 175 187
8. A Chess I Simon H Cedar R Axel 1994 Allelic inactivation regulates olfactory receptor gene expression Cell 78 823 834
9. C Dulac R Axel 1995 A novel family of genes encoding putative pheromone receptors in mammals Cell 83 195 206
10. AW Ensminger A Chess 2004 Coordinated replication timing of monoallelically expressed genes along human autosomes Hum Mol Genet 13 651 658
11. Q Feng JV Moran HH Kazazian Jr JD Boeke 1996 Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition Cell 87 905 916
12. SL Gasior TP Wakeman B Xu PL Deininger 2006 The human LINE-1 retrotransposon creates DNA double-strand breaks J Mol Biol 357 1383 1393
13. RA Gibbs GM Weinstock ML Metzker 2004 Genome sequence of the Brown Norway rat yields insights into mammalian evolution Nature 428 493 521
14. WE Grus P Shi YP Zhang J Zhang 2005 Dramatic variation of the vomeronasal pheromone receptor gene repertoire among five orders of placental and marsupial mammals Proc Natl Acad Sci USA 102 5767 5772
15. SC Hardies SL Martin CF Voliva CA Hutchison MH Edgell 1986 An analysis of replacement and synonymous changes in the rodent L1 repeat family Mol Biol Evol 3 109 125
16. G Herrada C Dulac 1997 A novel family of putative pheromone receptors in mammals with a topographically organized and sexually dimorphic distribution Cell 90 763 773
17. M Hurles 2004 Gene duplication: the genomic trade in spare parts PLoS Biol 2 E206
18. Jukes JA, Cantor CR (1969) Evolution of protein molecules. Academic Press, New York
19. MB Kambere RP Lane 2007 Co-regulation of a large and rapidly evolving repertoire of odorant receptor genes BMC Neurosci 8 Suppl 3 S2
20. EB Keverne 2002 Mammalian pheromones: from genes to behaviour Curr Biol 12 R807 R809
21. RP Lane T Cutforth R Axel L Hood BJ Trask 2002 Sequence analysis of mouse vomeronasal receptor gene clusters reveals common promoter motifs and a history of recent expansion Proc Natl Acad Sci USA 99 291 296
22. MF Lyon 2003 The Lyon and the LINE hypothesis Semin Cell Dev Biol 14 313 318
23. H Matsunami LB Buck 1997 A multigene family encoding a diverse array of putative pheromone receptors in mammals Cell 90 775 784
24. T Olender T Fuchs C Linhart R Shamir M Adams F Kalush M Khen D Lancet 2004 The canine olfactory subgenome Genomics 83 361 372
25. E Pascale C Liu E Valle K Usdin AV Furano 1993 The evolution of lone interspersed repeated DNA (L1, LINE 1) as revealed by the analysis of an ancient rodent L1 DNA family J Mol Evol 36 9 20
26. A Pastink JC Eeken PH Lohman 2001 Genomic integrity and the repair of double-strand DNA breaks Mutat Res 480-481 37 50
27. I Rodriguez P Feinstein P Mombaerts 1999 Variable patterns of axonal projections of sensory neurons in the mouse vomeronasal system Cell 97 199 208
28. I Rodriguez K Del Punta A Rothman T Ishii P Mombaerts 2002 Multiple new and isolated families within the mouse superfamily of V1r vomeronasal receptors Nat Neurosci 5 134 140
29. NJ Ryba R Tirindelli 1997 A new multigene family of putative pheromone receptors Neuron 19 371 379
30. S Serizawa T Ishii H Nakatani A Tsuboi F Nagawa M Asano K Sudo J Sakagami H Sakano T Ijiri Y Matsuda M Suzuki T Yamamori Y Iwakura H Sakano 2000 Mutually exclusive expression of odorant receptor transgenes Nat Neurosci 3 687 693
31. V Shoja L Zhang 2006 A roadmap of tandemly arrayed genes in the genomes of human, mouse, and rat Mol Biol Evol 23 2134 2141
32. N Singh FA Ebrahimi AA Gimelbrant AW Ensminger MR Tackett P Qi J Gribnau A Chess 2003 Coordination of the random asynchronous replication of autosomal loci Nat Genet 33 339 341
33. AF Smit G Toth AD Riggs J Jurka 1995 Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences J Mol Biol 246 401 417
34. SS Tan EA Williams PP Tam 1993 X-chromosome inactivation occurs at different times in different tissues of the post-implantation mouse embryo Nat Genet 3 170 174
35. AT Tharapel RC Michaelis GV Velagaleti CH Laundon PR Martens PD Buchanan KE Teague SA Tharapel RS Wilroy Jr 1999 Chromosome duplications and deletions and their mechanisms of origin Cytogenet Cell Genet 85 285 290
36. M van den Bosch PH Lohman A Pastink 2002 DNA double-strand break repair by homologous recombination Biol Chem 383 873 892
37. CF Voliva CL Jahn MB Comer CA Hutchison MH Edgell 1983 The L1Md long interspersed repeat family in the mouse: almost all examples are truncated at one end Nucleic Acids Res 11 8847 8859
38. RH Waterston K Lindblad-Toh E Birney 2002 Initial sequencing and comparative analysis of the mouse genome Nature 420 520 562
39. H Yang P Shi YP Zhang J Zhang 2005 Composition and evolution of the V2r vomeronasal receptor gene repertoire in mice and rats Genomics 86 306 315
40. JM Young C Friedman EM Williams JA Ross L Tonnes-Priddy BJ Trask 2002 Different evolutionary processes shaped the mouse and human olfactory receptor gene families Hum Mol Genet 11 535 546
41. JM Young M Kambere BJ Trask RP Lane 2005 Divergent V1R repertoires in five species: Amplification in rodents, decimation in primates, and a surprisingly small repertoire in dogs Genome Res 15 231 240
42. X Zhang S Firestein 2002 The olfactory receptor gene superfamily of the mouse Nat Neurosci 5 124 133