-
1
-
-
33746867136
-
Is there biological research beyond Systems Biology? A comparative analysis of terms
-
Art. No. 2005.0012. 1681443 16729047
-
Bork P: Is there biological research beyond Systems Biology? A comparative analysis of terms. Mol Syst Biol 2005 1. Art. No. 2005.0012. 1681443 16729047
-
(2005)
Mol Syst Biol
, vol.1
-
-
Bork, P.1
-
2
-
-
0037385718
-
Genome-scale microbial in silico models: The constraints-based approach
-
10.1016/S0167-7799(03)00030-1 12679064
-
Price ND Papin JA Schilling CH Palsson BO: Genome-scale microbial in silico models: The constraints-based approach. Trends Biotechnol 2003, 21:162-169. 10.1016/S0167-7799(03)00030-1 12679064
-
(2003)
Trends Biotechnol
, vol.21
, pp. 162-169
-
-
Price, N.D.1
Papin, J.A.2
Schilling, C.H.3
Palsson, B.O.4
-
3
-
-
9544253891
-
Genome-scale models of microbial cells: Evaluating the consequences of constraints
-
10.1038/nrmicro1023 15494745
-
Price ND Reed JL Palsson BO: Genome-scale models of microbial cells: evaluating the consequences of constraints. Nature Reviews Microbiology 2004, 2:886-897. 10.1038/nrmicro1023 15494745
-
(2004)
Nature Reviews Microbiology
, vol.2
, pp. 886-897
-
-
Price, N.D.1
Reed, J.L.2
Palsson, B.O.3
-
4
-
-
0344328817
-
An expanded genomescale model of Escherichia coli K-12 (iJR904GSM/GPR)
-
193654 12952533 10.1186/gb-2003-4-9-r54
-
Reed JL Vo TD Schilling CH Palsson BO: An expanded genomescale model of Escherichia coli K-12 (iJR904GSM/GPR). Genome Biology 2003, 4:R54. 193654 12952533 10.1186/gb-2003-4-9-r54
-
(2003)
Genome Biology
, vol.4
-
-
Reed, J.L.1
Vo, T.D.2
Schilling, C.H.3
Palsson, B.O.4
-
5
-
-
34347332311
-
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
-
Art. No. 121. 1911197 17593909
-
Feist AM Henry CS Reed JL Krummenacker M Joyce AR Karp PD Broadbelt LJ Hatzimanikatis V Palsson BØ: A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. Molecular Systems Biology 2007 3. Art. No. 121. 1911197 17593909
-
(2007)
Molecular Systems Biology
, vol.3
-
-
Feist, A.M.1
Henry, C.S.2
Reed, J.L.3
Krummenacker, M.4
Joyce, A.R.5
Karp, P.D.6
Broadbelt, L.J.7
Hatzimanikatis, V.8
Palsson, BØ.9
-
6
-
-
17844405878
-
Genome-scale reconstruction of the metabolic network in Staphylococcus aureus N315: An initial draft to the two-dimensional annotation
-
Art. No. 8. 1079855 15752426
-
Becker A Scott Palsson Ø Bernhard: Genome-scale reconstruction of the metabolic network in Staphylococcus aureus N315: An initial draft to the two-dimensional annotation. BMC Microbiol 2005 5. Art. No. 8. 1079855 15752426
-
(2005)
BMC Microbiol
, vol.5
-
-
Becker, S.1
Palsson, B.2
-
7
-
-
23644452487
-
Expanded metabolic reconstruction of Helicobacter pylori (iIT341 GSM/ GPR): An in silico genome-scale characterization of single- and double-deletion mutants
-
1196094 16077130 10.1128/JB.187.16.5818-5830.2005
-
Ines Thiele Vo D Thuy Price D Nathan Palsson Ø Bernhard: Expanded metabolic reconstruction of Helicobacter pylori (iIT341 GSM/GPR): An in silico genome-scale characterization of single- and double-deletion mutants. Journal of Bacteriology 2005, 187:5818-5830. 1196094 16077130 10.1128/JB.187.16.5818-5830.2005
-
(2005)
Journal of Bacteriology
, vol.187
, pp. 5818-5830
-
-
Ines, T.1
Vo, T.2
Price, N.3
Palsson, B.4
-
8
-
-
33645462347
-
Modeling methanogenesis with a genome-scale metabolic reconstruction of Methanosarcina barkeri
-
Art. No. 2006.0004. 1681478 16738551
-
Feist M Adam Scholten CM Johannes Palsson Ø Bernhard Brockman J Fred Ideker: Trey Modeling methanogenesis with a genome-scale metabolic reconstruction of Methanosarcina barkeri. Molecular Systems Biology 2006 2. Art. No. 2006.0004. 1681478 16738551
-
(2006)
Molecular Systems Biology
, vol.2
-
-
Feist, A.1
Scholten, J.2
Palsson, B.3
Brockman, F.4
Ideker, T.5
-
9
-
-
3843128481
-
Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model
-
442145 15197165 10.1101/gr.2250904
-
Duarte C Natalie Herrgard J Markus Palsson Ø Bernhard: Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model. Genome Res 2004, 14:1298-1309. 442145 15197165 10.1101/gr.2250904
-
(2004)
Genome Res
, vol.14
, pp. 1298-1309
-
-
Duarte, N.1
Herrgard, M.2
Palsson, B.3
-
10
-
-
35348934254
-
Genome-scale reconstruction of metabolic network in Bacillus subtilis based on high-throughput phenotyping and gene essentiality data
-
10.1074/jbc.M703759200 17573341
-
Oh YK Palsson BO Park SM Schilling CH Mahadevan R: Genome-scale reconstruction of metabolic network in Bacillus subtilis based on high-throughput phenotyping and gene essentiality data. J Biol Chem 2007, 282:28791-28799. 10.1074/jbc.M703759200 17573341
-
(2007)
J Biol Chem
, vol.282
, pp. 28791-28799
-
-
Oh, Y.K.1
Palsson, B.O.2
Park, S.M.3
Schilling, C.H.4
Mahadevan, R.5
-
11
-
-
34347258175
-
Quantitative prediction of cellular metabolism with constraint-based models: The COBRA Toolbox
-
10.1038/nprot.2007.99 17406635
-
Becker SA Feist AM Mo ML Hannum G Palsson BO Herrgard MJ: Quantitative prediction of cellular metabolism with constraint-based models: The COBRA Toolbox. Nat Protoc 2007, 2:727-738. 10.1038/nprot.2007.99 17406635
-
(2007)
Nat Protoc
, vol.2
, pp. 727-738
-
-
Becker, S.A.1
Feist, A.M.2
Mo, M.L.3
Hannum, G.4
Palsson, B.O.5
Herrgard, M.J.6
-
12
-
-
45149111660
-
The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli
-
10.1038/nbt1401 18536691
-
Feist M Adam Palsson Ø Bernhard: The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli. Nature Biotechnology 2008, 26:659-667. 10.1038/nbt1401 18536691
-
(2008)
Nature Biotechnology
, vol.26
, pp. 659-667
-
-
Feist, A.1
Palsson, B.2
-
13
-
-
33749506763
-
From in vivo to in silico biology and back
-
10.1038/nature05127 17024084
-
Di Ventura B Lemerle C Michalodimitrakis K Serrano L: From in vivo to in silico biology and back. Nature 2006, 443:527-533. 10.1038/nature05127 17024084
-
(2006)
Nature
, vol.443
, pp. 527-533
-
-
Di Ventura, B.1
Lemerle, C.2
Michalodimitrakis, K.3
Serrano, L.4
-
15
-
-
36749009250
-
In silico network topology-based prediction of gene essentiality
-
10.1016/j.physa.2007.10.044
-
da Silva JPM Acencio ML Mornbach JCM Vieira R da Silva JC Lemke N Sinigagliac M: In silico network topology-based prediction of gene essentiality. Physica A-Statistical Mechanics and Its Applications 2008, 387:1049-1055. 10.1016/j.physa.2007.10.044
-
(2008)
Physica A-Statistical Mechanics and Its Applications
, vol.387
, pp. 1049-1055
-
-
da Silva, J.P.M.1
Acencio, M.L.2
Mornbach, J.C.M.3
Vieira, R.4
da Silva, J.C.5
Lemke, N.6
Sinigagliac, M.7
-
16
-
-
27744585668
-
Lethality and synthetic lethality in the genome-wide metabolic network of Escherichia coli
-
10.1016/j.jtbi.2005.04.025 15975601
-
Ghim Cheol-Min Goh Kwang-Il Kahng Byungnam: Lethality and synthetic lethality in the genome-wide metabolic network of Escherichia coli. Journal of Theoretical Biology 2005, 237:401-411. 10.1016/ j.jtbi.2005.04.025 15975601
-
(2005)
Journal of Theoretical Biology
, vol.237
, pp. 401-411
-
-
Ghim, C.-M.1
Goh, K.-Il.2
Kahng, B.3
-
17
-
-
2942624207
-
Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast
-
10.1038/nature02636 15190353
-
Papp Bala'zs Pa'l Csaba Hurst D Laurence: Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast. Nature 2004, 429:661-664. 10.1038/nature02636 15190353
-
(2004)
Nature
, vol.429
, pp. 661-664
-
-
Papp, B.1
Pa'l, C.2
Hurst, L.3
-
18
-
-
11244333081
-
Properties of Metabolic Networks: Structure versus Function
-
1305059 15574705 10.1529/biophysj.104.055723
-
Mahadevan R Palsson BO: Properties of Metabolic Networks: Structure versus Function. Biophysical Journal 2005, 88:L07-L09. 1305059 15574705 10.1529/biophysj.104.055723
-
(2005)
Biophysical Journal
, vol.88
-
-
Mahadevan, R.1
Palsson, B.O.2
-
19
-
-
0034625143
-
The Escherichia coli MG1655 in silico metabolic genotype: Its definition, characteristics, and capabilities
-
25862 10805808 10.1073/pnas.97.10.5528
-
Edwards JS Palsson BO: The Escherichia coli MG1655 in silico metabolic genotype: Its definition, characteristics, and capabilities. Proceedings of the National Academy of Sciences of the United States of America 2000, 97:5528-5533. 25862 10805808 10.1073/pnas.97.10.5528
-
(2000)
Proceedings of the National Academy of Sciences of the United States of America
, vol.97
, pp. 5528-5533
-
-
Edwards, J.S.1
Palsson, B.O.2
-
20
-
-
39749124901
-
Three factors underlying incorrect in silico predictions of essential metabolic genes
-
Art. No. 14. 2248557 18248675 10.1186/1752-0509-2-14
-
Becker SA Palsson BO: Three factors underlying incorrect in silico predictions of essential metabolic genes. BMC Syst Biol 2008, 2:14. Art. No. 14. 2248557 18248675 10.1186/1752-0509-2-14
-
(2008)
BMC Syst Biol
, vol.2
, pp. 14
-
-
Becker, S.A.1
Palsson, B.O.2
-
21
-
-
0344824417
-
Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network
-
263729 14578455 10.1073/pnas.2235812100
-
Iman Famili Jochen Förster Jens Nielsen Palsson O Bernhard: Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network. Proceedings of the National Academy of Sciences of the United States of America 2003, 100:13134-13139. 263729 14578455 10.1073/ pnas.2235812100
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, pp. 13134-13139
-
-
Iman, F.1
Jochen, F.2
Nielsen, J.3
Palsson, B.4
-
22
-
-
33751567092
-
Experimental and Computational Assessment of Conditionally Essential Genes in Escherichia coli
-
10.1128/JB.00740-06
-
Joyce R Andrew Reed L Jennifer Aprilfawn White Robert Edwards Andrei Osterman Tomoya Baba Hirotada Mori Lesely A Scott Palsson Ø Bernhard Sanjay Agarwalla: Experimental and Computational Assessment of Conditionally Essential Genes in Escherichia coli. J Bacteriol 2006, 118:8259-8271. 10.1128/JB.00740-06
-
(2006)
J Bacteriol
, vol.118
, pp. 8259-8271
-
-
Joyce, A.1
Reed, J.2
Aprilfawn, W.3
Robert, E.4
Osterman, A.5
Tomoya, B.6
Hirotada, M.7
Lesely, S.8
Palsson, B.9
Sanjay, A.10
-
23
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: The Keio collection
-
1681482 16738554 10.1038/msb4100050
-
Baba T Ara T Hasegawa M Takai Y Okumura Y Baba M Datsenko KA Tomita M Wanner BL Mori H: Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: The Keio collection. Mol Syst Biol 2006, 2:2006.0008. 1681482 16738554 10.1038/msb4100050
-
(2006)
Mol Syst Biol
, vol.2
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
Datsenko, K.A.7
Tomita, M.8
Wanner, B.L.9
Mori, H.10
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