Genetic characterisation of farmed rainbow trout in Norway: Intra- and inter-strain variation reveals potential for identification of escapees

BMC Genetics

Volumn 9, Issue , 2008, Pages 87-

  Glover, Kevin A ^a  

^a INSTITUTE OF MARINE RESEARCH   (Norway)

Author keywords

[No Author keywords available]

Indexed keywords

ALLELE; AQUACULTURE; ARTICLE; CONTROLLED STUDY; FISH GENETICS; GENE LOCUS; GENETIC IDENTIFICATION; GENETIC VARIABILITY; GENOTYPE; MICROSATELLITE MARKER; NONHUMAN; NORWAY; PISCICULTURE; RAINBOW TROUT; SPECIES DIFFERENCE; STRAIN DIFFERENCE;

ONCORHYNCHUS MYKISS;

EID: 60849122231     PISSN: None     EISSN: 14712156     Source Type: Journal    
DOI: 10.1186/1471-2156-9-87     Document Type: Article

References (40)

1. FAO Cultured Aquatic Species Information Programme × Oncorhynchus mykiss. In FAO Fisheries and Aquaculture Department [online]. Rome. Updated 15 Jun 2005. [Cited 11 Jul 2008] http://www.fao.org/fishery/ culturedspecies/Oncorhynchus_mykiss
2. Anon The ministry of Fisheries and Coastal Affairs. Facts about Fisheries and Aquaculture http://www.fisheries.no
3. Gjedrem T Flesh quality improvement in fish through breeding Aquaculture International 1997, 5(3):197-206. 10.1023/A:1014546816984
4. Gjedrem T Genetic improvement of cold-water fish species Aquaculture Research 2000, 31(1):25-33. 10.1046/j.1365-2109.2000.00389.x
5. Garber AF Sullivan CV Selective breeding for the hybrid striped bass (Morone chrysops, Rafinesque x M-saxatilis, Walbaum) industry: Status and perspectives Aquaculture Research 2006, 37(4):319-338. 10.1111/ j.1365-2109.2005.01439.x
6. Kettunen A Fjalestad KT Genetic parameters for important traits in the breeding program for Atlantic cod (Gadus morhua L.) Aquaculture 2007, 272-276.
7. de Leon FJG Canonne M Quillet E Bonhomme F Chatain B The application of microsatellite markers to breeding programmes in the sea bass, Dicentrarchus labrax Aquaculture 1998, 159(3-4):303-316. 10.1016/ S0044-8486(97)00188-9
8. Nielsen JL Fountain MC Microsatellite diversity in sympatric reproductive ecotypes of Pacific steelhead (Oncorhynchus mykiss) from the Middle Fork Eel River, California Ecology of Freshwater Fish 1999, 8(3):159-168. 10.1111/j.1600-0633.1999.tb00067.x
9. Gregg RE Rhodes OE Armstrong G A genetic analysis of the London strain of rainbow trout Animal Genetics 2001, 32(4):210-214. 10.1046/ j.1365-2052.2001.00766.x 11531700
10. Narum SR Contor C Talbot A Powell MS Genetic divergence of sympatric resident and anadromous forms of Oncorhynchus mykiss in the Walla Walla River, USA Journal of Fish Biology 2004, 65(2):471-488. 10.1111/ j.0022-1112.2004.00461.x
11. Aguilar A Garza JC A comparison of variability and population structure for major histocompatibility complex and microsatellite loci in California coastal steelhead (Oncorhynchus mykiss Walbaum) Molecular Ecology 2006, 15(4):923-937. 10.1111/j.1365-294X.2006.02843.x 16599957
12. Johnson NA Rexroad CE Hallerman EM Vallejo RL Palti Y Development and evaluation of a new microsatellite multiplex system for parental allocation and management of rainbow trout (Oncorhynchus mykiss) broodstocks Aquaculture 2007, 266(1-4):53-62. 10.1016/ j.aquaculture.2007.02.054
13. Hauser L Seamons TR Dauer M Naish KA Quinn TP An empirical verification of population assignment methods by marking and parentage data: Hatchery and wild steelhead (Oncorhynchus mykiss) in Forks Creek, Washington, USA Molecular Ecology 2006, 15(11):3157-3173. 10.1111/ j.1365-294X.2006.03017.x 16968262
14. Silverstein JT Rexroad CE King TL Genetic variation measured by microsatellites among three strains of domesticated rainbow trout (Oncorhynchus mykiss, Walbaum) Aquaculture Research 2004, 35(1):40-48. 10.1111/j.1365-2109.2004.00979.x
15. Gross R Lulla P Naver T Genetic variability and differentiation of rainbow trout (Oncorhynchus mykiss) strains in northern and Eastern Europe Aquaculture 2007, 272:139-146. 10.1016/j.aquaculture.2007.08.004
16. Baarøy V Gjerde B Heggberget TG Jensen PE Maroni K Sandvik S Skaala Ø Identifisering av rømt oppdrettlaks. Utredning av utvalg nedsatt av Fiskeridirektøren (Identification of escaped farmed salmon. Report from the committee to the Directer of Fisheries). In Norwegian 2004
17. Coughlan J McGinnity P O'Farrell B Dillane E Diserud O de Eyto E Farrell K Whelan K Stet RJM Cross TF Temporal variation in an immune response gene (MHC I) in anadromous Salmo trutta in an Irish river before and during aquaculture activities ICES Journal of Marine Science 2006, 63(7):1248-1255. 10.1016/j.icesjms.2006.03.025
18. Glover KA Skilbrei OT Skaala Ø Genetic assignment identifies farm of origin for Atlantic salmon (Salmo salar L.) escapees in a Norwegian fjord ICES Journal of Marine Science 2008, 65:1-9. advanced access 10.1093/icesjms/fsn056
19. Skaala O Hoyheim B Glover K Dahle G Microsatellite analysis in domesticated and wild Atlantic salmon (Salmo salar L.): Allelic diversity and identification of individuals Aquaculture 2004, 240(1-4):131-143. 10.1016/j.aquaculture.2004.07.009
20. Skilbrei OT Wennevik V The use of catch statistics to monitor the abundance of escaped farmed Atlantic salmon and rainbow trout in the sea ICES Journal of Marine Science 2006, 63(7):1190-1200. 10.1016/ j.icesjms.2006.05.005
21. Pierce LR Palti Y Silverstein JT Barrows FT Hallerman EM Parsons JE Family growth response to fishmeal and plant-based diets shows genotype x diet interaction in rainbow trout (Oncorhynchus mykiss) Aquaculture 2008, 278(1-4):37-42. 10.1016/j.aquaculture.2008.03.017
22. Hoffman JI Amos W Microsatellite genotyping errors: Detection approaches, common sources and consequences for paternal exclusion Molecular Ecology 2005, 14(2):599-612. 10.1111/j.1365-294X.2004.02419.x 15660949
23. Pompanon F Bonin A Bellemain E Taberlet P Genotyping errors: Causes, consequences and solutions Nature Reviews Genetics 2005, 6(11):847-859. 10.1038/nrg1707 16304600
24. Raymond M Rousset F Genepop (Version-1.2) × Population-Genetics Software for Exact Tests and Ecumenicism Journal of Heredity 1995, 86(3):248-249.
25. Goudet J FSTAT (Version 1.2): A computer program to calculate F-statistics Journal of Heredity 1995, 86(6):485-486.
26. Miller MP Tools for population genetic analysis v1.3 1999 http://www.marksgeneticsoftware.net/tfpga.htm
27. Nei M Estimation of Average Heterozygosity and Genetic Distance from a Small Number of Individuals Genetics 1978, 89(3):583-590. 1213855 17248844
28. Cornuet JM Piry S Luikart G Estoup A Solignac M New methods employing multilocus genotypes to select or exclude populations as origins of individuals Genetics 1999, 153(4):1989-2000. 1460843 10581301
29. Mank JE Avise JC Individual organisms as units of analysis: Bayesian-clustering alternatives in population genetics Genetical Research 2004, 84(3):135-143. 10.1017/S0016672304007190 15822602
30. Paetkau D The optimal number of markers in genetic capture-mark-recapture studies Journal of Wildlife Management 2004, 68(3):449-452. 10.2193/0022-541X(2004)068[0449:TONOMI]2.0.CO;2
31. MacCrimmon HR World Distribution of Rainbow Trout (Salmo-Gairdneri) Journal of the Fisheries Research Board of Canada 1971, 28(5):663-704.
32. Deiner K Garza JC Coey R Girman DJ Population structure and genetic diversity of trout (Oncorhynchus mykiss) above and below natural and man-made barriers in the Russian River, California Conservation Genetics 2007, 8(2):437-454. 10.1007/s10592-006-9183-0
33. Sjogren P Wyoni PI Conservation Genetics and Detection of Rare Alleles in Finite Populations Conservation Biology 1994, 8(1):267-270. 10.1046/ j.1523-1739.1994.08010267.x
34. Leberg PL Estimating allelic richness: Effects of sample size and bottlenecks Molecular Ecology 2002, 11(11):2445-2449. 10.1046/ j.1365-294X.2002.01612.x 12406254
35. Gall GAE Crandell PA The Rainbow-Trout Aquaculture 1992, 100(1-3):1-10. 10.1016/0044-8486(92)90333-G
36. Coulibaly I Gharbi K Danzmann RG Yao J Rexroad CE Characterization and comparison of microsatellites derived from repeat-enriched libraries and expressed sequence tags Animal Genetics 2005, 36(4):309-315. 10.1111/ j.1365-2052.2005.01305.x 16026341
37. Rexroad CE Rodriguez MF Coulibaly I Gharbi K Danzmann RG DeKoning J Phillips R Palti Y Comparative mapping of expressed sequence tags containing microsatellites in rainbow trout (Oncorhynchus mykiss) BMC Genomics 2005, 6(1):54. 1090573 15836796 10.1186/1471-2164-6-54
38. Palti Y Fincham MR Rexroad CE Characterization of 38 polymorphic microsatellite markers for rainbow trout (Oncorhynchus mykiss) Molecular Ecology Notes 2002, 2(4):449-452. 10.1046/j.1471-8286.2002.00274.x
39. Rexroad CE Coleman RL Gustafson AL Hershberger WK Killefer J Development of rainbow trout microsatellite markers from repeat enriched libraries Marine Biotechnology 2002, 4(1):12-16. 10.1007/s10126-001-0058-6 14961284
40. Rexroad CE Coleman RL Hershberger WK Killefer J Rapid communication: Thirty-eight polymorphic microsatellite markers for mapping in rainbow trout Journal of Animal Science 2002, 80(2):541-542. 11881939