Phylogeny of the families Pyuridae and Styelidae (Stolidobranchiata, Ascidiacea) inferred from mitochondrial and nuclear DNA sequences

Molecular Phylogenetics and Evolution

Volumn 50, Issue 3, 2009, Pages 560-570

  Perez Portela R ^a,b   Bishop, J D D ^b,c   Davis, A R ^d   Turon, X ^e  

^a INSTITUTO SUPERIOR DE PSICOLOGIA APLICADA   (Portugal)

^b THE LABORATORY   (United Kingdom)

^c UNIVERSITY OF PLYMOUTH   (United Kingdom)

^d UNIVERSITY OF WOLLONGONG   (Australia)

^e CENTRE D ESTUDIS AVANÇATS DE BLANES CEAB CSIC   (Spain)

Author keywords

18S rDNA; COI; Coloniality; Molecular phylogeny; Pyuridae; Stolidobranchiata; Styelidae

Indexed keywords

MITOCHONDRIAL DNA; RIBOSOME DNA;

ANIMAL; ARTICLE; BAYES THEOREM; CELL NUCLEUS; CLASSIFICATION; DNA SEQUENCE; GENETICS; MITOCHONDRION; MOLECULAR EVOLUTION; PHYLOGENY; SEQUENCE ALIGNMENT; SPECIES DIFFERENTIATION; STATISTICAL MODEL; UROCHORDATA;

ANIMALS; BAYES THEOREM; CELL NUCLEUS; DNA, MITOCHONDRIAL; DNA, RIBOSOMAL; EVOLUTION, MOLECULAR; GENETIC SPECIATION; LIKELIHOOD FUNCTIONS; MITOCHONDRIA; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; UROCHORDATA;

ASCIDIACEA; BOTRYLLOIDES; BOTRYLLUS; MOLGULIDAE; POLYCARPA; PYURA; PYURIDAE; STYELA PLICATA; STYELIDAE; SYMPLEGMA;

EID: 60649108394     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2008.11.014     Document Type: Article

References (64)

1. Abbot D.P. Asexual reproduction in the colonial ascidian Metandrocarpa taylori Huntsman. Univ. Cal. Pub. Zool. 61 (1953) 1-78
2. Berrill N.J. The gonads, larvae, and budding of the Polystyelid ascidians Stolonica and Distomus. J. Mar. Biol. Ass. U.K. 27 (1949) 633-650
3. Berrill N.J. Regeneration and budding in Tunicates. Biol. Rev. 26 (1951) 456-475
4. Berrill N.J. The Tunicata (1950), Ray Society, London
5. Berrill N.J. The Origin of Vertebrates (1955), Oxford University Press, London
6. Bishop J.D.D., and Sommerfeldt A.D. Not like Botryllus: indiscriminate post-metamorphic fusion in a compound ascidian. Proc. R. Soc. Lond. 266 (1999) 241-248
7. Blair J.E., and Hedges S.B. Molecular clocks do not support the Cambrian explosion. Mol. Biol. Evol. 22 (2005) 387-390
8. Bourlat S.J., Nielsen C., Lockyer A.E., Littlewood D.T., and Telford M.J. Xenoturbella is a deuterostome that eats molluscs. Nature (Lond.) 424 (2003) 925-928
9. Bourlat S.J., Juliusdottir T., Lowe C.J., Freeman R., Aronowicz J., Kirschner M., Lander E.S., Thorndyke M., Nakano H., Kohn A.B., Heyland A., Moroz L.L., Copley R.R., and Telford M.J. Deuterostome phylogeny reveals monophyletic chordates and the new phylum Xenoturbellida. Nature 444 (2006) 85-88
10. Brien P. Embranchement des Tuniciers. Morphologie et Reproduction. In: Grassé P.P. (Ed). Traité de Zoologie, Anatomie, Systématique, Biologie Tome XI. Échinodermes, Stomocordés, Procordés (1948), Masson, Paris 554-930
11. Cameron C.B., Garey J.R., and Swalla B.J. Evolution of the chordate body plan: new insights from phylogenetic analyses of deuterostome phyla. Proc. Natl. Acad. Sci. 87 (2000) 4469-4474
12. Carreras-Carbonell J., Macpherson E., and Pascual M. Rapid radiation and cryptic speciation in mediterranean triplefin blennies (Pisces: Tripterygiidae) combining multiple genes. Mol. Phylogenet. Evol. 37 (2005) 751-761
13. Delsuc F., Brinkmann H., Chourrout D., and Philippe H. Tunicates and not cephalochordates are the closest living relatives of vertebrates. Nature 439 (2006) 965-968
14. Doyle J.J., and Doyle J.L. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19 (1987) 11-15
15. Dunn C.W., Hejnol A., Matus D.Q., Pang K., Browne W.E., Smith S.A., Seaver E., Rouse G.W., Obst M., Edgecombe G., Sorensen M.V., Haddock S.H.D., Schmidt-Raesa A., Okusu A., Kristensen R.M., Wheeler W.C., Martindale M.Q., and Giribet G. Broad phylogenomic sampling improves resolution of the animal tree of life. Nature 452 (2008) 745-750
16. Farris J.S., Kallersjo M., Kluge A.G., and Bult C. Testing significance of incongruence. Cladistics 10 (1994) 315-319
17. Folmer O., Black M., Hoeh W., Lutz R., and Vrijenhoek R. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol. Mar. Biol. Biotechnol. 3 (1994) 294-299
18. Garstang W. The morphology of the Tunicata, and its bearings on the phylogeny of the Chordata. Quart. J. Micr. Sci. 72 (1928) 51-187
19. Grave C., and Riley G. Development of the sense organs of the larva of Botryllus schlosseri. J. Morphol. 57 (1935) 185-211
20. Hadfield K.A., Swalla B.J., and Jeffery W.R. Multiple origins of anural development in ascidians inferred from rDNA sequences. J. Mol. Evol. 40 (1995) 413-427
21. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. Ser. 41 (1999) 95-98
22. Huelsenbeck J.P., and Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17 (2001) 754-755
23. Huber J.L., Burke da Silva K., Bates W.R., and Swalla B.J. The evolution of anural larvae in molgulid ascidians. Cell Dev. Biol. 11 (2000) 419-426
24. Jobb G., Von Haeseler A., and Strimmer K. TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evol. Biol. 28 (2004) 4-18
25. Kott P. The Australian Ascidiacea Part I, Phlebobranchia and Stolidobranchia. Mem. Qld. Mus. 23 (1985) 1-440
26. Kott P. Form and function in the Ascidiacea. Bull. Mar. Sci. 45 (1989) 253-276
27. Kott P. A new colonial Styela (Ascidiacea: Styelidae) from an isolated marine habitat, Kakaban Island, East Kalimantan, Indonesia. Raffles Bull. Zool. 43 (1995) 469-474
28. Kott P. Novel Australian Polyzoinae (Styelidae, Tunicata). J. Nat. Hist. 39 (2005) 2997-3011
29. Koyama H., and Watanabe H. Studies of the fusion reaction in two species of Perophora (Ascidiacea). Mar. Biol. 92 (1986) 267-275
30. Kubatko L.S., and Degnan J.H. Inconsistency of phylogenetic estimates from concatenated data under coalescence. Syst. Biol. 56 (2007) 17-24
31. Kumar S., Tamura K., and Nei M. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform. 5 (2004) 150-163
32. Lambert C.C., Lambert I.M., and Lambert G. Brooding strategies in solitary ascidians-Corella species from north and south temperate waters. Can. J. Zool. 73 (1995) 1666-1671
33. Maddison W.P., and Knowles L.L. Inferring phylogeny despite incomplete lineage sorting. Syst. Biol. 55 (2006) 21-30
34. Milne Edwards M. Observations sur les ascidies composées des côtes de la Manche. Mem. Acad. Sci. Paris 18 (1841) 217-326
35. Monniot C. Ascidies de Nouvelle-Calédonie II. Les genres Polycarpa et Polyandrocarpa. Bul. Mus. Natn. Hist. Nat., Paris, 4e sér. 9 (1987) 275-310
36. Monniot C., Monniot F., and Laboute P. Coral Reef Ascidians of New Caledonia (1991), ORSTOM, Paris p. 247
37. Mukai H., Sugimoto K., and Taneda Y. Comparative studies on the circulatory system of the compound ascidians, Botryllus, Botrylloides and Symplegma. J. Morphol. 157 (1978) 49-78
38. Nakauchi M. Asexual development of ascidians: its biological significance, diversity, and morphogenesis. Am. Zool. 22 (1982) 753-763
39. Nishikawa T. The ascidians of the Japan Sea II. Publ. Seto Mar. Biol. Lab. 35 (1991) 25-170
40. Ogden H.T., and Rosenberg M.S. How should gaps be treated in parsimony? A comparison of approaches using simulation. Mol. Phylogenet. Evol. 42 (2007) 817-826
41. Pérez-Portela R., and Turon X. Phylogeny of the Clavelinidae, Ascidiacea, inferred from mtDNA data. Invert. Biol. 127 (2008) 108-120
42. Pérez-Portela R., Duran S., Palacín C., and Turon X. The genus Pycnoclavella (Ascidiacea) in the Atlanto-Mediterranean region: a combined molecular and morphological approach. Invert. Syst. 21 (2007) 187-205
43. Philippe H., Lartillot N., and Brinkmann H. Multigene analyses of Bilateria corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia. Mol. Biol. Evol. 22 (2005) 1246-1253
44. Posada D., and Crandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
45. Rinkevich B. Natural chimerism in colonial urochordates. J. Exp. Mar. Biol. Ecol. 322 (2005) 93-109
46. Satoh N. Developmental Biology of Ascidians (1994), Cambridge University Press, Cambridge
47. Stach T., and Turbeville J.M. Phylogeny of Tunicata inferred from molecular and morphological characters. Mol. Phylogenet. Evol. 25 (2002) 408-428
48. Svane I., and Young C.M. The ecology and behaviour of ascidian larvae. Oceanogr. Mar. Biol. Annu. Rev. 27 (1989) 45-90
49. Swalla B.J., Cameron C.B., Corley L.S., and Garey J.R. Urochordates are monophyletic within the deuterostomes. Syst. Biol. 49 (2000) 52-64
50. Swofford, D.L., 2002. 'PAUP*, Phylogenetic Analysis Using Parsimony (*and Other Methods).' Version 4, Sinauer Associates: Sunderland, MA, USA.
51. Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
52. Turbeville J.M., Schulz J.R., and Raff R.A. Deuterostome phylogeny and the sister group of the chordates: evidence from molecules and morphology. Mol. Biol. Evol. 11 (1994) 648-655
53. Turon X., and López-Legentil S. Ascidian molecular phylogeny inferred from mtDNA data with emphasis on the Aplousobranchiata. Mol. Phylogenet. Evol. 33 (2004) 309-320
54. Van Name W.G. Budding in compound ascidians and other invertebrates, and its bearing on the question of the early ancestry of the vertebrates. Bull. Am. Mus. Nat. Hist. 44 (1921) 275-282
55. Vorontsova M.N., and Malakhov V.V. Anatomy and fine structure of larvae in Cnemidocarpa finmarkiensis (Ascidia). 2. Sense organs. Zoologicheskyi Zur. 68 (1984) 1036-1045
56. Wada H. Evolutionary history of free-swimming and sessile lifestyles in Urochordates as deduced from 18SrDNA molecular phylogeny. Mol. Biol. Evol. 15 (1998) 1189-1194
57. Wada H., Makabe K.W., Nakauchi M., and Satoh N. Phylogenetic relationships between solitary and colonial ascidians, as inferred from the sequences of the central region of their respective 18S rDNAs. Biol. Bull. 183 (1992) 448-455
58. Watanabe H., and Newberry A.T. Budding by oozooids in the Polystyelid ascidian Metandrocarpa taylori Hunstman. J. Morphol. 148 (1976) 161-176
59. Watanabe H., and Taneda Y. Self or non-self recognition in compound ascidians. Am. Zool. 22 (1982) 775-782
60. Winchell C.J., Sullivan J., Cameron C.B., Swalla B.J., and Mallatt J. Evaluating hypotheses of deuterostome phylogeny and chordate evolution with new LSU and SSU ribosomal DNA data. Mol. Biol. Evol. 19 (2002) 762-776
61. Young C.M., and Braithwaite L.F. Orientation and current-induced flow in the stalked ascidian Styela montereyensis. Biol. Bull. 159 (1980) 428-440
62. Young N.D., and Healy J. GapCoder automates the use of indel characters in phylogenetic analysis. BMC Bioinformatics 4 (2003) 6
63. Zeng L., and Swalla B.J. Molecular phylogeny of the protochordates: chordate evolution. Can. J. Zool. 83 (2005) 24-33
64. Zeng L., Jacobs M.W., and Swalla B.J. Coloniality has evolved once in Stolidobranch Ascidians. Integr. Comp. Biol. 46 (2006) 255-268