Deinococcus aquiradiocola sp. nov., isolated from a radioactive site in Japan

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 1, 2009, Pages 144-149

  Asker, Dalal ^a,b   Awad, Tarek S ^b   Beppu, Teruhiko ^a   Ueda, Kenji ^a  

^a NIHON UNIVERSITY   (Japan)

^b UNIVERSITY OF MASSACHUSETTS   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; RNA 16S; BACTERIAL DNA; FATTY ACID; FRESH WATER; RIBOSOME DNA;

ARTICLE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CONTROLLED STUDY; DEINOCOCCUS; DEINOCOCCUS ALTITUDINIS; DEINOCOCCUS AQUIRADIOCOLA; DEINOCOCCUS CLAUDIONIS; DEINOCOCCUS DESERTI; DEINOCOCCUS HOPIENSIS; DEINOCOCCUS RADIOMOLLIS; DEINOCOCCUS SONORENSIS; DNA BASE COMPOSITION; FATTY ACID ANALYSIS; FRESHWATER ENVIRONMENT; GRAM POSITIVE BACTERIUM; JAPAN; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; RADIATION DOSE; RNA SEQUENCE; SEQUENCE HOMOLOGY; STRAIN DIFFERENCE; TYPE STRAIN; ULTRAVIOLET RADIATION; CLASSIFICATION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; RNA GENE; SPECIES DIFFERENCE; WATER POLLUTION;

DEINOCOCCUS; DEINOCOCCUS DESERTI; DEINOCOCCUS HOPIENSIS; DEINOCOCCUS SONORENSIS; POSIBACTERIA;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DEINOCOCCUS; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; FRESH WATER; GENES, RRNA; JAPAN; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; WATER POLLUTION, RADIOACTIVE;

EID: 60549105434     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65762-0     Document Type: Article

References (34)

1. Anderson, A. W., Nordon, H. C., Cain, R. F., Parrish, G. & Duggan, D. (1956). Studies on a radio-resistant micrococcus. I. Isolation, morphology, cultural characteristics, and resistance to gamma radiation. Food Technol 10, 575-578.
2. Asker, D., Beppu, T. & Ueda, K. (2007a). Unique diversity of carotenoid-producing bacteria isolated from Misasa, a radioactive site in Japan. Appl Microbiol Biotechnol 77, 383-392.
3. Asker, D., Beppu, T. & Ueda, K. (2007b). Zeaxanthinibacter enoshimensis gen. nov., sp. nov., a novel zeaxanthin-producing marine bacterium of the family Flavobacteriaceae, isolated from seawater off Enoshima Island, Japan. Int J Syst Evol Microbiol 57, 837-843.
4. Asker, D., Beppu, T. & Ueda, K. (2007c). Sphingomonas jaspsi sp. nov., a novel carotenoid-producing bacterium isolated from Misasa, Tottori, Japan. Int J Syst Evol Microbiol 57, 1435-1441.
5. Asker, D., Beppu, T. & Ueda, K. (2007d). Sphingomonas astaxanthinifaciens sp. nov., a novel astaxanthin-producing bacterium of the family Sphingomonadaceae isolated from Misasa, Tottori, Japan. FEMS Microbiol Lett 273, 140-148.
6. Asker, D., Beppu, T. & Ueda, K. (2007e). Mesoflavibacter zeaxanthinifaciens gen. nov., sp. nov., a novel zeaxanthin-producing marine bacterium of the family Flavobacteriaceae. Syst Appl Microbiol 30, 291-296.
7. Barrow, G. I. & Feltham, R. K. A. (1993). Cowan and Steel's Manual for the Identification of Medical Bacteria, 3rd edn. London: Cambridge University Press.
8. VP emend. Rainey, Nobre, Schumann, Stackebrandt and da Costa 1997, 513. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 1, pp. 395-396. Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer.
9. VP emend. Rainey, Nobre, Schumann, Stackebrandt and da Costa 1997, 513. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 1, pp. 396-403. Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer.
10. Brooks, B. W. & Murray, R. G. E. (1981). Nomenclature for " Micrococcus radiodurans" and other radiation-resistant cocci: Deinococcaceae fam. nov. and Deinococcus gen. nov., including five species. Int J Syst Bacteriol 31, 353-360.
11. Callegan, R. P., Nobre, M. F., McTernan, P. M., Battista, J. R., Navarro-González, R., McKay, C. P., da Costa, M. S. & Rainey, F. A. (2008). Description of four novel psychrophilic, ionizing radiation-sensitive Deinococcus species from alpine environments. Int J Syst Evol Microbiol 58, 1252-1258.
12. Christensen, E. A. & Kristensen, H. (1981). Radiation-resistance of micro-organisms from air in clean premises. Acta Pathol Microbiol Scand [B] 89, 293-301.
13. Collins, M. D. (1994). Isoprenoid quinones. In Chemical Methods in Prokaryotic Systematics, pp. 265-310. Edited by M. Goodfellow & A. G. O'Donnell. Chichester: Wiley.
14. Davis, N. S., Silverman, G. J. & Masurovsky, E. B. (1963). Radiation-resistant, pigmented coccus isolated from haddock tissue. J Bacteriol 86, 294-298.
15. de Groot, A., Chapon, V., Servant, P., Christen, R., Saux, M. F., Sommer, S. & Heulin, T. (2005). Deinococcus deserti sp. nov., a gamma-radiation-tolerant bacterium isolated from the Sahara Desert. Int J Syst Evol Microbiol 55, 2441-2446.
16. Felsenstein, J. (1993). PHYLIP (phylogeny inference package), version 3.5. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
17. Ferreira, A. C., Nobre, M. F., Rainey, F. A., Silva, M. T., Wait, R., Burghardt, J., Chung, A. P. & da Costa, M. S. (1997). Deinococcus geothermalis sp. nov. and Deinococcus murrayi sp. nov., two extremely radiation-resistant and slightly thermophilic species from hot springs. Int J Syst Bacteriol 47, 939-947.
18. Halliwell, B. (1996). Free radicals, proteins and DNA: oxidative damage versus redox regulation. Biochem Soc Trans 24, 1023-1027.
19. Hirsch, P., Gallikowski, C. A., Siebert, J., Peissl, K., Kroppenstedt, R., Schumann, P., Stackebrandt, E. & Anderson, R. (2004). Deinococcus frigens sp. nov., Deinococcus saxicola sp. nov., and Deinococcus marmoris sp. nov., low temperature and draught-tolerating, UV-resistant bacteria from continental Antarctica. Syst Appl Microbiol 27, 636-645.
20. 228Ra in spring waters of Sanin district. Radioisotopes 32, 18-21 (in Japanese).
21. Kobatake, M., Tanabe, S. & Hasegawa, S. (1973). New Micrococcus radioresistant red pigment, isolated from Lama glama feces, and its use as a microbiological indicator of radiosterilization. C R Seances Soc Biol Fil 167, 1506-1510 (in French).
22. Lai, W. A., Kämpfer, P., Arun, A. B., Shen, F. T., Huber, B., Rekha, P. D. & Young, C. C. (2006). Deinococcus ficus sp. nov., isolated from the rhizosphere of Ficus religiosa L. Int J Syst Evol Microbiol 56, 787-791.
23. Mesbah, M. & Whitman, W. B. (1989). Measurement of deoxyguanosine/thymidine ratios in complex mixtures by high-performance liquid chromatography for determination of the mole percentage guanine + cytosine of DNA. J Chromatogr 479, 297-306.
24. O'Brien, M. & Colwell, R. (1987). Characterization tests for numerical taxonomic studies. Methods Microbiol 19, 69-104.
25. Perrière, G. & Gouy, M. (1996). WWW-query: an on-line retrieval system for biological sequence banks. Biochimie 78, 364-369.
26. Rainey, F. A., Nobre, M. F., Schumann, P., Stackebrandt, E. & da Costa, M. S. (1997). Phylogenetic diversity of the deinococci as determined by 16S ribosomal DNA sequence comparison. Int J Syst Bacteriol 47, 510-514.
27. Rainey, F. A., Ray, K., Ferreira, M., Gatz, B. Z., Nobre, M. F., Bagaley, D., Rash, B. A., Park, M. J., Earl, A. M. & other authors (2005). Extensive diversity of ionizing-radiation-resistant bacteria recovered from Sonoran Desert soil and description of nine new species of the genus Deinococcus obtained from a single soil sample. Appl Environ Microbiol 71, 5225-5235.
28. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
29. Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
30. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization, In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington: DC: American Society for Microbiology.
31. Suresh, K., Reddy, G. S., Sengupta, S. & Shivaji, S. (2004). Deinococcus indicus sp. nov., an arsenic-resistant bacterium from an aquifer in West Bengal, India. Int J Syst Evol Microbiol 54, 457-461.
32. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
33. Tindall, B. J. (1990). Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66, 199-202.
34. Zhang, Y. Q., Sun, C. H., Li, W. J., Yu, L. Y., Zhou, J. Q., Zhang, Y. Q., Xu, L. H. & Jiang, C. L. (2007). Deinococcus yunweiensis sp. nov., a gamma- and UV-radiation-resistant bacterium from China. Int J Syst Evol Microbiol 57, 370-375.