메뉴 건너뛰기




Volumn 139, Issue 4, 2009, Pages 265-272

In vitro and in vivo production and purification of circular RNA aptamer

Author keywords

Circular RNA aptamer; In vivo expression; Self splicing; Solid phase DNA probe method

Indexed keywords

ALTERNATIVE METHODS; ANION-EXCHANGE CHROMATOGRAPHIES; APTAMER; APTAMERS; CELL EXTRACTS; CIRCULAR RNA APTAMER; E. COLI; ESCHERICHIA COLI CELLS; EXON SEQUENCES; GEL ELECTROPHORESIS; HELA CELLS; IN VIVO EXPRESSION; IN-VITRO; RNA MOLECULES; RNA THERAPEUTICS; SELF-SPLICING; SOLID-PHASE DNA PROBE METHOD; STREPTAVIDIN;

EID: 60549105176     PISSN: 01681656     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jbiotec.2008.12.012     Document Type: Article
Times cited : (48)

References (34)
  • 1
    • 0029096025 scopus 로고
    • An efficient strategy for the synthesis of circular RNA molecules
    • Beaudry D., and Perreault J.P. An efficient strategy for the synthesis of circular RNA molecules. Nucleic Acids Res. 23 (1995) 3064-3066
    • (1995) Nucleic Acids Res. , vol.23 , pp. 3064-3066
    • Beaudry, D.1    Perreault, J.P.2
  • 2
    • 0030728119 scopus 로고    scopus 로고
    • TAR RNA decoys inhibit tat-activated HIV-1 transcription after preinitiation complex formation
    • Bohjanen P.R., Liu Y., and Garcia-Blanco M.A. TAR RNA decoys inhibit tat-activated HIV-1 transcription after preinitiation complex formation. Nucleic Acids Res. 25 (1997) 4481-4486
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4481-4486
    • Bohjanen, P.R.1    Liu, Y.2    Garcia-Blanco, M.A.3
  • 5
    • 0032254089 scopus 로고    scopus 로고
    • Internal ribosome entry sites tests with circular mRNAs
    • Chen C.Y., and Sarnow P. Internal ribosome entry sites tests with circular mRNAs. Methods Mol. Biol. 77 (1998) 355-363
    • (1998) Methods Mol. Biol. , vol.77 , pp. 355-363
    • Chen, C.Y.1    Sarnow, P.2
  • 6
    • 0023277545 scopus 로고
    • Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
    • Chomczynski P., and Sacchi N. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162 (1987) 156-159
    • (1987) Anal. Biochem. , vol.162 , pp. 156-159
    • Chomczynski, P.1    Sacchi, N.2
  • 7
    • 0024558335 scopus 로고
    • One-step preparation of competent Escherichia coli: transformation and storage of bacterial cells in the same solution
    • Chung C.T., Niemela S.L., and Miller R.H. One-step preparation of competent Escherichia coli: transformation and storage of bacterial cells in the same solution. Proc. Natl. Acad. Sci. U.S.A. 86 (1989) 2172-2175
    • (1989) Proc. Natl. Acad. Sci. U.S.A. , vol.86 , pp. 2172-2175
    • Chung, C.T.1    Niemela, S.L.2    Miller, R.H.3
  • 8
    • 33846821787 scopus 로고    scopus 로고
    • Systematic screening of LNA/2′-O-methyl chimeric derivatives of a TAR RNA aptamer
    • Di Primo C., Rudloff I., Reigadas S., Arzumanov A.A., Gait M.J., and Toulme J.J. Systematic screening of LNA/2′-O-methyl chimeric derivatives of a TAR RNA aptamer. FEBS Lett. 581 (2007) 771-774
    • (2007) FEBS Lett. , vol.581 , pp. 771-774
    • Di Primo, C.1    Rudloff, I.2    Reigadas, S.3    Arzumanov, A.A.4    Gait, M.J.5    Toulme, J.J.6
  • 9
    • 0025074907 scopus 로고
    • In vitro selection of RNA molecules that bind specific ligands
    • Ellington A.D., and Szostak J.W. In vitro selection of RNA molecules that bind specific ligands. Nature 346 (1990) 818-822
    • (1990) Nature , vol.346 , pp. 818-822
    • Ellington, A.D.1    Szostak, J.W.2
  • 10
    • 0030667757 scopus 로고    scopus 로고
    • Synthesis and two-dimensional electrophoretic analysis of mixed populations of circular and linear RNAs
    • Feldstein P.A., Levy L., Randles J.W., and Owens R.A. Synthesis and two-dimensional electrophoretic analysis of mixed populations of circular and linear RNAs. Nucleic Acids Res. 25 (1997) 4850-4854
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4850-4854
    • Feldstein, P.A.1    Levy, L.2    Randles, J.W.3    Owens, R.A.4
  • 11
    • 0028204770 scopus 로고
    • Synthesis of circular RNA in bacteria and yeast using RNA cyclase ribozymes derived from a group I intron of phage T4
    • Ford E., and Ares Jr. M. Synthesis of circular RNA in bacteria and yeast using RNA cyclase ribozymes derived from a group I intron of phage T4. Proc. Natl. Acad. Sci. U.S.A. 91 (1994) 3117-3121
    • (1994) Proc. Natl. Acad. Sci. U.S.A. , vol.91 , pp. 3117-3121
    • Ford, E.1    Ares Jr., M.2
  • 13
    • 31044444460 scopus 로고    scopus 로고
    • Inhibition of RNAse A family enzymes prevents degradation and loss of silencing activity of siRNAs in serum
    • Haupenthal J., Baehr C., Kiermayer S., Zeuzem S., and Piiper A. Inhibition of RNAse A family enzymes prevents degradation and loss of silencing activity of siRNAs in serum. Biochem. Pharmacol. 71 (2006) 702-710
    • (2006) Biochem. Pharmacol. , vol.71 , pp. 702-710
    • Haupenthal, J.1    Baehr, C.2    Kiermayer, S.3    Zeuzem, S.4    Piiper, A.5
  • 14
    • 34248593248 scopus 로고    scopus 로고
    • RNase A-like enzymes in serum inhibit the anti-neoplastic activity of siRNA targeting polo-like kinase 1
    • Haupenthal J., Baehr C., Zeuzem S., and Piiper A. RNase A-like enzymes in serum inhibit the anti-neoplastic activity of siRNA targeting polo-like kinase 1. Int. J. Cancer 121 (2007) 206-210
    • (2007) Int. J. Cancer , vol.121 , pp. 206-210
    • Haupenthal, J.1    Baehr, C.2    Zeuzem, S.3    Piiper, A.4
  • 15
    • 34248594744 scopus 로고    scopus 로고
    • Combinatorial selection of a RNA thioaptamer that binds to Venezuelan equine encephalitis virus capsid protein
    • Kang J., Lee M.S., Watowich S.J., and Gorenstein D.G. Combinatorial selection of a RNA thioaptamer that binds to Venezuelan equine encephalitis virus capsid protein. FEBS Lett. 581 (2007) 2497-2502
    • (2007) FEBS Lett. , vol.581 , pp. 2497-2502
    • Kang, J.1    Lee, M.S.2    Watowich, S.J.3    Gorenstein, D.G.4
  • 16
    • 33846446409 scopus 로고    scopus 로고
    • Rapid purification of RNAs using fast performance liquid chromatography (FPLC)
    • Kim I., McKenna S.A., Puglisi V.E., and Puglisi J.D. Rapid purification of RNAs using fast performance liquid chromatography (FPLC). RNA 13 (2007) 289-294
    • (2007) RNA , vol.13 , pp. 289-294
    • Kim, I.1    McKenna, S.A.2    Puglisi, V.E.3    Puglisi, J.D.4
  • 17
    • 33947719235 scopus 로고    scopus 로고
    • Combining SELEX and the yeast three-hybrid system for in vivo selection and classification of RNA aptamers
    • Konig J., Julius C., Baumann S., Homann M., Goringer H.U., and Feldbrugge M. Combining SELEX and the yeast three-hybrid system for in vivo selection and classification of RNA aptamers. RNA 13 (2007) 614-622
    • (2007) RNA , vol.13 , pp. 614-622
    • Konig, J.1    Julius, C.2    Baumann, S.3    Homann, M.4    Goringer, H.U.5    Feldbrugge, M.6
  • 19
    • 1942501609 scopus 로고    scopus 로고
    • Large-scale preparation and purification of polyacrylamide-free RNA oligonucleotides
    • Lukavsky P.J., and Puglisi J.D. Large-scale preparation and purification of polyacrylamide-free RNA oligonucleotides. RNA 10 (2004) 889-893
    • (2004) RNA , vol.10 , pp. 889-893
    • Lukavsky, P.J.1    Puglisi, J.D.2
  • 21
    • 0031718582 scopus 로고    scopus 로고
    • Circular mRNA can direct translation of extremely long repeating-sequence proteins in vivo
    • Perriman R., and Ares Jr. M. Circular mRNA can direct translation of extremely long repeating-sequence proteins in vivo. RNA 4 (1998) 1047-1054
    • (1998) RNA , vol.4 , pp. 1047-1054
    • Perriman, R.1    Ares Jr., M.2
  • 22
    • 0026337408 scopus 로고
    • Kinetic characterization of ribonuclease-resistant 2′-modified hammerhead ribozymes
    • Pieken W.A., Olsen D.B., Benseler F., Aurup H., and Eckstein F. Kinetic characterization of ribonuclease-resistant 2′-modified hammerhead ribozymes. Science 253 (1991) 314-317
    • (1991) Science , vol.253 , pp. 314-317
    • Pieken, W.A.1    Olsen, D.B.2    Benseler, F.3    Aurup, H.4    Eckstein, F.5
  • 23
    • 34547659860 scopus 로고    scopus 로고
    • Recombinant RNA technology: the tRNA scaffold
    • Ponchon L., and Dardel F. Recombinant RNA technology: the tRNA scaffold. Nat. Methods 4 (2007) 571-576
    • (2007) Nat. Methods , vol.4 , pp. 571-576
    • Ponchon, L.1    Dardel, F.2
  • 24
    • 0026737788 scopus 로고
    • Group I permuted intron-exon (PIE) sequences self-splice to produce circular exons
    • Puttaraju M., and Been M.D. Group I permuted intron-exon (PIE) sequences self-splice to produce circular exons. Nucleic Acids Res. 20 (1992) 5357-5364
    • (1992) Nucleic Acids Res. , vol.20 , pp. 5357-5364
    • Puttaraju, M.1    Been, M.D.2
  • 25
    • 0027290513 scopus 로고
    • A circular trans-acting hepatitis delta virus ribozyme
    • Puttaraju M., Perrotta A.T., and Been M.D. A circular trans-acting hepatitis delta virus ribozyme. Nucleic Acids Res. 21 (1993) 4253-4258
    • (1993) Nucleic Acids Res. , vol.21 , pp. 4253-4258
    • Puttaraju, M.1    Perrotta, A.T.2    Been, M.D.3
  • 26
    • 0029911523 scopus 로고    scopus 로고
    • Circular ribozymes generated in Escherichia coli using group I self-splicing permuted intron-exon sequences
    • Puttaraju M., and Been M.D. Circular ribozymes generated in Escherichia coli using group I self-splicing permuted intron-exon sequences. J. Biol. Chem. 271 (1996) 26081-26087
    • (1996) J. Biol. Chem. , vol.271 , pp. 26081-26087
    • Puttaraju, M.1    Been, M.D.2
  • 28
    • 0021008593 scopus 로고
    • A two-dimensional electrophoretic technique for the detection of circular viroids and virosoids
    • Schumacher J., Randles J.W., and Riesner D. A two-dimensional electrophoretic technique for the detection of circular viroids and virosoids. Anal. Biochem. 135 (1983) 288-295
    • (1983) Anal. Biochem. , vol.135 , pp. 288-295
    • Schumacher, J.1    Randles, J.W.2    Riesner, D.3
  • 29
    • 0344926320 scopus 로고    scopus 로고
    • Cationic liposome-mediated delivery of siRNAs in adult mice
    • Sioud M., and Sorensen D.R. Cationic liposome-mediated delivery of siRNAs in adult mice. Biochem. Biophys. Res. Commun. 312 (2003) 1220-1225
    • (2003) Biochem. Biophys. Res. Commun. , vol.312 , pp. 1220-1225
    • Sioud, M.1    Sorensen, D.R.2
  • 30
    • 0141552295 scopus 로고    scopus 로고
    • Gene silencing by systemic delivery of synthetic siRNAs in adult mice
    • Sorensen D.R., Leirdal M., and Sioud M. Gene silencing by systemic delivery of synthetic siRNAs in adult mice. J. Mol. Biol. 327 (2003) 761-766
    • (2003) J. Mol. Biol. , vol.327 , pp. 761-766
    • Sorensen, D.R.1    Leirdal, M.2    Sioud, M.3
  • 31
    • 0035001466 scopus 로고    scopus 로고
    • Streptavidin aptamers: affinity tags for the study of RNAs and ribonucleoproteins
    • Srisawat C., and Engelke Q.R. Streptavidin aptamers: affinity tags for the study of RNAs and ribonucleoproteins. RNA 7 (2001) 632-641
    • (2001) RNA , vol.7 , pp. 632-641
    • Srisawat, C.1    Engelke, Q.R.2
  • 32
    • 0037011177 scopus 로고    scopus 로고
    • Taurine as a constituent of mitochondrial tRNAs: new insights into the functions of taurine and human mitochondrial diseases
    • Suzuki T., Suzuki T., Wada T., Saigo K., and Watanabe K. Taurine as a constituent of mitochondrial tRNAs: new insights into the functions of taurine and human mitochondrial diseases. EMBO J. 21 (2002) 6581-6589
    • (2002) EMBO J. , vol.21 , pp. 6581-6589
    • Suzuki, T.1    Suzuki, T.2    Wada, T.3    Saigo, K.4    Watanabe, K.5
  • 33
    • 0025194307 scopus 로고
    • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
    • Tuerk C., and Gold L. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 249 (1990) 505-510
    • (1990) Science , vol.249 , pp. 505-510
    • Tuerk, C.1    Gold, L.2
  • 34
    • 33845530239 scopus 로고    scopus 로고
    • MALDI-TOF mass spectral analysis of siRNA degradation in serum confirms an RNase A-like activity
    • Turner J.J., Jones S.W., Moschos S.A., Lindsay M.A., and Gait M.J. MALDI-TOF mass spectral analysis of siRNA degradation in serum confirms an RNase A-like activity. Mol. BioSystems 3 (2007) 43-50
    • (2007) Mol. BioSystems , vol.3 , pp. 43-50
    • Turner, J.J.1    Jones, S.W.2    Moschos, S.A.3    Lindsay, M.A.4    Gait, M.J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.