Paraliobacillus quinghaiensis sp. nov., isolated from salt-lake sediment in China

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 1, 2009, Pages 28-33

  Chen, Yi Guang ^a,b   Cui, Xiao Long ^a   Zhang, Yu Qin ^a,c   Li, Wen Jun ^a   Wang, Yong Xia ^a   Xu, Li Hua ^a   Wen, Meng Liang ^a   Peng, Qian ^a   Jiang, Cheng Lin ^a  

^a YUNNAN UNIVERSITY   (China)

^b JISHOU UNIVERSITY   (China)

^c INSTITUTE OF MEDICINAL BIOTECHNOLOGY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CATALASE; DIAMINOPIMELIC ACID; GENOMIC DNA; MENAQUINONE; MENAQUINONE 7; OXIDOREDUCTASE; PHOSPHATIDYLCHOLINE; PHOSPHATIDYLETHANOLAMINE; RNA 16S; UNCLASSIFIED DRUG; BACTERIAL DNA; FRESH WATER; RIBOSOME DNA; SODIUM CHLORIDE;

AEROBIC BACTERIUM; ARTICLE; BACTERIAL CELL WALL; BACTERIAL FLAGELLUM; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; CHEMOTAXONOMY; CHINA; CONTROLLED STUDY; DNA CONTENT; DNA DNA HYBRIDIZATION; FATTY ACID ANALYSIS; GRAM POSITIVE BACTERIUM; LAKE SEDIMENT; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PARALIOBACILLUS QUINGHAIENSIS; PARALIOBACILLUS RYUKYUENSIS; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; SALT LAKE; BACILLACEAE; BACTERIUM IDENTIFICATION; CLASSIFICATION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; NUCLEIC ACID HYBRIDIZATION; PHENOTYPE; PHYSIOLOGY; RNA GENE; SEDIMENT; SPECIES DIFFERENCE;

BACTERIA (MICROORGANISMS); PARALIOBACILLUS; PARALIOBACILLUS RYUKYUENSIS; POSIBACTERIA;

BACILLACEAE; BACTERIAL TYPING TECHNIQUES; CHINA; DNA, BACTERIAL; DNA, RIBOSOMAL; FRESH WATER; GENES, RRNA; GEOLOGIC SEDIMENTS; NUCLEIC ACID HYBRIDIZATION; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SODIUM CHLORIDE; SPECIES SPECIFICITY;

EID: 60549084236     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65735-0     Document Type: Article

References (51)

1. An, S.-Y., Asahara, M., Goto, K., Kasai, H. & Yokota, A. (2007a). Terribacillus saccharophilus gen. nov., sp. nov. and Terribacillus halophilus sp. nov., spore-forming bacteria isolated from field soil in Japan. Int J Syst Evol Microbiol 57, 51-55.
2. An, S.-Y., Ishikawa, S., Kasai, H., Goto, K. & Yokota, A. (2007b). Amphibacillus sediminis sp. nov., an endospore-forming bacterium isolated from lake sediment in Japan. Int J Syst Evol Microbiol 57, 2489-2492.
3. Ash, C., Farrow, J. A. E., Wallbanks, S. & Collins, M. D. (1991). Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small-subunit-ribosomal RNA sequences. Lett Appl Microbiol 13, 202-206.
4. Atlas, R. M. (1993). Handbook of Microbiological Media. Edited by L. C. Parks. Boca Raton, FL: CRC Press.
5. Carrasco, I. J., Márquez, M. C., Xue, Y., Ma, Y., Cowan, D. A., Jones, B. E., Grant, W. D. & Ventosa, A. (2007). Salsuginibacillus kocurii gen. nov., sp. nov., a moderately halophilic bacterium from soda-lake sediment. Int J Syst Evol Microbiol 57, 2381-2386.
6. Chen, Y.-G., Cui, X.-L., Pukall, R., Li, H.-M., Yang, Y.-L., Xu, L.-H., Wen, M.-L., Peng, Q. & Jiang, C.-L. (2007). Salinicoccus kunmingensis sp. nov., a moderately halophilic bacterium isolated from a salt mine in Yunnan, southwest China. Int J Syst Evol Microbiol 57, 2327-2332.
7. Collins, M. D. & Jones, D. (1980). Lipids in the classification and identification of coryneform bacteria containing peptidoglycans based on 2,4-diaminobutyric acid. J Appl Bacteriol 48, 459-470.
8. Cui, X.-L., Mao, P.-H., Zeng, M., Li, W.-J., Zhang, L.-P., Xu, L.-H. & Jiang, C.-L. (2001). Streptomonospora salina gen. nov., sp. nov., a new member of the family Nocardiopsaceae. Int J Syst Evol Microbiol 51, 357-363.
9. Echigo, A., Fukushima, T., Mizuki, T., Kamekura, M. & Usami, R. (2007). Halalkalibacillus halophilus gen. nov., sp. nov., a novel moderately halophilic and alkaliphilic bacterium isolated from a non-saline soil sample in Japan. Int J Syst Evol Microbiol 57, 1081-1085.
10. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in micro-dilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
11. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
12. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
13. Felsenstein, J. (1993). PHYLIP (phylogeny inference package) version 3.5.1. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
14. Garabito, M. J., Arahal, D. R., Mellado, E., Márquez, M. C. & Ventosa, A. (1997). Bacillus salexigens sp. nov., a new moderately halophilic Bacillus species. Int J Syst Bacteriol 47, 735-741.
15. García, M. T., Gallego, V., Ventosa, A. & Mellado, E. (2005). Thalassobacillus devorans gen. nov., sp. nov., a moderately halophilic, phenol-degrading, Gram-positive bacterium. Int J Syst Evol Microbiol 55, 1789-1795.
16. Gerhardt, P., Murray, R. G. E., Costilow, R. N., Nester, E. W., Wood, W. A., Krieg, N. R. & Phillips, G. B. (editors) (1981). Manual of Methods for General Bacteriology. Washington, DC: American Society for Microbiology.
17. Gregersen, T. (1978). Rapid method for distinction of Gram-negative from Gram-positive bacteria. Eur J Appl Microbiol Biotechnol 5, 123-127.
18. Groth, I., Schumann, P., Weiss, N., Martin, K. & Rainey, F. A. (1996). Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall. Int J Syst Bacteriol 46, 234-239.
19. Hasegawa, T., Takizawa, M. & Tanida, S. (1983). A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 29, 319-322.
20. Heyndrickx, M., Lebbe, L., Kersters, K., Hoste, B., De Wachter, R., De Vos, P., Forsyth, G. & Logan, N. A. (1999). Proposal of Virgibacillus proomii sp. nov. and emended description of Virgibacillus pantothenticus (Proom and Knight 1950) Heyndrickx et al. 1998. Int J Syst Bacteriol 49, 1083-1090.
21. Hopwood, D. A., Bibb, M. J., Chater, K. F., Kieser, T., Bruton, C. J., Kieser, H. M., Lydiate, D. J., Smith, C. P. & Ward, J. M. (1985). Preparation of chromosomal, plasmid and phage DNA. In Genetic Manipulation of Streptomyces - a Laboratory Manual, pp. 79-80. Norwich, UK: F. Crowe & Sons.
22. Ishikawa, M., Ishizaki, S., Yamamoto, Y. & Yamasato, K. (2002). Paraliobacillus ryukyuensis gen., sp. nov., a new Gram-positive, slightly halophilic, extremely halotolerant, facultative anaerobe isolated from a decomposing marine alga. J Gen Appl Microbiol 48, 269-279.
23. Ishikawa, M., Ishizaki, S., Yamamoto, Y. & Yamasato, K. (2003). Paraliobacillus ryukyuensis gen. nov., sp. nov., a new Gram-positive, slightly halophilic, extremely halotolerant, facultative anaerobe isolated from a decomposing marine alga. In Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSEM, List no. 91. Int J Syst Evol Microbiol 53, 627-628.
24. Ishikawa, M., Nakajima, K., Itamiya, Y., Furukawa, S., Yamamoto, Y. & Yamasato, K. (2005). Halolactibacillus halophilus gen. nov., sp. nov. and Halolactibacillus miurensis sp. nov., halophilic and alkaliphilic marine lactic acid bacteria constituting a phylogenetic lineage in Bacillus rRNA group 1. Int J Syst Evol Microbiol 55, 2427-2439.
25. Jeon, C. O., Lim, J.-M., Lee, J.-M., Xu, L.-H., Jiang, C.-L. & Kim, C.-J. (2005). Reclassification of Bacillus haloalkaliphilus Fritze 1996 as Alkalibacillus haloalkaliphilus gen. nov., comb. nov. and the description of Alkalibacillus salilacus sp. nov., a novel halophilic bacterium isolated from a salt lake in China. Int J Syst Evol Microbiol 55, 1891-1896.
26. Kim, Y.-G., Hwang, C. Y., Yoo, K. W., Moon, H. T., Yoon, J.-H. & Cho, B. C. (2007). Pelagibacillus goriensis gen. nov., sp. nov., a moderately halotolerant bacterium isolated from coastal water off the east coast of Korea. Int J Syst Evol Microbiol 57, 1554-1560.
27. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
28. Kluge, A. G. & Farris, F. S. (1969). Quantitative phyletics and the evolution of anurans. Syst Zool 18, 1-32.
29. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinform 5, 150-163.
30. Kushner, D. J. (1993). Growth and nutrition of halophilic bacteria, In The Biology of Halophilic Bacteria, pp. 87-103. Edited by R. H. Vreeland & L. I. Hochstein. Boca Raton, FL: CRC Press.
31. Lim, J.-M., Jeon, C. O., Song, S. M. & Kim, C.-J. (2005). Pontibacillus chungwhensis gen. nov., sp. nov., a moderately halophilic Gram-positive bacterium from a solar saltern in Korea. Int J Syst Evol Microbiol 55, 165-170.
32. Lu, J., Nogi, Y. & Takami, H. (2001). Oceanobacillus iheyensis gen. nov., sp. nov., a deep-sea extremely halotolerant and alkaliphilic species isolated from a depth of 1050 m on the Iheya Ridge. FEMS Microbiol Lett 205, 291-297.
33. Mandel, M. & Marmur, J. (1968). Use of ultraviolet absorbance-temperature profile for determining the guanine plus cytosine content of DNA. Methods Enzymol 12B, 195-206.
34. Mayr, R., Busse, H.-J., Worliczek, H. L., Ehling-Schulz,M. & Scherer, S. (2006). Ornithinibacillus gen. nov., with the species Ornithinibacillus bavariensis sp. nov. and Ornithinibacillus californiensis sp. nov. Int J Syst Evol Microbiol 56, 1383-1389.
35. Minnikin, D. E., Collins, M. D. & Goodfellow, M. (1979). Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. J Appl Bacteriol 47, 87-95.
36. Niimura, Y., Koh, E., Yanagida, F., Suzuki, K., Komagata, K. & Kozaki, M. (1990). Amphibacillus xylanus gen. nov., sp. nov., a facultatively anaerobic sporeforming xylan-digesting bacterium which lacks cytochrome, quinone, and catalase. Int J Syst Bacteriol 40, 297-301.
37. Nunes, I., Tiago, I., Pires, A. L., Costa, M. S. & Veíssimo, A. (2006). Paucisalibacillus globulus gen. nov., sp. nov., a Gram-positive bacterium isolated from potting soil. Int J Syst Evol Microbiol 56, 1841-1845.
38. Ren, P. G. & Zhou, P. J. (2005a). Tenuibacillus multivorans gen. nov., sp. nov., a moderately halophilic bacterium isolated from saline soil in Xin-Jiang, China. Int J Syst Evol Microbiol 55, 95-99.
39. Ren, P. G. & Zhou, P. J. (2005b). Salinibacillus aidingensis gen. nov., sp. nov. and Salinibacillus kushneri sp. nov., moderately halophilic bacteria isolated from a neutral saline lake in Xin-Jiang, China. Int J Syst Evol Microbiol 55, 949-953.
40. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
41. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids. USFCC Newsl 20, 16.
42. Schlesner, H., Lawson, P. A., Collins, M. D., Weiss, N., Wehmeyer, U., Völker, H. & Thomm, M. (2001). Filobacillus milensis gen. nov., sp. nov., a new halophilic spore-forming bacterium with Orn-D-Glu-type peptidoglycan. Int J Syst Evol Microbiol 51, 425-431.
43. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
44. Smibert, R. M. & Krieg, N. R. (1981). General characterization. In Manual of Methods for General Microbiology, pp. 409-443. Edited by P. Gerhardt, R. G. E. Murray, R. N. Costilow, E. W. Nester, W. A. Wood, N. R. Krieg & G. B. Phillips. Washington, DC: American Society for Microbiology.
45. Spring, S., Ludwig, W., Marquez, M. C., Ventosa, A. & Schleifer, K.-H. (1996). Halobacillus gen. nov., with descriptions of Halobacillus litoralis sp. nov. and Halobacillus trueperi sp. nov., and transfer of Sporosarcina halophila to Halobacillus halophilus comb. nov. Int J Syst Bacteriol 46, 492-496.
46. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
47. Ventosa, A., Quesada, E., Rodriguez-Valera, F., Ruiz-Berraquero, F. & Ramos-Cormenzana, A. (1982). Numerical taxonomy of moderately halophilic Gram-negative rods. J Gen Microbiol 128, 1959-1968.
48. Wainø, M., Tindall, B. J., Schumann, P. & Ingvorsen, K. (1999). Gracilibacillus gen. nov., with description of Gracilibacillus halotolerans gen. nov., sp. nov.; transfer of Bacillus dipsosauri to Gracilibacillus dipsosauri comb. nov., and Bacillus salexigens to the genus Salibacillus gen. nov., as Salibacillus salexigens comb. nov. Int J Syst Bacteriol 49, 821-831.
49. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
50. Yoon, J.-H., Kang, K. H. & Park, Y.-H. (2002). Lentibacillus salicampi gen. nov., sp. nov., a moderately halophilic bacterium isolated from a salt field in Korea. Int J Syst Evol Microbiol 52, 2043-2048.
51. Zhilina, T. N., Garnova, E. S., Tourova, T. P., Kostrikina, N. A. & Zavarzin, G. A. (2001). Amphibacillus fermentum sp. nov. and Amphibacillus tropicus sp. nov., new alkaliphilic, facultatively anaerobic, saccharolytic bacilli from Lake Magadi. Microbiology (English translation of Mikrobiologiia) 70, 711-722.