Salsuginibacillus kocurii gen. nov., sp. nov., a moderately halophilic bacterium from soda-lake sediment

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 10, 2007, Pages 2381-2386

  Carrasco, I J ^a   Marquez M C ^a   Xue, Y ^b   Ma, Y ^b   Cowan, D A ^c   Jones, B E ^d   Grant, W D ^e   Ventosa, A ^a  

^a UNIVERSITY OF SEVILLE   (Spain)

^b INSTITUTE OF MICROBIOLOGY   (China)

^c UNIVERSITY OF THE WESTERN CAPE   (South Africa)

^d Genencor International BV   (Netherlands)

^e UNIVERSITY OF LEICESTER   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BACITRACIN; BACTERIAL DNA; BACTERIAL RNA; CARDIOLIPIN; CEFALOTIN; CYTOSINE; DIAMINOPIMELIC ACID; FATTY ACID; GUANINE; KANAMYCIN; NALIDIXIC ACID; PENICILLIN G; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; PHOSPHOLIPID; QUINONE DERIVATIVE; RNA 16S; STREPTOMYCIN; TETRACYCLINE; VANCOMYCIN;

ANTIBIOTIC RESISTANCE; ANTIBIOTIC SENSITIVITY; ARTICLE; BACILLUS; BACTERIAL CELL; BACTERIAL CELL WALL; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; CELL MOTILITY; CELL SHAPE; CHEMOTAXONOMY; CHINA; CONTROLLED STUDY; DNA CONTENT; ENDOSPORE-FORMING RODS AND COCCI; FATTY ACID ANALYSIS; GENOTYPE; GRAM POSITIVE BACTERIUM; HALOPHILIC BACTERIUM; LAKE SEDIMENT; MARINOCOCCUS; MOLECULAR PHYLOGENY; NEW GENUS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHENOTYPE; PRIORITY JOURNAL; RNA SEQUENCE; SALSUGINIBACILLUS KOCURII; SEQUENCE HOMOLOGY; SPECIES DIFFERENTIATION; TEMPERATURE DEPENDENCE; THALASSOBACILLUS DEVORANS;

BACILLACEAE; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CELL WALL; DIAMINOPIMELIC ACID; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GENES, RRNA; GEOLOGIC SEDIMENTS; HYDROGEN-ION CONCENTRATION; LOCOMOTION; MOLECULAR SEQUENCE DATA; MONGOLIA; PHOSPHOLIPIDS; PHYLOGENY; QUINONES; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SODIUM CHLORIDE; SPORES, BACTERIAL; TEMPERATURE;

BACILLUS (BACTERIUM); BACTERIA (MICROORGANISMS); HALOBACILLUS; MARINOCOCCUS; POSIBACTERIA; THALASSOBACILLUS DEVORANS;

EID: 35648972701     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65136-0     Document Type: Article

References (34)

1. Amoozegar, M. A., Malekzadeh, F., Malik, K A., Schumann, P. & Spröer, C. (2003). Halobacillus karajensis sp. nov., a novel moderate halophile. Int J Syst Evol Microbiol 53, 1059-1063.
2. AL. In Bergey's Manual of Systematic Bacteriology, vol. 2, pp. 1105-1139. Edited by P. H. A. Sneath, N. S. Mair, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
3. Duckworth, A. W, Grant W. D., Jones, B. E. & van Steenbergen, R. (1996). Phylogenetic diversity of soda lake alkaliphiles. FEMS Microbiol Ecol 19, 181-191.
4. Dussault, H. P. (1955). An improved technique for staining red halophilic bacteria. J Bacteriol 70, 484-485.
5. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: A maximum likelihood approach. J Mol Evol 17, 368-376.
6. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
7. García, M. T., Ventosa, A., Ruiz-Berraquero, F. & Kocur, M. (1987). Taxonomic study and amended description of Vibrio, costicola. Int J Syst Bacteriol 37, 251-256.
8. García, M. T., Gallego, V., Ventosa, A. & Mellado, E. (2005). Thalassobacillus devorans gen. nov., sp. nov., a moderately halophilic, phenol-degrading, Gram-positive bacterium. Int J Syst Evol Microbiol 55, 1789-1795.
9. Gomori, G. (1955). Preparation of buffers for use in enzyme studies. Methods Enzymol 1, 138-146.
10. Hao, M. V., Kocur, M. & Komagata, K. (1984). Marinococcus gen. nov., a new genus for motile cocci with meso-diaminopimelic acid in the cell wall; and Marinococcus albus sp. nov. and Marinococcus halophilus (Novitsky and Kushner) comb. nov. J Gen Appl Microbiol 30, 449-459.
11. Kushner, D. J. & Kamekura, M. (1988). Physiology of halophilic eubacteria. In Halophilic Bacteria, vol. 1, pp. 109-140. Edited by F. Rodríguez-Valera. Boca Raton, FL: CRC Press.
12. Li, W.-J., Schumann, P., Zhang, Y.-Q., Chen, G.-Z., Tian, X.-P., Xu, L.-H., Stackebrandt E. & Jiang, C.-L. (2005). Marinococcus halotolerans sp. nov., isolated from Qinghai, north-west China. Int J Syst Evol Microbiol 55, 1801-1804.
13. Lim, J.-M., Jeon, C. O. & Kim, C.-J. (2006). Bacillus taeanensis sp. nov., a halophilic Gram-positive bacterium from a solar saltern in Korea. Int J Syst Evol Microbiol 56, 2903-2908.
14. Liu, W. Y., Zeng, J, Wang, L, Dou, Y. T. & Yang, S. S. (2005). Halobacillus dabanensis sp. nov. and Halobacillus aidingensis sp. nov., isolated from salt lakes in Xinjiang, China. Int J Syst Evol Microbiol 55, 1991-1996.
15. Ludwig, W., Strunk O., Westram, R., Richter, L, Meier, H., Yadhukumar, Buchner, A., Lai, T., Steppi, S. & other authors (2004). ARB: A software environment for sequence data. Nucleic Acids Res 32, 1363-1371.
16. Maidak, B. L., Olsen, G. J., Larson, N., Overbeek, R., McCaughey, M. J. & Woese, C. R. (1996). The Ribosomal Database Project (RDP). Nucleic Acids Res 24, 82-85.
17. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
18. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
19. Márquez, M. C., Ventosa, A. & Ruiz-Berraquero, F. (1992). Phenotypic and chemotaxonomic characterization of Marinococcus halophilus. Syst Appl Microbiol 15, 63-69.
20. Mellado, E., Moore, E. R. B., Nieto, J. J. & Ventosa, A. (1995). Phylogenetic inferences and taxonomic consequences of 16S ribosomal DNA sequence comparison of Chromohalobacter marismortui, Volcaniella eurihalina and Deleya salina, and reclassification of V. eurihalina as Halomonas eurihalina comb. nov. Int J Syst Bacteriol 45, 712-716.
21. Nielsen, P., Fritze, D. & Priest F. G. (1995). Phenetic diversity of alkaliphilic Bacillus strains: Proposal for nine new species. Microbiology 141, 1745-1761.
22. Owen, R. J. & Hill, L. R. (1979). The estimation of base compositions, base pairing and genome size of bacterial deoxyribonucleic acids. In Identification Methods for Microbiologists, 2nd edn, pp. 217-296. Edited by F. A. Skinner & D. W. Lovelock. London: Academic Press.
23. Quesada, E., Ventosa, A., Ruiz-Berraquero, F. & Ramos-Cormenzana, A. (1984). Deleya halophila, a newspecies ofmoderately halophilic bacteria. Int J Syst Bacteriol 34, 287-292.
24. Rodriguez-Valera, F., Ruiz-Berraquero, F. & Ramos-Cormenzana, A. (1980). Isolation of extremely halophilic bacteria able to grow in defined inorganic media with single carbon sources. J Gen Microbiol 119, 535-538.
25. Saitou, N. & Nei, M. (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
26. Schleifer, K H. (1985). Analysis of the chemical composition and primary structure of murein. Methods Microbiol 18, 123-156.
27. Shida, O., Takagi, H., Kadowaki, K., Nakamura, L. K. & Komagata, K (1997). Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus. Int J Syst Bacteriol 47, 289-298.
28. Spring, S., Ludwig, W., Marquez, M. C., Ventosa, A. & Schleifer, K.-H. (1996). Halobacillus gen. nov., with descriptions of Halobacillus litoralis sp. nov. and Halobacillus trueperi sp. nov., and transfer of Sporosarcina halophila to Halobacillus halophilus comb. nov. Int J Syst Bacteriol 46, 492-496.
29. Ventosa, A., Quesada, E., Rodriguez-Valera, F., Ruiz-Berraquero, F. & Ramos-Cormenzana, A. (1982). Numerical taxonomy of moderately halophilic Gram-negative rods. J Gen Microbiol 128, 1959-1968.
30. Wainø, M., Tindall, B. J., Schumann, P. & Ingvorsen, K. (1999). Gracilibacillus gen. nov., with description of Gracilibacillus halotolerans gen. nov., sp. nov.; transfer of Bacillus dipsosauri to Gracilibacillus dipsosauri comb. nov., and Bacillus salexigens to the genus Salibacillus gen. nov., as Salibacillus salexigens comb. nov. Int J Syst Bacteriol 49, 821-831.
31. Yoon, J.-H., Weiss, N., Lee, K-C., Lee, I.-S., Kang, K. H. & Park Y.-H. (2001). Jeotgalibacillus alimentarius gen. nov., sp. nov., a novel bacterium isolated from jeotgal with L-lysine in the cell wall, and reclassification of Bacillus marinus Rüger 1983 as Marinibacillus marinus gen. nov., comb. nov. Int J Syst Evol Microbiol 51, 2087-2093.
32. Yoon, J.-H., Kang, K. H. & Park, Y.-H. (2003). Halobacillus salinus sp. nov., isolated from a salt lake on the coast of the East Sea in Korea. Int J Syst Evol Microbiol 53, 687-693.
33. Yoon, J.-H., Kang, K. H., Oh, T.-K. & Park Y.-H. (2004). Halobacillus locisalis sp. nov., a halophilic bacterium isolated from a marine solar saltern of the Yellow Sea in Korea. Extremophiles 8, 23-28.
34. Yoon, J.-H., Kang, K. H., Lee, C.-H., Oh, H.-W. & Oh, T.-K. (2005). Halobacillus yeomjeoni sp. nov., isolated from a marine solar saltern in Korea. Int J Syst Evol Microbiol 55, 2413-2417.