Comparative mapping reveals a complex relationship between the pearl millet genome and those of foxtail millet and rice

Theoretical and Applied Genetics

Volumn 100, Issue 2, 2000, Pages 190-198

  Devos, K M ^a   Pittaway, T S ^a   Reynolds, A ^a   Gale, M D ^a  

^a JOHN INNES CENTRE   (United Kingdom)

Author keywords

Colinearity; Comparative maps; Foxtail millet; Grasses; Oryza; Pearl millet; Pennisetum glaucum; Rice; Setaria

Indexed keywords

CHROMOSOMAL LOCALIZATION; FOXTAIL MILLET; GENE DUPLICATION; GENE REARRANGEMENT; LINKAGE GROUP; MILLET; PEARL MILLET; PLANT GENOME; RICE; SEQUENCE HOMOLOGY;

EID: 0033975814     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s001220050026     Document Type: Article

References (32)

1. Champoux MC, Wang GL, Sarkarung S, Mackill DJ, O'Toole JC, Huang N, McCouch SR (1995) Locating genes associated with root morphology and drought avoidance in rice via linkage to molecular markers. Theor Appl Genet 90:969-981
2. Chen M, SanMiguel P, Bennetzen JL (1998) Sequence organisation and conservation in sh2/al-homologous regions of sorghum and rice. Genetics 148:435-443
3. Devi KU, Rao MK, Croker SJ, Hedden P, Rao SA (1994) Coleoptile length, gibberellin sensitivity and concentrations in five non-allelic dwarf mutants of pearl millet - Pennisetum glaucum (L.) R. Br. Plant Growth Regul 15:215-221
4. Devos KM, Gale MD (1997) Comparative genetics in the grasses. Plant Mol Biol 35:3-15
5. Devos KM, Atkinson MD, Chinoy CN, Liu C, Gale MD (1992) RFLP based genetic map of the homoeologous group 3 chromosomes of wheat and rye. Theor Appl Genet 83:931-939
6. Devos KM, Dubcovsky J, Dvorák J, Chinoy CN, Gale MD (1995a) Structural evolution of wheat chromosomes 4A, 5A, and 7B and its impact on recombination. Theor Appl Genet 91:282-288
7. Devos KM, Pittaway TS, Busso CS, Gale MD, Witcombe JR, Hash CT (1995b) Molecular tools for the pearl millet nuclear genome. Int Sorghum Millets Newsl 36:64-65
8. Devos KM, Wang ZM, Beales J, Sasaki T, Gale MD (1998) Comparative genetic maps of foxtail millet (Setaria italica) and rice (Oryza sativa). Theor Appl Genet 96:63-68
9. Gale MD, Atkinson MD, Chinoy CN, Harcourt RL, Jia J, Li QY, Devos KM (1995) Genetic maps of hexaploid wheat. In: Li ZS, Xin ZY (eds) Proc 8th Int Wheat Genet Symp. China Agricultural Scientech Press, Beijing, pp 29-40
10. Gill KS, Gill BS, Endo TR, Boyko EV (1996) Identification and high density mapping of gene rich regions in chromosome group 5 of wheat. Genetics 143:1001-1012
11. 2 population. Genetics 148:479-494
12. Jones ES, Liu CJ, Gale MD, Hash CT, Witcombe JR (1995) Mapping quantitative trait loci for downy mildew resistance in pearl millet. Theor Appl Genet 91:448-456
13. Kurata N, Nagamura Y, Yamamoto K, Harushima Y, Sue N, Wu J, Antonio BA, Shomura A, Shimizu T, Lin S-Y, Inoue T, Fukuda A, Shimano T, Kuboki Y, Toyama T, Miyamoto Y, Kirihara T, Hayasaka K, Miyao A, Monna L, Zhong HS, Tamura Y, Wang Z-X, Momma T, Umehara Y, Yano M, Sasaki T, Minobe Y (1994) A 300 kilobase interval genetic map of rice including 883 expressed sequences. Nature Genet 8:365-372
14. Lagercrantz U (1998) Comparative mapping between Arabidopsis thaliana and Brassica nigra indicates that Brassica genomes have evolved through extensive genome replication accompanied by chromosome fusion and frequent rearrangements. Genetics 150:1217-1228
15. Lande R (1979) Effective deme size during long-term evolution estimated from rates of chromosomal rearrangements. Evolution 33:234-251
16. Laurie DA (1997) Comparative genetics of flowering time. Plant Mol Biol 35:167-177
17. Lebreton C, Lazic-Jancic V, Steed A, Pekic S, Quarrie SA (1995) Identification of QTL for drought responses in maize and their use in testing causal relationships between traits. J Exp Bot 46:853-865
18. Lilley JM, Ludlow MM, McCouch SR, O'Toole JC (1996) Locating QTL for osmotic adjustment and dehydration tolerance in rice. J Exp Bot 47:1427-1436
19. Liu CJ, Witcombe JR, Pittaway TS, Nash M, Busso CS, Hash CT, Gale MD (1994) An RFLP-based genetic map of pearl millet (Pennisetum glaucum). Theor Appl Genet 89:481-487
20. Liu CJ, Devos KM, Witcombe JR, Pittaway TS, Gale MD (1996) The effect of genome and sex on recombination rates in Pennisetum species. Theor Appl Genet 93:902-908
21. Moore G, Roberts M, Aragon-Alcaide L, Foote T (1997) Centromeric sites and cereal chromosome evolution. Chromosoma 105:321-323
22. Nagamura Y, Inoue T, Antonio BA, Shimano T, Kajiya H, Shomura A, Lin SY, Kuboki Y, Harushima Y, Kurata N, Minobe Y, Yano M, Sasaki T (1995) Conservation of duplicated segments between rice chromosomes 11 and 12. Breed Sci 45:373-376
23. Plaschke J, Börner A, Xie DX, Schlegel R, Koebner RMD, Gale MD (1993) RFLP mapping of genes affecting plant height and growth habit in rye. Theor Appl Genet 85:1049-1054
24. 3-insensitive dwarfing gene ctl on chromosome 7R in rye. Plant Breed 114:113-116
25. Poncet V, Lamy F, Devos KM, Gale MD, Sarr A, Robert T (1998) Genetic control of domestication traits in pearl millet (Pennisetum glaucum L., Poaceae). Theor Appl Genet (in press)
26. Ray JD, Yu L, McCouch SR, Champoux MC, Wang GL, Nguyen HAT (1996) Mapping quantitative trait loci associated with root penetration ability in rice. Theor Appl Genet 92:627-636
27. Ribaut J-M, Jiang C, Gonzales-de-Leon D, Edmeades GO, Hoisington DA (1997) Identification of quantitative trait loci under drought conditions in tropical maize. 2. Yield components and marker-assisted selection strategies. Theor Appl Genet 94:887-896
28. Teulat B, This D, Khairallah M, Borries C, Ragot C, Sourdille P, Leroy P, Monneveux P, Charrier A (1998) Several QTLs involved in osmotic-adjustment trait variation in barley (hordeum vulgare L.). Theor Appl Genet 96:688-698
29. Tuberosa R, Sanguineti MC, Landi P, Salvi S, Casarini E, Conti S (1998) RFLP mapping of quantitative trait loci controlling abscisic acid concentration in leaves of drought-stressed maize (Zea mays L.). Theor Appl Genet 97:744-755
30. Wang ZM, Devos KM, Liu CJ, Wang RQ, Gale MD (1998) Construction of RFLP-based maps of foxtail millet, Setaria italica (L.) P Beauv Theor Appl Genet 96:31-36
31. Yano M, Harushima Y, Nagamura Y, Kurata N, Minobe Y, Sasaki T (1997) Identification of quantitative trait loci controlling heading date in rice using a high-density linkage map. Theor Appl Genet 95:1025-1032
32. Zhang H, Jia J, Gale MD, Devos KM (1998) Relationship between the chromosomes of Aegilops umbellulata and wheat. Theor Appl Genet 96:69-75