Tropospheric H2 budget and the response of its soil uptake under the changing environment

Science of the Total Environment

Volumn 407, Issue 6, 2009, Pages 1809-1823

  Constant, Philippe ^a,b   Poissant, Laurier ^b   Villemur, Richard ^a  

^a INRS INSTITUT ARMAND FRAPPIER   (Canada)

^b ENVIRONMENT CANADA   (Canada)

Author keywords

Dry deposition; Global change; Hydrogen based economy; Microbial soil uptake; Molecular Hydrogen

Indexed keywords

DRY DEPOSITION; GLOBAL CHANGE; HYDROGEN-BASED ECONOMY; MICROBIAL SOIL UPTAKE; MOLECULAR HYDROGEN;

ATMOSPHERIC CHEMISTRY; GLOBAL WARMING; GREENHOUSE GASES; HYDROGEN; MICROBIOLOGY; MICROORGANISMS; NONMETALS; TROPOSPHERE;

SOILS;

BIOLOGICAL UPTAKE; DRY DEPOSITION; GLOBAL CHANGE; HYDROGEN; MICROBIAL ACTIVITY; SOURCE-SINK DYNAMICS; TROPOSPHERE;

ATMOSPHERE; BIOMASS; GREENHOUSE EFFECT; HYDROGEN; OCEANS AND SEAS; SOIL; SOIL MICROBIOLOGY;

EID: 60249084889     PISSN: 00489697     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scitotenv.2008.10.064     Document Type: Review

References (130)

1. Andreae M.O., and Merlet P. Emission of trace gases and aerosols from biomass burning. Glob Biogeochem Cycles 15 (2001) 955-966
2. Anisimov O.A. Potential feedback of thawing permafrost to the global climate system through methane emission. Environ Res Lett 2 (2007) 10.1088/1748-9326/2/4/045016
3. Aragno M. The aerobic, hydrogen-oxidizing (knallgas) bacteria. In: Burlage R.S. (Ed). Techniques in Microbial Ecology (1998), Oxford University Press, Oxford 79-112
4. Barnes D.H., Wofsy S.C., Fehlau B.P., Gottlieb E.W., Elkins J.W., Dutton G.S., et al. Hydrogen in the atmosphere: observations above a forest canopy in a polluted environment. J Geophys Res 108 (2003) 10.1029/2001JD001199
5. Biagini G.A., Finlay B.J., and Lloyd D. Evolution of the hydrogenosome. FEMS Microbiol Lett 155 (1997) 133-140
6. Böck A., King P.W., Blokesch M., and Posewitz M.C. Maturation of hydrogenases. Adv Microb Physiol 51 (2006) 1-71
7. Calvert J.G., Kerr J.A., Demerjian K.L., and McQuigg R.D. Photolysis of formaldehyde as a hydrogen atom source in the lower atmosphere. Science 175 (1972) 751-752
8. Colbeau A., and Vignais P.M. The membrane-bound hydrogenase of Rhodopseudomonas capsulata stability and catalytic properties. Biochim Biophys Acta 662 (1981) 271-284
9. 2O, and NO). Microbiol Rev 60 (1996) 609-640
10. Conrad R., and Seiler W. Field measurements of hydrogen evolution by nitrogen-fixing legumes. Soil Biol Biochem 11 (1979) 689-690
11. Conrad R., and Seiler W. Contribution of hydrogen production by biological nitrogen fixation to the global hydrogen budget. J Geophys Res 85 (1980) 5493-5498
12. Conrad R., and Seiler W. Decomposition of atmospheric hydrogen by soil microorganisms and soil enzymes. Soil Biol Biochem 13 (1981) 43-49
13. 2 and CO between soil and atmosphere: field studies in subtropical regions. J Geophys Res 90 (1985) 5699-5709
14. Conrad R., Aragno M., and Seiler W. Production and consumption of hydrogen in a eutrophic lake. Appl Environ Microbiol 45 (1983) 502-510
15. Conrad R., Aragno M., and Seiler W. The inability of hydrogen bacteria to utilize atmospheric hydrogen is due to threshold and affinity for hydrogen. FEMS Microbiol Lett 18 (1983) 207-210
16. Conrad R., Weber M., and Seiler W. Kinetics and electron transport of soil hydrogenases catalyzing the oxidation of atmospheric hydrogen. Soil Biol Biochem 15 (1983) 167-173
17. Constant P., Poissant L., and Villemur R. Annual hydrogen, carbon monoxide and carbon dioxide concentrations and surface to air exchanges in a rural area (Québec, Canada). Atmos Environ 42 (2008) 5090-5100
18. 2. ISME J 2 (2008) 1066-1076
19. Cord-Ruwisch R., Seitz H.-J., and Conrad R. The capacity of hydrogenotrophic anaerobic bacteria to compete for traces of hydrogen depends on the redox potential of the terminal electron acceptor. Arch Microbiol 149 (1988) 350-357
20. Crutzen P.J., and Andreae M. Biomass burning in the tropics: impact on the atmospheric chemistry and biogeochemical cycles. Science 250 (1990) 1669-1678
21. 3Cl and COS. Nature 282 (1979) 253-256
22. Derwent R.G., Collins W.J., Johnson C.E., and Stevenson D.S. Transient behaviour of tropospheric ozone precursors in a global 3-D CTM and their indirect greenhouse effects. Clim Change 49 (2001) 463-487
23. Dong Z., Wu L., Kettlewell B., Caldwell C.D., and Layzell D.B. Hydrogen fertilization of soils - is this a benefit of legume in rotation?. Plant Cell Environ 26 (2003) 1875-1879
24. 2 with OH. J Geophys Res 94 (1989) 9831-9836
25. Evans D.J., and Pickett C.J. Chemistry and the hydrogenases. Chem Soc Rev 32 (2003) 268-275
26. Fontecilla-Camps J.C., and Ragsdale S.W. Nickel-iron-sulfur active sites: hydrogenase and CO dehydrogenase. Adv Inorg Chem 47 (1999) 283-333
27. Friedrich B., and Schwartz E. Molecular biology of hydrogen utilization in aerobic chemiolithotrophs. Annu Rev Microbiol 47 (1993) 351-383
28. Fuentes J.D., Lerdau M., Atkinson R., Baldocchi D., Bottenheim J.W., Ciccioli P., et al. Biogenic hydrocarbons in the atmospheric boundary layer: a review. Bull Am Meteorol Soc 81 (2000) 1537-1575
29. Gerst S., and Quay P. The deuterium content of atmospheric molecular hydrogen: method and initial measurements. J Geophys Res 105 (2000) 26433-26445
30. Gerst S., and Quay P. Deuterium component of the global molecular hydrogen cycle. J Geophys Res 106 (2001) 5021-5031
31. Gödde M., Meuser K., and Conrad R. Hydrogen consumption and carbon monoxide production in soils with different properties. Biol Fertil Soils 32 (2000) 129-134
32. Guenther A., Hewitt C.N., Erickson D., Fall R., Geron C., Graedel T., et al. A global model of natural volatile organic compounds emissions. J Geophys Res 100 (1995) 8873-8892
33. Guo R., and Conrad R. Extraction and characterization of soil hydrogenases oxidizing atmospheric hydrogen. Soil Biol Biochem 40 (2008) 1149-1154
34. Haan D., Zuo Y., Gros V., and Brenninkmeijer C.A.M. Photochemical production of carbon monoxide in snow. J Atmos Chem 40 (2001) 217-230
35. 2 oxidation in respiring and denitrifying Paracoccus denitrificans. FEMS Microbiol Lett 78 (1991) 259-264
36. 2 consumption and a tritium exchange assay. Biol Fertil Soils 17 (1994) 125-128
37. Hauglustaine D.A., and Ehhalt D.H. A three-dimensional model of molecular hydrogen in the troposphere. J Geophys Res 107 (2002) 10.1029/2001JD001156
38. Heimann A.C., Batstone D.J., and Jakobsen R. Methanosarcina spp. drive vinyl chloride dechlorination via interspecies hydrogen transfer. Appl Environ Microbiol 72 (2006) 2942-2949
39. Heimann A.C., Blodau C., Postma D., Larsen F., Viet P.H., Nhan P.Q., et al. Hydrogen thresholds and steady-state concentrations associated with microbial arsenate respiration. Environ Sci Technol 41 (2007) 2311-2317
40. Herr F.L. Dissolved hydrogen in Eurasian Arctic waters. Tellus 36B (1984) 55-66
41. Herr F.L., Frank E.C., Leone G.M., and Kennicutt M.C. Diurnal variability of dissolved molecular hydrogen in the tropical South Atlantic Ocean. Deep-Sea Res 31 (1984) 13-20
42. Hoehler T.M., Alperin M.J., Albert D.B., and Martens C.S. Thermodynamic control on hydrogen concentrations in anoxic sediments. Geochim Cosmochim Acta 62 (1998) 1745-1756
43. 2 elicits long-term decline in nitrogen fixation. Science 304 (2004) 1291
44. Hurst D.F., Dutton G.S., Romashkin P.A., Wamsley P.R., Moore F.L., Elkins J.W., et al. Closure of the total hydrogen budget of the northern extratropical lower stratosphere. J Geophys Res 104 (1999) 8191-8200
45. Ichimasa M., Ichimasa Y., Azuma Y., Komuro M., Fujita K., and Akita Y. Oxidation of molecular tritium by surface soils. J Radiat Res 29 (1988) 144-151
46. Ichimasa M., Ichimasa Y., and Akita Y. In vivo fixation of atmospheric tritium gas in pine and Zelkova trees and their surroundings. J Radiat Res 30 (1989) 330-337
47. Ichimasa M., Ichimasa Y., Yagi Y., Ko R., Suzuki M., and Akita Y. Oxidation of atmospheric molecular tritium in plant leaves, lichens and mosses. J Radiat Res 30 (1989) 323-329
48. Ichimasa M., Suzuki M., Obayashi H., Sakuma Y., and Ichimasa Y. In vitro determination of oxidation of atmospheric tritium gas in vegetation and soil in Ibaraki and Gifu, Japan. J Radiat Res 40 (1999) 243-251
49. Joel G., Chapin III F.S., Chiariello N.R., Thayer S.S., and Field C.B. Species-specific responses of plant communities to altered carbon and nutrient availability. Glob Change Biol 7 (2001) 435-450
50. Kassenga G., Pardue J.H., Moe W.M., and Bowman K.S. Hydrogen thresholds as indicators of dehalorespiration in constructed treatment wetlands. Environ Sci Technol 38 (2004) 1024-1030
51. Khalil M.A.K., and Rasmussen R.A. Global increase of atmospheric molecular hydrogen. Nature 347 (1990) 743-745
52. King G.M. Contributions of atmospheric CO and hydrogen uptake to microbial dynamics on recent Hawaiian volcanic deposits. Appl Environ Microbiol 69 (2003) 4067-4075
53. King G.M. Uptake of carbon monoxide and hydrogen at environmentally relevant concentrations by mycobacteria. Appl Environ Microbiol 69 (2003) 7266-7272
54. King G.M., and Weber C.K. Interactions between bacterial carbon monoxide and hydrogen consumption and plant development on recent volcanic deposits. ISME J 2 (2008) 195-203
55. 2. FEMS Microbiol Lett 111 (1993) 337-341
56. s values for hydrogen of methanogenic bacteria and sulfate-reducing bacteria: an explanation for the apparent inhibition of methanogenesis by sulfate. Arch Microbiol 131 (1982) 278-282
57. 2-utilizing bacteria, Desulfomicrobium hypogeium sp. nov. and Acetobacterium psammolithicum sp. nov., and their ecological roles. Appl Environ Microbiol 65 (1999) 2300-2306
58. - nodules. Appl Environ Microbiol 46 (1983) 304-311
59. Lallo M., Aalto T., Laurila T., and Hatakka J. Seasonal variations in hydrogen deposition to boreal forest soil in southern Finland. Geophys Res Lett 35 (2008) 10.1029/2007GL032357
60. 4, and CO between 1992 and 1999 linked to biomass burning. Glob Biogeochem Cycles 16 (2002) 10.1029/2001GB001466
61. Leach M.R., and Zamble D.B. Metallocenter assembly of the hydrogenase enzymes. Curr Opin Chem Biol 11 (2007) 159-165
62. Le Texier H., Solomon S., and Garcia R.R. The role of molecular hydrogen and methane oxidation in the water vapour budget of the stratosphere. Q J R Meteorol Soc 114 (1988) 281-295
63. Löffler F.E., Tiedje J.M., and Sanford R.A. Fraction of electrons consumed in electron acceptor reduction and hydrogen thresholds as indicators of halorespiratory physiology. Appl Environ Microbiol 65 (1999) 4049-4056
64. Lovley D.R. Minimum threshold for hydrogen metabolism in methanogenic bacteria. Appl Environ Microbiol 49 (1985) 1530-1531
65. Lovley D.R., and Goodwin S. Hydrogen concentrations as an indicator of the predominant terminal electron-accepting reactions in aquatic sediments. Geochim Cosmochim Acta 52 (1988) 2993-3003
66. Lovley D.R., Phillips E.J.P., and Lonergan D.J. Hydrogen and formate oxidation coupled to dissimilatory reduction of iron or manganese by Alteromonas putrefaciens. Appl Environ Microbiol 55 (1989) 700-706
67. 2 concentrations to determine distribution of microbially catalyzed redox reactions in anoxic groundwater. Environ Sci Technol 28 (1994) 1205-1210
68. Luijten M.L.G.C., Roelofsen W., Langenhoff A.A.M., Schraa G., and Stams A.J.M. Hydrogen threshold concentrations in pure cultures of halorespiring bacteria and at a site polluted with chlorinated ethenes. Environ Microbiol 6 (2004) 646-650
69. Maimaiti J., Zhang Y., Yang J., Cen Y.-P., Layzell D.B., Peoples M., et al. Isolation and characterization of hydrogen-oxidizing bacteria induced following exposure of soil to hydrogen gas and their impact on plant growth. Environ Microbiol 9 (2007) 435-444
70. 2. J Geophys Res 112 (2007) 10.1029/2006JD007403
71. Marsh T.L., and McInerney M.J. Relationship of hydrogen bioavailability to chromate reduction in aquifer sediments. Appl Environ Microbiol 67 (2001) 1517-1521
72. McFarlane J.C. Tritium accumulation in lettuce fumigated with elemental tritium. Environ Exp Bot 18 (1978) 131-137
73. McFarlane J.C., Rogers R.D., and Bradley Jr. D.V. Environmental tritium oxidation in surface soil. Environ Sci Technol 12 (1978) 590-593
74. Millbank J.W. Nitrogenase and hydrogenase in cyanophilic lichens. New Phytol 92 (1982) 221-228
75. Novelli P.C., Lang P.M., Masarie K.A., Hurst D.F., Myers R., and Elkins J.W. Molecular hydrogen in the troposphere: global distribution and budget. J Geophys Res 104 (1999) 30427-30444
76. Ogo S., Kure B., Nakai H., Watanabe Y., and Fukuzumi S. Why do nitrogenases waste electrons by evolving dihydrogen?. Appl Organomet Chem 18 (2004) 589-594
77. Olah G.A., Goeppert A., and Prakash G.K.S. Beyond oil and gas: the methanol economy (2006), Wilew-VCH, Verlag GmbH & Co. KGaA, Weinheim 290 pp.
78. Paerl H.W. Microbially mediated nitrogen cycling. In: Burlage R.S. (Ed). Techniques in Microbial Ecology (1998), Oxford University Press, Oxford 3-30
79. Paneth F.A. The chemical composition of the atmosphere. Q J R Meteorol Soc 63 (1937) 433-443
80. 2 changes on the greening of the Northern Hemisphere over the past two decades. Geophys Res Lett 33 (2006) 10.1029/2006GL028205
81. Poissant L., Constant P., Pilote M., Canário J., O'Driscoll N., Ridal J., et al. The ebullition of hydrogen, carbon monoxide, methane, carbon dioxide and gaseous mercury from the Cornwall Area of Concern. Sci Total Environ 381 (2007) 256-262
82. Price H., Jaeglé L., Rice A., Quay P., Novelli P.C., and Gammon R. Global budget of molecular hydrogen and its deuterium content: constraints from ground station, cruise, and aircraft observations. J Geophys Res 112 (2007) 10.1029/2006JD008152
83. 2) in mid-latitude coastal waters. Mar Chem 105 (2007) 129-139
84. 2. Geophys Res Lett 29 (2002) 10.1029/2002GL015118
85. 2 samples. Geochim Cosmochim Acta 66 (2002) 2475-2481
86. 2. Nature 424 (2003) 918-921
87. Ramachandran R., and Menon R.K. An overview of industrial uses of hydrogen. Int J Hydrogen Energy 23 (1998) 593-598
88. 4. Annu Rev Phys Chem 39 (1988) 367-394
89. Reimann S., and Lewis A.C. Anthropogenic VOCs. In: Koppmann R. (Ed). Volatile Organic Compounds in the Atmosphere (2007), Blackwell Publishing Ltd., Oxford 33-81
90. 4 oxidation in the stratosphere and the troposphere. J Geophys Res 111 (2006) 10.1029/2005JD006760
91. Rhee T.S., Brenninkmeijer C.A.M., and Röckmann T. The overwhelming role of soils in the global atmospheric hydrogen cycle. Atmos Chem Phys 6 (2006) 1611-1625
92. 2 under resting and growing conditions. Arch Microbiol 137 (1984) 26-32
93. Röckmann T., Rhee T.S., and Engel A. Heavy hydrogen in the stratosphere. Atmos Chem Phys 3 (2003) 2015-2023
94. Sanderson M.G., Collins W.J., Derwent R.G., and Johnson C.E. Simulation of global hydrogen levels using a Lagrangian three-dimensional model. J Atmos Chem 46 (2003) 15-28
95. Schmidt U. Molecular hydrogen in the atmosphere. Tellus 26 (1974) 78-90
96. Schmidt U., and Conrad R. Hydrogen, carbon monoxide, and methane dynamics in Lake Constance. Limnol Oceanogr 38 (1993) 1214-1226
97. Schnackenberg J., Schulz R., and Senger H. Characterization and purification of a hydrogenase from the eukaryotic green alga Scenedesmus obliquus. FEBS Lett 327 (1993) 21-24
98. Schropp S.J., Scranton M.I., and Schwarz J.R. Dissolved hydrogen, facultatively anaerobic, hydrogen-producing bacteria, and potential hydrogen production rates in the western North Atlantic Ocean and Gulf of Mexico. Limnol Oceanogr 32 (1987) 396-402
99. Schubert K.R., and Evans H.J. Hydrogen evolution: a major factor affecting the efficiency of nitrogen fixation in nodulated symbionts. Proc Natl Acad Sci U S A 73 (1976) 1207-1211
100. Schuler S., and Conrad R. Soils contain two different activities for oxidation of hydrogen. FEMS Microbiol Lett 73 (1990) 77-83
101. Schuler S., and Conrad R. Hydrogen oxidation activities in soil as influenced by pH, temperature, moisture, and season. Biol Fertil Soils 12 (1991) 127-130
102. Schultz M.G., Diehl T., Brasseur G.P., and Zittel W. Air pollution and climate-forcing impacts of a global hydrogen economy. Science 302 (2003) 624-627
103. Schütz H., Conrad R., Goodwin S., and Seiler W. Emission of hydrogen from deep and shallow freshwater environments. Biogeochemistry 5 (1988) 295-311
104. Scranton M.I. Hydrogen cycling in the waters near Bermuda: the role of the nitrogen fixer, Oscillatoria thiebautii. Deep-Sea Res 31 (1984) 133-143
105. Scranton M.I., Barger W.R., and Herr F.L. Molecular hydrogen in the urban troposphere: measurement of seasonal variability. J Geophys Res 85 (1980) 5575-5580
106. Scranton M.I., Jones M.M., and Herr F.L. Distribution and variability of dissolved hydrogen in the Mediterranean Sea. J Mar Res 40 (1982) 873-891
107. Scranton M.I., Novelli P.C., and Loud P.A. The distribution and cycling of hydrogen gas in the waters of two anoxic marine environments. Limnol Oceanogr 29 (1984) 993-1003
108. Seinfeld J.H., and Pandis S.N. Atmospheric Chemistry, From air pollution to climate change (1998), John Wiley and Sons, Inc., New York 1326 pp.
109. 2 activation. Chem Rec 7 (2007) 37-46
110. Simmonds P.G., Derwent R.G., O'Doherty S., Ryall D.B., Steele L.P., Langenfelds R.L., et al. Continuous high-frequency observations of hydrogen at the Mace Head baseline atmospheric monitoring station over the 1994-1998 period. J Geophys Res 105 (2000) 12105-12121
111. Smatlak C.R., Gossett J.M., and Zinder S.H. Comparative kinetics of hydrogen utilization for reductive dechlorination of tetrachloroethene and methanogenesis in an anaerobic enrichment culture. Environ Sci Technol 30 (1996) 2850-2858
112. 2 uptake measured in the laboratory. Geophys Res Lett 33 (2006) 10.1029/2006GL026749
113. Smith-Downey N.V., Randerson J.T., and Eiler J.M. Molecular hydrogen uptake by soils in forest, desert, and marsh ecosystems in California. J Geophys Res 113 (2008) 10.1029/2008JG000701
114. 2 fixation. Soil Biol Biochem 37 (2005) 1938-1945
115. 2) at a suburban site in Switzerland. Atmos Environ 41 (2007) 2111-2124
116. Stephenson M., and Stickland L.H. Hydrogenase: a bacterial enzyme activating molecular hydrogen I. The properties of the enzyme. Biochem J 25 (1931) 205-214
117. Talukdar R.K., Gierczak T., Goldfarb L., Rudich Y., Madhava Rao B.S., and Ravishankara A.R. Kinetics of hydroxyl radical reactions with isotopically labeled hydrogen. J Phys Chem 100 (1996) 3037-3043
118. Tromp T.K., Shia R.-L., Allen M., Eiler J.M., and Yung Y.L. Potential environmental impact of a hydrogen economy on the stratosphere. Science 300 (2003) 1740-1742
119. Van Groenigen K.-J., Six J., Hungate B.A., de Graaff M.-A., van Breemen N., and van Kessel C. Element interactions limit carbon storage. Proc Natl Acad Sci U S A 103 (2006) 6571-6574
120. Vignais P.M., Billoud B., and Meyer J. Classification and phylogeny of hydrogenases. FEMS Microbiol Rev 25 (2001) 455-501
121. Vincent K.A., Cracknell J.A., Lenz O., Zebger I., Friedrich B., and Armstrong F.A. Electrocatalytic hydrogen oxidation by an enzyme at high carbon monoxide or oxygen levels. Proc Natl Acad Sci U S A 102 (2005) 16951-16954
122. Vincent K.A., Cracknell J.A., Parkin A., and Armstrong F.A. Hydrogen cycling by enzymes: electrocatalysis and implications for future energy technology. Dalton Trans 21 (2005) 3397-3403
123. 2) from a tunnel study. Atmos Environ 41 (2007) 8355-8369
124. Warwick N.J., Bekki S., Nisbet E.G., and Pyle J.A. Impact of a hydrogen economy on the stratosphere and troposphere studied in a 2-D model. Geophys Res Lett 31 (2004) 10.1029/2003GL019224
125. Xiao X., Prinn R.G., Simmonds P.G., Steele L.P., Novelli P.C., Huang J., et al. Optimal estimation of the soil uptake rate of molecular hydrogen from the Advanced Global Atmospheric Gases Experiment and other measurements. J Geophys Res 112 (2007) 10.1029/2006JD007241
126. 2 deposition velocities onto an andisol: uptake control by soil moisture. Tellus 51B (1999) 688-700
127. Yonemura S., Kawashima S., and Tsuruta H. Carbon monoxide, hydrogen, and methane uptake by soils in a temperate arable field and a forest. J Geophys Res 105 (2000) 14347-14362
128. 2 uptake. Tellus 52B (2000) 919-933
129. 10-Methylenetetrahydromethanopterin dehydrogenase from Methanobacterium thermoautotrophicum has hydrogenase activity. FEBS Lett 261 (1990) 112-116
130. 2 at midlatitudes. J Geophys Res 104 (1999) 1817-1825