메뉴 건너뛰기




Volumn 57, Issue 2, 2009, Pages 495-502

Development of a method for the genetic identification of commercial bivalve species based on mitochondrial 18S rRNA sequences

Author keywords

Bivalves; Clams; Cockles; Fins; Genetic identification; Jackknife clams; Mussels; Oysters; Scallops

Indexed keywords

BIVALVIA; OSTREIDAE; PECTINIDAE;

EID: 59849085776     PISSN: 00218561     EISSN: None     Source Type: Journal    
DOI: 10.1021/jf802787d     Document Type: Article
Times cited : (35)

References (27)
  • 1
    • 1642424261 scopus 로고    scopus 로고
    • Molecular phylogeny of the family Pectinidae (Mollusca: Bivalvia) based on mitochondrial 16S and 12S rRNA genes
    • Barucca. M.; Olmo, E.; Schiaparelli, S.; Canapa, A. Molecular phylogeny of the family Pectinidae (Mollusca: Bivalvia) based on mitochondrial 16S and 12S rRNA genes. Mol. Phylogenet. Evol. 2004, 31, 89-95.
    • (2004) Mol. Phylogenet. Evol , vol.31 , pp. 89-95
    • Barucca, M.1    Olmo, E.2    Schiaparelli, S.3    Canapa, A.4
  • 2
    • 0033935886 scopus 로고    scopus 로고
    • Molecular data from the 16S rRNA gene for the phylogeny of Pectinidae (Mollusca: Bivalvia)
    • Canapa, A.; Barucca, M.; Marinelli, A.; Olmo, E. Molecular data from the 16S rRNA gene for the phylogeny of Pectinidae (Mollusca: Bivalvia). J. Mol. Evol. 2000, 50, 93-97.
    • (2000) J. Mol. Evol , vol.50 , pp. 93-97
    • Canapa, A.1    Barucca, M.2    Marinelli, A.3    Olmo, E.4
  • 3
    • 0034776080 scopus 로고    scopus 로고
    • A molecular phylogeny of Heterodonta (Bivalvia) based on small ribosomal subunit RNA sequences
    • Canapa, A.; Barucca, M.; Marinelli, A.; Olmo, E. A molecular phylogeny of Heterodonta (Bivalvia) based on small ribosomal subunit RNA sequences. Mol. Phylogenet. Evol. 2001, 21, 156-161.
    • (2001) Mol. Phylogenet. Evol , vol.21 , pp. 156-161
    • Canapa, A.1    Barucca, M.2    Marinelli, A.3    Olmo, E.4
  • 4
    • 0037898435 scopus 로고    scopus 로고
    • Molecular data from the 16S rRNA gene for the phylogeny of Veneridae (Mollusca: Bivalvia)
    • Canapa, A.; Schiaparelli, S.; Marota, I.; Barucca, M. Molecular data from the 16S rRNA gene for the phylogeny of Veneridae (Mollusca: Bivalvia). Mar. Biol. 2003, 142 (6). 1125-1130.
    • (2003) Mar. Biol , vol.142 , Issue.6 , pp. 1125-1130
    • Canapa, A.1    Schiaparelli, S.2    Marota, I.3    Barucca, M.4
  • 5
    • 0033851407 scopus 로고    scopus 로고
    • Identification of the clam species Ruditapes decussatus (grooved carpet shell), Venerupis pullastra (pullet carpet shell), and Ruditapes philippinarum (Japanese carpet shell) by PCR-RFLP
    • Fernandez, A.; Garcia, T.; Asensio, L.; Rodriguez, M. A.; Gonzalez, I.; Cespedes, A.; Hernandez, P. E.; Martin, R. Identification of the clam species Ruditapes decussatus (grooved carpet shell), Venerupis pullastra (pullet carpet shell), and Ruditapes philippinarum (Japanese carpet shell) by PCR-RFLP. J. Agric. Food Chem. 2000, 48, 3336-3341.
    • (2000) J. Agric. Food Chem , vol.48 , pp. 3336-3341
    • Fernandez, A.1    Garcia, T.2    Asensio, L.3    Rodriguez, M.A.4    Gonzalez, I.5    Cespedes, A.6    Hernandez, P.E.7    Martin, R.8
  • 6
    • 0034884808 scopus 로고    scopus 로고
    • PCR-RFLP analysis of the internal transcribed spacer (ITS) region for identification of 3 clam species
    • Fernandez, A.; Garcia, T.; Asensio, L.; Rodriguez, M. A.; Gonzalez, I.; Hernandez, P. E.; Martin, R. PCR-RFLP analysis of the internal transcribed spacer (ITS) region for identification of 3 clam species. J. Food Sci. 2001, 66 (5), 657-661.
    • (2001) J. Food Sci , vol.66 , Issue.5 , pp. 657-661
    • Fernandez, A.1    Garcia, T.2    Asensio, L.3    Rodriguez, M.A.4    Gonzalez, I.5    Hernandez, P.E.6    Martin, R.7
  • 7
    • 0036271954 scopus 로고    scopus 로고
    • Genetic differentiation between the clam species Ruditapes decussatus (grooved carpet shell) and Venerupis pullastra (pullet carpet shell) by PCR-SSCP analysis
    • Fernandez, A.; Garcia, T.; Asensio, L.; Rodriguez, M. A.; Gonzalez, I.; Lobo, E.; Hernandez, P. E.; Martin, R. Genetic differentiation between the clam species Ruditapes decussatus (grooved carpet shell) and Venerupis pullastra (pullet carpet shell) by PCR-SSCP analysis. J. Sci. Food Agric. 2002, 82 (8), 881-885.
    • (2002) J. Sci. Food Agric , vol.82 , Issue.8 , pp. 881-885
    • Fernandez, A.1    Garcia, T.2    Asensio, L.3    Rodriguez, M.A.4    Gonzalez, I.5    Lobo, E.6    Hernandez, P.E.7    Martin, R.8
  • 8
    • 34848900748 scopus 로고    scopus 로고
    • Fernandez-Tajes, J.; Mendez, J. Identification of the razor clam species Ensis arcuatus, E. siliqua, E. directus, E. macha, and Solen marginatus using PCR-RFLP analysis of the 5S rDNA region. J. Agric. Food Chem. 2007, 55, 7278-7282.
    • Fernandez-Tajes, J.; Mendez, J. Identification of the razor clam species Ensis arcuatus, E. siliqua, E. directus, E. macha, and Solen marginatus using PCR-RFLP analysis of the 5S rDNA region. J. Agric. Food Chem. 2007, 55, 7278-7282.
  • 9
    • 26044434355 scopus 로고    scopus 로고
    • Nucleotide diversity and Pleistocene population expansion in Atlantic and Mediterranean scallops (Pecten maximus and P. jacobaeus) as revealed by the mitochondrial 16S ribosomal RNA gene
    • Saavedra, C.; Pena, J. B. Nucleotide diversity and Pleistocene population expansion in Atlantic and Mediterranean scallops (Pecten maximus and P. jacobaeus) as revealed by the mitochondrial 16S ribosomal RNA gene. J. Exp. Mar. Biol. Ecol. 2005, 323 (2), 138-150.
    • (2005) J. Exp. Mar. Biol. Ecol , vol.323 , Issue.2 , pp. 138-150
    • Saavedra, C.1    Pena, J.B.2
  • 10
    • 33749039523 scopus 로고    scopus 로고
    • Phylogenetics of American scallops (Bivalvia: Pectinidae) based on partial 16S and 12S ribosomal RNA gene sequences
    • Saavedra, C.; Pena, J. B. Phylogenetics of American scallops (Bivalvia: Pectinidae) based on partial 16S and 12S ribosomal RNA gene sequences. Mar. Biol. 2006, 150, 111-119.
    • (2006) Mar. Biol , vol.150 , pp. 111-119
    • Saavedra, C.1    Pena, J.B.2
  • 11
    • 33750972047 scopus 로고    scopus 로고
    • Development of a method for the genetic identification of mussel species belonging to Mytilus. Perna, Aulacomya, and other genera
    • Santaclara, F. J.; Espineira, M.; Cabado, A. G.; Aldasoro, A.; Gonzalez-Lavin. N.; Vieites. J. M. Development of a method for the genetic identification of mussel species belonging to Mytilus. Perna, Aulacomya, and other genera. J. Agric. Food Chem. 2006, 54, 8461-8470.
    • (2006) J. Agric. Food Chem , vol.54 , pp. 8461-8470
    • Santaclara, F.J.1    Espineira, M.2    Cabado, A.G.3    Aldasoro, A.4    Gonzalez-Lavin, N.5    Vieites, J.M.6
  • 13
    • 64549121666 scopus 로고    scopus 로고
    • Carpenter, V. H. N. The living marine resources of the Western Central Pacific. FAO Species Identification Guide for Fishery Purposes. 1: Seaweeds, Corals, Bivalves and Gastropods; FAO: Rome, Italy, 2003.
    • Carpenter, V. H. N. The living marine resources of the Western Central Pacific. FAO Species Identification Guide for Fishery Purposes. Vol. 1: Seaweeds, Corals, Bivalves and Gastropods; FAO: Rome, Italy, 2003.
  • 14
    • 0002788379 scopus 로고
    • Extraction of DNA from milligram amounts of fresh, herbarium and mummified plant tissues
    • Roger, S. O.; Bendich, A. J. Extraction of DNA from milligram amounts of fresh, herbarium and mummified plant tissues. Plant Mol. Biol. 1995, 5, 69-76.
    • (1995) Plant Mol. Biol , vol.5 , pp. 69-76
    • Roger, S.O.1    Bendich, A.J.2
  • 16
    • 64549102653 scopus 로고    scopus 로고
    • McCarthy, C. Chromas version 1.45; School of Health Science, Griffifth University, Gold Coast Campus, Queensland, Australia, 1996
    • McCarthy, C. Chromas version 1.45; School of Health Science, Griffifth University, Gold Coast Campus, Queensland, Australia, 1996.
  • 17
    • 64549089063 scopus 로고    scopus 로고
    • Hall, T. A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 1999, No. 41, 95-98.
    • Hall, T. A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 1999, No. 41, 95-98.
  • 19
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar, S.; Tamura, K.; Nei, M. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform. 2004, 5, 150-163.
    • (2004) Brief Bioinform , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 20
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial-dna in humans and chimpanzees
    • Tamura, K.; Nei, M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial-dna in humans and chimpanzees. Mol. Biol. Evol. 1993, 10 (3), 512-526.
    • (1993) Mol. Biol. Evol , vol.10 , Issue.3 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 21
    • 0023375195 scopus 로고
    • The neighbor-joining method-a new method for reconstructing phylogenetic trees
    • Saitou, N.; Nei, M. The neighbor-joining method-a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4, 406-425.
    • (1987) Mol. Biol. Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 23
    • 0001173316 scopus 로고
    • Comparison of taxa of the mussel Mytilus (Bivalvia) by analysis of the nuclear smallsubunit rRNA gene sequence
    • Kenchington, E.; Landry, D.; Bird, C. J. Comparison of taxa of the mussel Mytilus (Bivalvia) by analysis of the nuclear smallsubunit rRNA gene sequence. Can. J. Fish. Aquat. Sci. 1995, 52, 2613-2620.
    • (1995) Can. J. Fish. Aquat. Sci , vol.52 , pp. 2613-2620
    • Kenchington, E.1    Landry, D.2    Bird, C.J.3
  • 24
    • 18644371388 scopus 로고    scopus 로고
    • Single-step nested multiplex PCR to differentiate between various bivalve larvae
    • Larsen, J. B.; Frischer, M. E.; Rasmussen, L. J.; Hansen, B. W. Single-step nested multiplex PCR to differentiate between various bivalve larvae. Mar. Biol. 2005, 146 (6), 1119-1129.
    • (2005) Mar. Biol , vol.146 , Issue.6 , pp. 1119-1129
    • Larsen, J.B.1    Frischer, M.E.2    Rasmussen, L.J.3    Hansen, B.W.4
  • 25
    • 0000336811 scopus 로고    scopus 로고
    • Use of mtDNA direct polymerase chain reaction (PCR) sequencing and PCR-restriction fragment length polymorphism methodologies in species identification of canned tuna
    • Quinteiro, J.; Sotelo, C. G.; Rehbein, H.; Pryde, S. E.; Medina, I.; Perez-Martin, R. I.; Rey-Mendez. M.; Mackie. I. M. Use of mtDNA direct polymerase chain reaction (PCR) sequencing and PCR-restriction fragment length polymorphism methodologies in species identification of canned tuna. J. Agric. Food Chem. 1998, 46, 1662-1669.
    • (1998) J. Agric. Food Chem , vol.46 , pp. 1662-1669
    • Quinteiro, J.1    Sotelo, C.G.2    Rehbein, H.3    Pryde, S.E.4    Medina, I.5    Perez-Martin, R.I.6    Rey-Mendez, M.7    Mackie, I.M.8
  • 26
    • 0026588364 scopus 로고
    • FINS (forensically informative nucleotide sequencing) : A procedure for identifying the animal origin of biological specimens
    • Bartlett, S. E.; Davidson, W. S. FINS (forensically informative nucleotide sequencing) : a procedure for identifying the animal origin of biological specimens. Biotechnology 1992, 12 (3), 408-411.
    • (1992) Biotechnology , vol.12 , Issue.3 , pp. 408-411
    • Bartlett, S.E.1    Davidson, W.S.2
  • 27
    • 0030801002 scopus 로고    scopus 로고
    • Altschul, S. F.; Madden, T. L.; Schäffer, A. A.; Zhang, J.; Zhang, Z.: Miller, W.; Lipman, D. J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997, 25, 3389-3402.
    • Altschul, S. F.; Madden, T. L.; Schäffer, A. A.; Zhang, J.; Zhang, Z.: Miller, W.; Lipman, D. J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997, 25, 3389-3402.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.