Phylogenetics of American scallops (Bivalvia: Pectinidae) based on partial 16S and 12S ribosomal RNA gene sequences

Marine Biology

Volumn 150, Issue 1, 2006, Pages 111-119

  Saavedra, Carlos ^a   Peña, Juan B ^a  

^a CSIC Instituto de Acuicultura de Torre de la Sal IATS   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

BIVALVE; EVOLUTION; PHYLOGENETICS; RNA; TAXONOMY;

NORTH AMERICA; UNITED STATES;

AEQUIPECTEN; AMUSIUM; ARGOPECTEN; BIVALVIA; CRASSADOMA; EUVOLA; FLEXOPECTEN; NODIPECTEN; PECTEN; PECTINIDAE; ZYGOCHLAMYS PATAGONICA;

EID: 33749039523     PISSN: 00253162     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00227-006-0335-z     Document Type: Article

References (49)

1. Baco AR, Smith CR, Peek AS, Roderick GK, Vrijenhoek RC (1999) The phylogenetic relationships of whale-fall vesycomid clams based on mitochondrial COI DNA sequences. Mar Ecol Progr Ser 182:137-147
2. Barucca M, Olmo E, Schiaparelli S, Canapa A (2004) Molecular phylogeny of the family Pectinidae (Mollusca: Bivalvia) based on mitochondrial 16S and 12 S rRNA genes. Mol Phyl Evol 31:89-95
3. Bernard FR (1986) Crassadoma gen. nov. for "Hinnites" giganteus (Gray, 1825) from the North-eastern Pacific Ocean (Bivalvia: Pectinidae). Venus 45:70-74
4. Beu AG (1985) Pleistocene Chlamys patagonica delicatula (Bivalvia: Pectinidae) off southeastern Tasmania, and history of its species group in the Southern Ocean. Spec Publ S Aust Dept Mines Energy 5:1-11
5. Beu AG, Darragh TA (2001) Revision of southern Australian Cenozoic fossil Pectinidae (Mollusca:Bivalvia). Proc R Soc Victoria 113:1-205
6. Canapa A, Barucca M, Caputo V, Marinelli A, Nisi Cerioni T, Olmo E (2000a) A molecular analysis of the systematics of three Antarctic bivalves. Int J Zool Suppl 1:127-132
7. Canapa A, Barucca V, Marinelli A, Olmo E (2000b) Molecular data from the 16S rRNA gene for the phylogeny of Pectinidae (Mollusca: Bivalvia). J Mol Evol 50:93-97
8. Campbell DC (2000) Molecular evidence on the evolution of the Bivalvia. In: Harper EM, Taylor JD, Crame JA (eds) The evolutionary biology of the bivalvia. Geological Society of London Special Publication no. 177. The Geological Society, London, pp 31-46
9. Coan EV, Scott PV, Bernard FR (2000) Bivalve seashells of western North America. Santa Barbara Museum of Natural History, Santa Barbara
10. Distel DL (2000) Phylogenetic relationships among Mytilidae (Bivalvia): 18S rRNA data suggest convergence in mytilid body plans. Mol Phyl Evol 15:25-33
11. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
12. Forcelli DO (2000) Moluscos Magallánicos. Vazquez Mazzini, Buenos Aires
13. Frischer ME, Williams J, Kenchington E (1998) A molecular phylogeny of somemajor groups of Pectinidae inferred from 18S rRNA gene sequences. In: Jonston PA, Haggart JW (eds) Bivalves: and eon of evolution. University of Calgary Press, Calgary, pp 213-221
14. Giribet G, Carranza S (1999) What can 18S rDNA do for bivalve phylogeny? J Mol Evol 48:256-258
15. Grant US IV, Gale HR (1931) Catalogue of the marine Pliocene and Pleistocene Mollusca of California and adjacent regions. San Diego Soc Nat Hist Memoir 1:1-1036
16. Habe T (1977) Systematics of Mollusca in Japan: bivalvia and Scaphopoda. Hokuryukan, Tokyo (in japanese)
17. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-98
18. Harper EM (1991) The evolution of the cemented habit in the bivalved molluscs. Unpublished Ph.D. dissertation, Department of Earth Sciences, The Open Univesity, Milton Keynes, UK
19. Hertlein LG (1969) Family Pectinidae Rafinesque, 1815. In: Moore RC (ed) Tratise on invertebrate paleontology, Part N, Vol. 1, Mollusca 6, Bivalvia. Geological Society of America and Universtity of Kansas, Lawrence, Kansas. pp N348-N373
20. Keen AM (1971) Sea shells of tropical west America. Stanford University Press, Stanford
21. Kenchington E, Roddick DL (1994) Molecular evolution within the phylum Mollusca with emphasis on the class Bivalvia. In: Bourne NF, Bunting BL, Townsend LD (eds) Proceedings of the 9th international Pectinid workshop, Nanaimo (Canada), Vol I. Canadian Technical Report of Fisheries and Aquatic Sciences pp 206-213
22. Korobkov IA (1960) Family Pectinidae Lamarck, 1801. In: Orlov UA (eds) Osnovy Paleontologii, Mollusca-Loricata, Bivalvia and Scaphopoda. Acedmy Nauk USSR, Moscow, pp 82-85
23. Levinton JS (2001) Marine biology: function, biodiversity, ecology, 2nd edn. Oxford University Press, New York
24. Lodeiros C, Marín B, Prieto A (1999) Catálogo de los moluscos marinos de las costas nororientales de Venezuela: Clase Bivalvia. Edición APUDONS, Cumaná
25. Matsumoto M, Hayami I (2000) Phylogenetic analysis of the family Pectinidae (Bivalvia) based on mitochondrial cytochrome C oxidase subunit I. J Moll Stud 66:477-488
26. Mikkelsen PM (2004) Western Atlantic Bivalves, ver. 1. Available at http://www.peet.amnh.org/Western_Atlantic_bivalves.html
27. Ó Foighil D, Taylor DJ (2000) Evolution of parental care and ovulation behaviour in oysters. Mol Phyl Evol 15:301-313
28. Palumbi S (1996). Nucleic acids II: the polymerase chain reaction. In: Hillis DM, Moritz C, Mable BK (eds) Molecular systematics. 2nd edn. Sinauer, Sunderland, pp 205-247
29. Peña JB (2003) Taxonomía, Morfología, distribución y hábitat de los pectínidos iberoamericanos. In: Maeda-Martínez AN (ed) Los moluscos pectínidos de Latinoamérica: ciencia y acuicultura. Limusa, México
30. Posada D, Buckley TR (2004) Model selection and model averaging in phylogenetics: advantages of Akaike information criterion and bayesian approaches over likelihood ratio tests. Syst Biol 53:793-808
31. Posada D, Crandall KA (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818
32. Rice EL, Roddick D, Singh RK (1993) A comparison of molluscan Bivalvia phylogenies based on palaeontological and molecular data. Mol Mar Biol Biotechnol 2:137-146
33. Saavedra C, Peña JB (2004) Phylogenetic realtionships of commercial European and Australasian king scallops (Pecten sp.) based on partial 16S ribosomal RNA gene sequences. Aquaculture 235:153-156
34. Saavedra C, Peña JB (2005) Nucleotide diversity and Pleistocene population expansion in Atlantic and Mediterranean scallops (Pecten maximus and P. jacobaeus) as revealed by the mitochondrial 16S ribosomal RNA gene. J Exp Mar Biol Ecol 323:138-150
35. Shumway SE (ed) (1991) Scallops: biology, ecology and aquaculture. Elsevier, Amsterdam
36. Smith JT (1991) Cenozoic giant pectinids fom California and the Tertiary Caribbean province: Nodipecten, "Macrochlamys", Vertipecten, and Nodipecten species. U. S. Dept. of the Interior Gelogical Proffessional paper 139. Washington, Denver
37. Steiner G (1999) What can 18S rDNA do for bivalve phylogeny? Response. J Mol Evol 48:258-261
38. Steiner G, Müller M (1996) What can 18S rDNA do for bivalve phylogeny? J Mol Evol 43:58-70
39. Steiner G, Hammer S (2000) Molecular phylogeny of the Bivalvia inferred from 18S rDNA sequences with particular reference to the Pteriomorphia. In: Harper EM, Taylor JD, Crame JA (eds) The evolutionary biology of the bivalvia. Geological Society of London Special Publication no. 177. The Geological Society, London. pp 11-29
40. Swofford DL (1998) PAUP*. Phylogenetic analysis using parsimony (* and other methods) version 4. Sinauer, Sunderland
41. Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10:512-526
42. Thiele J (1935) Handbuch der systematichen Weichtierkunde. Gustav Fischer, Jena
43. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
44. Waller TR (1969) The evolution of the Argopecten gibbus stock (Mollusca: Bivalvia), with emphasis on the Tertiary and Quaternary species of eastern North America. Paleont Soc Memoir 3. J Paleont 43(suppl 5):1-125
45. Waller TR (1972) The functional significance of some shell microstructures of the Pectinacea (Mollusca: Bivalvia). In: International geological congress, Montreal, 24th Session, Section 7, Paleontology, pp 48-56
46. Waller TR (1986) A new genus and species of scallop (Bivalvia: Pectinidae) from off Somalia, and the definition of a new tribe Decatopectinini. Nautilus 100:34-46
47. Waller TR (1991) Evolutionary relationships among commercial scallops (Mollusca: Bivalvia: Pectinidae). In: Shumway SE (eds) Scallops: biology, ecology and aquaculture. Elsevier, Amsterdam, pp 1-73
48. Waller TR (1993) The evolution of "Chlamys" (Mollusca: Bivalvia: Pectinidae) in the tropical western Atlantic and eastern Pacific. Am Malacol Bull 10:195-249
49. Waller TR (2006) New phylogenies of the Pectinidae (Mollusca: Bivalvia): reconciling morphological and molecular approaches. In: Shumway SE, Parsons J (eds) Scallops: biology, ecology and aquaculture II. Elsevier, Amsterdam, pp 1-44