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Volumn , Issue SUPPL. 85, 2009, Pages

Overview of mRNA expression profiling using DNA microarrays

Author keywords

False discovery rate; Oligonucleotide arrays; Significance tests; Statistical analysis; Transcriptome profiling

Indexed keywords

DNA; FLUORESCENT DYE; MESSENGER RNA; OLIGONUCLEOTIDE; COMPLEMENTARY DNA;

EID: 59649119053     PISSN: 19343639     EISSN: 19343647     Source Type: Journal    
DOI: 10.1002/0471142727.mb2204s85     Document Type: Review
Times cited : (12)

References (27)
  • 1
    • 0035293021 scopus 로고    scopus 로고
    • Quantitative analysis of mRNA amplification by in vitro transcription
    • Baugh, L.R., Hill, A.A., Brown, E.L., and Hunter, C.P. 2001. Quantitative analysis of mRNA amplification by in vitro transcription. Nucl. Acids Res. 29:E29.
    • (2001) Nucl. Acids Res. , vol.29
    • Baugh, L.R.1    Hill, A.A.2    Brown, E.L.3    Hunter, C.P.4
  • 2
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: Apractical and powerful approach to multiple testing
    • Benjamini, Y. and Hochberg, Y. 1995. Controlling the false discovery rate: Apractical and powerful approach to multiple testing. J. R. Stat. Soc. B 57:289-300.
    • (1995) J. R. Stat. Soc. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 3
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • Bolstad, B.M., Irizarry, R.A., Astrand, M., and Speed, T.P. 2003. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19:185-193.
    • (2003) Bioinformatics , vol.19 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 4
    • 0037276175 scopus 로고    scopus 로고
    • Statistical tests for differential expression in cDNA microarray experiments
    • Cui, X. and Churchill, G.A. 2003. Statistical tests for differential expression in cDNA microarray experiments. Genome Biol. 4:210.
    • (2003) Genome Biol. , vol.4 , pp. 210
    • Cui, X.1    Churchill, G.A.2
  • 5
    • 24144445705 scopus 로고    scopus 로고
    • Improved statistical tests for differential gene expression by shrinking variance components estimates
    • Cui, X., Hwang, J.T., Qiu, J., Blades, N.J., and Churchill, G.A. 2005. Improved statistical tests for differential gene expression by shrinking variance components estimates. Biostatistics 6:59-75.
    • (2005) Biostatistics , vol.6 , pp. 59-75
    • Cui, X.1    Hwang, J.T.2    Qiu, J.3    Blades, N.J.4    Churchill, G.A.5
  • 7
    • 40849097774 scopus 로고    scopus 로고
    • Comparing whole genomes using DNA microarrays
    • Gresham, D., Dunham, M.J., and Botstein, D. 2008. Comparing whole genomes using DNA microarrays. Nat. Rev. Genet. 9:291-302.
    • (2008) Nat. Rev. Genet. , vol.9 , pp. 291-302
    • Gresham, D.1    Dunham, M.J.2    Botstein, D.3
  • 10
    • 0036713497 scopus 로고    scopus 로고
    • Representation is faithfully preserved in global cDNA amplified exponentially from sub-picogram quantities of mRNA
    • Iscove, N.N., Barbara, M., Gu, M., Gibson, M., Modi, C., and Winegarden, N. 2002. Representation is faithfully preserved in global cDNA amplified exponentially from sub-picogram quantities of mRNA. Nat. Biotechnol. 20:940-943.
    • (2002) Nat. Biotechnol. , vol.20 , pp. 940-943
    • Iscove, N.N.1    Barbara, M.2    Gu, M.3    Gibson, M.4    Modi, C.5    Winegarden, N.6
  • 11
    • 0035733752 scopus 로고    scopus 로고
    • The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster
    • Jin, W., Riley, R.M., Wolfinger, R.D., White, K.P., Passador-Gurgel, G., and Gibson, G. 2001. The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster. Nat. Genet. 29:389-395.
    • (2001) Nat. Genet. , vol.29 , pp. 389-395
    • Jin, W.1    Riley, R.M.2    Wolfinger, R.D.3    White, K.P.4    Passador-Gurgel, G.5    Gibson, G.6
  • 14
    • 33747840464 scopus 로고    scopus 로고
    • Estimation and control of multiple testing error rates for microarray studies
    • Pounds, S.B. 2006. Estimation and control of multiple testing error rates for microarray studies. Brief. Bioinform. 7:25-36.
    • (2006) Brief. Bioinform. , vol.7 , pp. 25-36
    • Pounds, S.B.1
  • 16
    • 33846453992 scopus 로고    scopus 로고
    • A high-performance, small-scale microarray for expression profiling of many samples in Arabidopsis-pathogen studies
    • Sato, M., Mitra, R.M., Coller, J., Wang, D., Spivey, N.W., Dewdney, J., Denoux, C., Glazebrook, J., and Katagiri, F. 2007. A high-performance, small-scale microarray for expression profiling of many samples in Arabidopsis-pathogen studies. Plant J. 49:565-577.
    • (2007) Plant J. , vol.49 , pp. 565-577
    • Sato, M.1    Mitra, R.M.2    Coller, J.3    Wang, D.4    Spivey, N.W.5    Dewdney, J.6    Denoux, C.7    Glazebrook, J.8    Katagiri, F.9
  • 17
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical bayes methods for assessing differential expression in microarray experiments
    • Article 3
    • Smyth, G.K. 2004. Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol. 3:ARticle 3.
    • (2004) Stat. Appl. Genet. Mol. Biol. , vol.3
    • Smyth, G.K.1
  • 18
    • 0242333835 scopus 로고    scopus 로고
    • Normalization of cDNA microarray data
    • Smyth, G.K. and Speed, T. 2003. Normalization of cDNA microarray data. Methods 31:265-273.
    • (2003) Methods , vol.31 , pp. 265-273
    • Smyth, G.K.1    Speed, T.2
  • 19
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • Storey, J.D. and Tibshirani, R. 2003. Statistical significance for genomewide studies. Proc. Natl. Acad. Sci. U.S.A. 100:9440-9445.
    • (2003) Proc. Natl. Acad. Sci. U.S.A. , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 20
    • 0141993704 scopus 로고    scopus 로고
    • A gene-coexpression network for global discovery of conserved genetic modules
    • Stuart, J.M., Segal, E., Koller, D., and Kim, S.K. 2003. A gene-coexpression network for global discovery of conserved genetic modules. Science 302:249-255.
    • (2003) Science , vol.302 , pp. 249-255
    • Stuart, J.M.1    Segal, E.2    Koller, D.3    Kim, S.K.4
  • 21
    • 38049091067 scopus 로고    scopus 로고
    • Gene expression profiling by massively parallel sequencing
    • Torres, T.T., Metta, M., Ottenwalder, B., and Schlotterer, C. 2008. Gene expression profiling by massively parallel sequencing. Genome Res. 18:172-177.
    • (2008) Genome Res. , vol.18 , pp. 172-177
    • Torres, T.T.1    Metta, M.2    Ottenwalder, B.3    Schlotterer, C.4
  • 22
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • Tusher, V.G., Tibshirani, R., and Chu, G. 2001. Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl. Acad. Sci. U.S.A. 98:5116-5121.
    • (2001) Proc. Natl. Acad. Sci. U.S.A. , vol.98 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 25
    • 2542610720 scopus 로고    scopus 로고
    • Preprocessing of oligonucleotide array data
    • Wu, Z. and Irizarry, R.A. 2004. Preprocessing of oligonucleotide array data. Nat. Biotechnol. 22:656-658.
    • (2004) Nat. Biotechnol. , vol.22 , pp. 656-658
    • Wu, Z.1    Irizarry, R.A.2
  • 27
    • 1342294092 scopus 로고    scopus 로고
    • Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
    • Yang, Y.H., Dudoit, S., Luu, P., Lin, D.M., Peng, V., Ngai, J., and Speed, T.P. 2002. Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation. Nucl. Acids Res. 30:e15.
    • (2002) Nucl. Acids Res. , vol.30
    • Yang, Y.H.1    Dudoit, S.2    Luu, P.3    Lin, D.M.4    Peng, V.5    Ngai, J.6    Speed, T.P.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.